Literature DB >> 22969491

Poly[[μ-(3-amino-pyridine)-κ(2)N:N'-μ-chlorido-chlorido(N,N'-dimethyl-formamide-κO)nickel(II)] N,N'-dimethyl-formamide monosolvate].

Chun-Wei Yeh, Chi-Hsiung Jou, Chi-Hui Tsou, Maw-Cherng Suen.   

Abstract

The title compound, {[NiCl(2)(C(5)H(6)N(2))(C(3)H(7)NO)]·C(3)H(7)NO}(n), is a two-dimensional polymer in which the Ni(II) atom is coordinated by two N atoms from two 3-amino-pyridine ligands, one O atom from a dimethyl-formamide (DMF) group, one terminal Cl and two bridging Cl atoms in a distorted octa-hedral geometry. The Ni(II) atoms are bridged by the 3-amino-pyridine ligands [Ni⋯N = 6.7048 (3) Å] and Cl(-) atoms [Ni⋯N = 3.5698 (3) Å], forming (4,4) two-dimensional nets. The DMF solvent mol-ecule and the non-bridged Cl(-) ions participate in N-H⋯O and N-H⋯Cl hydrogen bonds with the amino groups.

Entities:  

Year:  2012        PMID: 22969491      PMCID: PMC3435618          DOI: 10.1107/S1600536812036215

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to coordination polymers, see: Kitagawa et al. (2004 ▶); Chiang et al. (2008 ▶); Yeh et al. (2008 ▶, 2009 ▶); Hsu et al. (2009 ▶). For related 3-amino­pyridine complexes, see: Zhu & Kitagawa (2002 ▶); Lah & Leban (2005 ▶, 2006 ▶); Kochel (2006 ▶); Wu et al. (2005 ▶); Qian & Huang (2006 ▶).

