Literature DB >> 22969496

(2,3,7,8,12,13,17,18-Octa-ethyl-porphyrinato-κ(4)N)cobalt(II)-2-nitro-benzaldehyde (1/2).

Anissa Mansour, Jean-Claude Daran, Habib Nasri.   

Abstract

The asymmetric unit of the title compound, [Co(C(36)H(44)N(4))]·2C(7)H(5)NO(3), is composed of one half of the complex, arranged about an inversion center, and a complete 2-nitro-benzaldehyde (NBA) mol-ecule. The structure consists of columns that contain inter-leaved mol-ecules of NBA and [Co(II)(OEP)] (OEP is 2,3,7,8,12,13,17,18-octa-ethyl-porphyrin), which are stacked along the a axis. The Co(II) atom is involved in a π inter-action with the ring of the NBA mol-ecule with a centroid-metal distance of 3.508 (6) Å. There is an intra-molecular C-H⋯O hydrogen bond in the NBA mol-ecule.

Entities:  

Year:  2012        PMID: 22969496      PMCID: PMC3435623          DOI: 10.1107/S1600536812036112

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Scheidt & Tyrk (1994 ▶). For related structures, see: Olmstead et al. (2003 ▶); Smirnov et al. (1998 ▶); Ben Moussa et al. (2011 ▶); Dhifet et al. (2010 ▶); Ellison et al. (2000 ▶).

Experimental

Crystal data

[Co(C36H44N4)]·2C7H5NO3 M = 893.92 Monoclinic, a = 10.1952 (11) Å b = 21.2230 (17) Å c = 10.1601 (10) Å β = 100.771 (9)° V = 2159.6 (4) Å3 Z = 2 Mo Kα radiation μ = 0.46 mm−1 T = 180 K 0.52 × 0.26 × 0.14 mm

Data collection

Agilent Xcalibur diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.797, T max = 0.939 11654 measured reflections 3782 independent reflections 2969 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.079 wR(F 2) = 0.197 S = 1.13 3782 reflections 272 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.99 e Å−3 Δρmin = −0.45 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036112/gw2124sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036112/gw2124Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C36H44N4)]·2C7H5NO3F(000) = 942
Mr = 893.92Dx = 1.375 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4505 reflections
a = 10.1952 (11) Åθ = 3.1–28.3°
b = 21.2230 (17) ŵ = 0.46 mm1
c = 10.1601 (10) ÅT = 180 K
β = 100.771 (9)°Prism, purple
V = 2159.6 (4) Å30.52 × 0.26 × 0.14 mm
Z = 2
Agilent Xcalibur Sapphire1 long-nozzle diffractometer3782 independent reflections
Radiation source: fine-focus sealed tube2969 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
Detector resolution: 8.2632 pixels mm-1θmax = 25.0°, θmin = 3.2°
ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −25→22
Tmin = 0.797, Tmax = 0.939l = −12→11
11654 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.079Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.197H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0484P)2 + 9.9571P] where P = (Fo2 + 2Fc2)/3
3782 reflections(Δ/σ)max < 0.001
272 parametersΔρmax = 0.99 e Å3
0 restraintsΔρmin = −0.45 e Å3
Experimental. Absorption correction: empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent Technologies,2012)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co0.50000.00001.00000.0223 (3)
N10.3667 (4)0.06811 (18)0.9652 (4)0.0219 (8)
N20.6428 (4)0.06272 (18)1.0557 (4)0.0241 (9)
C10.5113 (5)0.1592 (2)1.0282 (4)0.0284 (11)
H10.51420.20291.03620.034*
C20.8358 (5)−0.0066 (2)1.1098 (4)0.0278 (11)
H20.9279−0.00841.13840.033*
C110.2321 (5)0.0628 (2)0.9185 (4)0.0249 (10)
C120.1692 (5)0.1241 (2)0.9020 (5)0.0294 (11)
C130.2667 (5)0.1669 (2)0.9403 (5)0.0298 (11)
C140.3887 (5)0.1319 (2)0.9805 (4)0.0235 (10)
C210.6293 (5)0.1270 (2)1.0647 (4)0.0237 (10)
C220.7556 (5)0.1565 (2)1.1157 (5)0.0289 (11)
C230.8479 (5)0.1099 (2)1.1354 (5)0.0294 (11)
C240.7768 (4)0.0520 (2)1.0987 (4)0.0220 (10)
C1210.0251 (5)0.1352 (3)0.8455 (5)0.0366 (13)
H12A−0.00040.17640.87340.044*
H12B−0.02820.10390.88130.044*
C122−0.0048 (6)0.1315 (3)0.6913 (5)0.0425 (14)
H12C0.04670.16280.65540.064*
H12D−0.09810.13900.65910.064*
H12E0.01850.09050.66330.064*
C1310.2557 (5)0.2373 (2)0.9361 (5)0.0356 (12)
H13A0.31610.25491.01240.043*
H13B0.16550.24940.94320.043*
C1320.2888 (7)0.2648 (3)0.8080 (7)0.0515 (16)
H13C0.37670.25160.79870.077*
H13D0.28570.30990.81180.077*
H13E0.22500.25010.73250.077*
C2210.7747 (5)0.2255 (2)1.1470 (5)0.0346 (12)
H22A0.71750.24971.07800.041*
H22B0.86650.23691.14510.041*
C2220.7430 (6)0.2430 (3)1.2831 (6)0.0454 (15)
H22C0.65080.23411.28380.068*
H22D0.75970.28711.29940.068*
H22E0.79840.21891.35170.068*
C2310.9941 (5)0.1149 (3)1.1924 (5)0.0351 (12)
H23A1.02500.15671.17440.042*
H23B1.04220.08471.14780.042*
C2321.0261 (3)0.10290 (19)1.3431 (2)0.0475 (15)
H23C0.97770.13231.38780.071*
H23D1.12010.10821.37520.071*
H23E1.00050.06071.36120.071*
N30.4262 (3)0.10463 (13)0.6484 (2)0.0731 (19)
O10.7932 (3)0.01832 (13)0.7585 (2)0.0880 (18)
O310.3191 (3)0.12778 (13)0.6159 (2)0.109 (2)
O320.5322 (3)0.13821 (13)0.6534 (2)0.112 (2)
C1000.4442 (2)0.03814 (12)0.6568 (2)0.0412 (14)
C1010.5620 (3)0.00702 (11)0.7012 (2)0.0372 (12)
C1020.5715 (3)−0.05699 (11)0.7001 (2)0.0581 (19)
H1020.6525−0.07670.73260.070*
C1030.4612 (7)−0.0916 (3)0.6509 (6)0.0528 (16)
H1030.4679−0.13520.64660.063*
C1040.3390 (6)−0.0629 (3)0.6070 (5)0.0442 (15)
H1040.2643−0.08770.57660.053*
C1050.3263 (7)0.0006 (4)0.6076 (6)0.0558 (17)
H1050.24410.01970.57720.067*
C1060.6934 (6)0.0416 (4)0.7524 (6)0.0517 (17)
H1060.683 (7)0.097 (3)0.732 (6)0.062*
U11U22U33U12U13U23
Co0.0218 (5)0.0259 (5)0.0186 (4)−0.0027 (4)0.0019 (3)−0.0006 (4)
N10.020 (2)0.029 (2)0.0165 (18)−0.0002 (16)0.0020 (15)−0.0001 (15)
N20.031 (2)0.030 (2)0.0122 (18)−0.0023 (17)0.0055 (16)0.0010 (15)
C10.036 (3)0.026 (2)0.022 (2)−0.004 (2)0.002 (2)0.0014 (19)
C20.024 (2)0.040 (3)0.019 (2)−0.004 (2)0.0026 (18)0.000 (2)
C110.031 (3)0.030 (3)0.014 (2)0.002 (2)0.0063 (19)0.0008 (18)
C120.031 (3)0.036 (3)0.023 (2)0.008 (2)0.009 (2)0.002 (2)
C130.033 (3)0.037 (3)0.019 (2)0.005 (2)0.005 (2)0.000 (2)
C140.022 (3)0.030 (3)0.019 (2)0.0018 (19)0.0042 (18)−0.0004 (19)
C210.025 (3)0.029 (3)0.016 (2)−0.004 (2)0.0028 (19)−0.0007 (18)
C220.031 (3)0.035 (3)0.021 (2)−0.012 (2)0.005 (2)−0.001 (2)
C230.032 (3)0.039 (3)0.018 (2)−0.012 (2)0.007 (2)−0.002 (2)
C240.018 (2)0.032 (3)0.015 (2)−0.0056 (19)0.0013 (18)−0.0001 (18)
C1210.031 (3)0.044 (3)0.035 (3)0.012 (2)0.006 (2)−0.002 (2)
C1220.039 (3)0.053 (4)0.032 (3)0.007 (3)−0.003 (2)0.001 (3)
C1310.031 (3)0.036 (3)0.039 (3)0.010 (2)0.005 (2)−0.003 (2)
C1320.057 (4)0.038 (3)0.061 (4)0.005 (3)0.013 (3)0.011 (3)
C2210.033 (3)0.035 (3)0.035 (3)−0.017 (2)0.003 (2)−0.001 (2)
C2220.050 (4)0.042 (3)0.044 (3)−0.012 (3)0.007 (3)−0.012 (3)
C2310.026 (3)0.050 (3)0.028 (3)−0.017 (2)0.002 (2)−0.003 (2)
C2320.031 (3)0.078 (4)0.029 (3)−0.008 (3)−0.005 (2)−0.001 (3)
N30.088 (5)0.068 (4)0.067 (4)0.020 (4)0.023 (4)0.003 (3)
O10.058 (4)0.108 (5)0.094 (4)−0.016 (3)0.005 (3)−0.016 (4)
O310.099 (5)0.085 (4)0.138 (6)0.051 (4)0.005 (4)0.016 (4)
O320.109 (6)0.104 (5)0.126 (6)−0.037 (4)0.033 (5)−0.041 (4)
C1000.052 (4)0.050 (4)0.025 (3)0.008 (3)0.017 (3)0.008 (2)
C1010.047 (3)0.044 (3)0.025 (3)0.008 (3)0.017 (2)0.008 (2)
C1020.088 (6)0.049 (4)0.045 (4)−0.003 (4)0.033 (4)0.003 (3)
C1030.052 (4)0.069 (4)0.043 (3)−0.005 (3)0.023 (3)0.005 (3)
C1040.043 (4)0.062 (4)0.029 (3)−0.023 (3)0.010 (3)0.000 (3)
C1050.060 (4)0.080 (5)0.031 (3)0.001 (4)0.017 (3)0.005 (3)
C1060.028 (3)0.085 (5)0.041 (3)0.006 (3)0.005 (3)0.015 (3)
Co—N11.970 (4)C131—H13B0.9700
Co—N1i1.970 (4)C132—H13C0.9600
Co—N21.976 (4)C132—H13D0.9600
Co—N2i1.976 (4)C132—H13E0.9600
N1—C111.370 (6)C221—C2221.524 (8)
N1—C141.376 (6)C221—H22A0.9700
N2—C241.373 (6)C221—H22B0.9700
N2—C211.376 (6)C222—H22C0.9600
C1—C211.373 (7)C222—H22D0.9600
C1—C141.381 (7)C222—H22E0.9600
C1—H10.9300C231—C2321.526 (5)
C2—C241.376 (7)C231—H23A0.9700
C2—C11i1.383 (7)C231—H23B0.9700
C2—H20.9300C232—H23C0.9600
C11—C2i1.383 (7)C232—H23D0.9600
C11—C121.445 (7)C232—H23E0.9600
C12—C131.350 (7)N3—O311.1858
C12—C1211.492 (7)N3—O321.2882
C13—C141.441 (7)N3—C1001.4235
C13—C1311.499 (7)O1—C1061.123 (7)
C21—C221.438 (7)C100—C1011.3708
C22—C231.353 (7)C100—C1051.451 (7)
C22—C2211.503 (7)C101—C1021.3620
C23—C241.442 (7)C101—C1061.531 (7)
C23—C2311.499 (7)C102—C1031.357 (7)
C121—C1221.542 (7)C102—H1020.9300
C121—H12A0.9700C103—C1041.383 (9)
C121—H12B0.9700C103—H1030.9300
C122—H12C0.9600C104—C1051.354 (9)
C122—H12D0.9600C104—H1040.9300
C122—H12E0.9600C105—H1050.9300
C131—C1321.520 (8)C106—H1061.19 (7)
C131—H13A0.9700
N1—Co—N1i180.000 (1)C13—C131—H13B109.1
N1—Co—N290.21 (16)C132—C131—H13B109.1
N1i—Co—N289.79 (16)H13A—C131—H13B107.9
N1—Co—N2i89.79 (16)C131—C132—H13C109.5
N1i—Co—N2i90.21 (16)C131—C132—H13D109.5
N2—Co—N2i180.00 (16)H13C—C132—H13D109.5
C11—N1—C14104.5 (4)C131—C132—H13E109.5
C11—N1—Co127.9 (3)H13C—C132—H13E109.5
C14—N1—Co127.5 (3)H13D—C132—H13E109.5
C24—N2—C21104.4 (4)C22—C221—C222112.9 (4)
C24—N2—Co127.9 (3)C22—C221—H22A109.0
C21—N2—Co127.6 (3)C222—C221—H22A109.0
C21—C1—C14125.2 (5)C22—C221—H22B109.0
C21—C1—H1117.4C222—C221—H22B109.0
C14—C1—H1117.4H22A—C221—H22B107.8
C24—C2—C11i124.6 (4)C221—C222—H22C109.5
C24—C2—H2117.7C221—C222—H22D109.5
C11i—C2—H2117.7H22C—C222—H22D109.5
N1—C11—C2i124.9 (4)C221—C222—H22E109.5
N1—C11—C12111.2 (4)H22C—C222—H22E109.5
C2i—C11—C12123.9 (5)H22D—C222—H22E109.5
C13—C12—C11106.6 (5)C23—C231—C232112.7 (4)
C13—C12—C121128.6 (5)C23—C231—H23A109.0
C11—C12—C121124.8 (5)C232—C231—H23A109.0
C12—C13—C14106.5 (4)C23—C231—H23B109.0
C12—C13—C131128.1 (5)C232—C231—H23B109.0
C14—C13—C131125.3 (5)H23A—C231—H23B107.8
N1—C14—C1124.8 (4)C231—C232—H23C109.5
N1—C14—C13111.2 (4)C231—C232—H23D109.5
C1—C14—C13124.0 (4)H23C—C232—H23D109.5
C1—C21—N2124.6 (4)C231—C232—H23E109.5
C1—C21—C22124.1 (4)H23C—C232—H23E109.5
N2—C21—C22111.2 (4)H23D—C232—H23E109.5
C23—C22—C21106.6 (4)O31—N3—O32120.2
C23—C22—C221128.4 (5)O31—N3—C100122.0
C21—C22—C221124.9 (5)O32—N3—C100116.6
C22—C23—C24106.4 (4)C101—C100—N3126.4
C22—C23—C231128.3 (5)C101—C100—C105117.9 (3)
C24—C23—C231125.2 (5)N3—C100—C105115.7 (3)
N2—C24—C2124.8 (4)C102—C101—C100122.5
N2—C24—C23111.3 (4)C102—C101—C106115.0 (3)
C2—C24—C23123.9 (4)C100—C101—C106122.5 (3)
C12—C121—C122112.1 (4)C103—C102—C101119.2 (3)
C12—C121—H12A109.2C103—C102—H102120.4
C122—C121—H12A109.2C101—C102—H102120.4
C12—C121—H12B109.2C102—C103—C104121.0 (6)
C122—C121—H12B109.2C102—C103—H103119.5
H12A—C121—H12B107.9C104—C103—H103119.5
C121—C122—H12C109.5C105—C104—C103121.2 (6)
C121—C122—H12D109.5C105—C104—H104119.4
H12C—C122—H12D109.5C103—C104—H104119.4
C121—C122—H12E109.5C104—C105—C100118.3 (6)
H12C—C122—H12E109.5C104—C105—H105120.9
H12D—C122—H12E109.5C100—C105—H105120.9
C13—C131—C132112.3 (4)O1—C106—C101122.3 (7)
C13—C131—H13A109.1O1—C106—H106120 (3)
C132—C131—H13A109.1C101—C106—H106112 (3)
D—H···AD—HH···AD···AD—H···A
C106—H106···O321.19 (7)1.82 (7)2.701 (7)126 (5)
Cg···Co (Å)Co-Perp (Å)Beta (°)
Co···Cg1i3.508-3.21923.39
Co···Cg1ii3.508-3.21923.39
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C106—H106⋯O321.19 (7)1.82 (7)2.701 (7)126 (5)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structural and electronic characterization of nitrosyl(octaethylporphinato)iron(III) perchlorate derivatives.

Authors:  M K Ellison; C E Schulz; W R Scheidt
Journal:  Inorg Chem       Date:  2000-10-30       Impact factor: 5.165

3.  19F NMR and Structural Evidence for Spin-State Modulation of Six-Coordinate Cobalt(II) in a Weak Field Porphyrin Ligand(1).

Authors:  Valeriy V. Smirnov; Eric K. Woller; Stephen G. DiMagno
Journal:  Inorg Chem       Date:  1998-09-21       Impact factor: 5.165

4.  Substitutional disorder in bis-[(cyanato-κO)/hydroxido(0.5/0.5)](5,10,15,20-tetra-phenyl-porphyrinato-κN)tin(IV).

Authors:  Imen Ben Moussa; Mohamed Salah Belkhiria; Shabir Najmudin; Cecilia Bonifacio; Habib Nasri
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11
  4 in total

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