Experimental

Crystal data

[NiCl2(C5H6N2)(C3H7NO)]·C3H7NO M = 369.92 Monoclinic, a = 10.3684 (2) Å b = 15.0571 (3) Å c = 10.0976 (2) Å β = 103.832 (2)° V = 1530.70 (5) Å3 Z = 4 Mo Kα radiation μ = 1.62 mm−1 T = 293 K 0.38 × 0.30 × 0.18 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.628, T max = 1.000 6140 measured reflections 2748 independent reflections 2333 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.058 S = 1.04 2748 reflections 193 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.70 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036215/xu5609sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036215/xu5609Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[NiCl2(C5H6N2)(C3H7NO)]·C3H7NOF(000) = 768
Mr = 369.92Dx = 1.605 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4748 reflections
a = 10.3684 (2) Åθ = 3.2–29.0°
b = 15.0571 (3) ŵ = 1.62 mm1
c = 10.0976 (2) ÅT = 293 K
β = 103.832 (2)°Plate, green
V = 1530.70 (5) Å30.38 × 0.30 × 0.18 mm
Z = 4
Bruker SMART APEXII diffractometer2748 independent reflections
Radiation source: fine-focus sealed tube2333 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
phi and ω scansθmax = 25.2°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→12
Tmin = 0.628, Tmax = 1.000k = −16→18
6140 measured reflectionsl = −12→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.058H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0322P)2] where P = (Fo2 + 2Fc2)/3
2748 reflections(Δ/σ)max = 0.001
193 parametersΔρmax = 0.70 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni0.41415 (2)0.603502 (16)0.48905 (2)0.00775 (9)
C10.38923 (19)0.80038 (13)0.50209 (19)0.0102 (4)
H1A0.34890.78490.57180.012*
C20.4014 (2)0.88919 (13)0.4737 (2)0.0125 (4)
H2A0.37170.93250.52510.015*
C30.4579 (2)0.91299 (13)0.3683 (2)0.0120 (4)
H3A0.46550.97250.34660.014*
C40.50335 (19)0.84671 (13)0.29533 (19)0.0086 (4)
C50.49098 (19)0.75896 (13)0.33264 (19)0.0089 (4)
H5A0.52420.71460.28600.011*
C60.1441 (2)0.62218 (13)0.5369 (2)0.0127 (4)
H6A0.11900.58510.46140.015*
C7−0.0851 (2)0.61693 (15)0.5540 (3)0.0222 (5)
H7A−0.09540.58380.47090.033*
H7B−0.14510.66650.53900.033*
H7C−0.10450.57930.62350.033*
C80.0852 (2)0.70808 (15)0.7160 (2)0.0185 (5)
H8A0.15240.74930.70470.028*
H8B0.11790.67340.79680.028*
H8C0.00740.74010.72410.028*
C90.2418 (2)1.14619 (14)0.3491 (3)0.0210 (5)
H9A0.26651.11730.27750.025*
C100.1142 (2)1.01507 (16)0.3680 (3)0.0342 (6)
H10A0.15120.99480.29490.051*
H10B0.01961.02100.33580.051*
H10C0.13380.97300.44140.051*
C110.1376 (3)1.13771 (16)0.5363 (2)0.0274 (6)
H11A0.15391.09430.60800.041*
H11B0.04551.15410.51460.041*
H11C0.19131.18930.56570.041*
N10.43323 (16)0.73532 (11)0.43310 (16)0.0090 (4)
N20.55335 (18)0.86856 (12)0.18049 (17)0.0093 (4)
H2NA0.596 (2)0.9204 (15)0.190 (2)0.010 (6)*
H2NB0.600 (2)0.8292 (16)0.160 (2)0.019 (7)*
N30.05143 (17)0.64924 (11)0.59758 (17)0.0140 (4)
N40.17122 (19)1.10045 (12)0.41599 (19)0.0212 (4)
O10.26235 (14)0.64348 (8)0.57502 (14)0.0120 (3)
O20.27851 (16)1.22267 (10)0.37064 (17)0.0267 (4)
Cl10.60647 (5)0.54783 (3)0.42042 (5)0.00949 (12)
Cl20.26678 (5)0.56642 (3)0.27259 (5)0.01240 (12)
U11U22U33U12U13U23
Ni0.00809 (14)0.00705 (14)0.00920 (14)−0.00007 (11)0.00421 (10)−0.00004 (10)
C10.0088 (10)0.0124 (11)0.0097 (10)0.0003 (9)0.0028 (8)−0.0004 (8)
C20.0141 (11)0.0122 (11)0.0117 (10)0.0013 (9)0.0038 (9)−0.0035 (9)
C30.0148 (11)0.0082 (10)0.0124 (10)−0.0016 (9)0.0021 (9)0.0005 (8)
C40.0061 (10)0.0118 (10)0.0076 (9)−0.0013 (8)0.0008 (8)0.0007 (8)
C50.0065 (10)0.0109 (10)0.0091 (9)0.0014 (8)0.0015 (8)−0.0007 (8)
C60.0148 (11)0.0097 (10)0.0144 (10)−0.0005 (9)0.0052 (9)0.0022 (9)
C70.0140 (12)0.0201 (12)0.0347 (13)−0.0027 (10)0.0104 (10)−0.0025 (11)
C80.0163 (12)0.0195 (12)0.0228 (12)0.0017 (10)0.0110 (10)−0.0030 (10)
C90.0066 (10)0.0182 (13)0.0414 (14)−0.0015 (10)0.0121 (10)−0.0117 (11)
C100.0259 (14)0.0224 (14)0.0514 (17)−0.0045 (11)0.0036 (13)−0.0057 (13)
C110.0332 (14)0.0287 (14)0.0242 (13)0.0007 (12)0.0145 (11)0.0035 (11)
N10.0074 (8)0.0099 (8)0.0090 (8)0.0008 (7)0.0008 (7)0.0002 (7)
N20.0117 (9)0.0057 (9)0.0118 (9)0.0007 (8)0.0055 (7)−0.0001 (7)
N30.0098 (9)0.0136 (9)0.0208 (10)−0.0002 (8)0.0079 (8)−0.0010 (8)
N40.0225 (11)0.0159 (10)0.0262 (10)0.0018 (9)0.0075 (9)0.0009 (8)
O10.0110 (7)0.0116 (7)0.0148 (7)−0.0002 (6)0.0059 (6)0.0004 (6)
O20.0270 (10)0.0195 (9)0.0385 (10)−0.0038 (8)0.0174 (8)0.0034 (8)
Cl10.0099 (2)0.0079 (2)0.0125 (2)−0.0002 (2)0.00632 (19)0.00006 (19)
Cl20.0128 (3)0.0128 (3)0.0116 (2)−0.0007 (2)0.0029 (2)−0.0008 (2)
Ni—O12.0607 (13)C7—H7B0.9600
Ni—N12.0860 (16)C7—H7C0.9600
Ni—N2i2.1593 (17)C8—N31.462 (3)
Ni—Cl12.4124 (5)C8—H8A0.9600
Ni—Cl22.4139 (5)C8—H8B0.9600
Ni—Cl1ii2.4833 (5)C8—H8C0.9600
C1—N11.343 (2)C9—O21.216 (2)
C1—C21.380 (3)C9—N41.305 (3)
C1—H1A0.9300C9—H9A0.9300
C2—C31.380 (3)C10—N41.449 (3)
C2—H2A0.9300C10—H10A0.9600
C3—C41.388 (3)C10—H10B0.9600
C3—H3A0.9300C10—H10C0.9600
C4—C51.388 (3)C11—N41.454 (3)
C4—N21.417 (2)C11—H11A0.9600
C5—N11.343 (2)C11—H11B0.9600
C5—H5A0.9300C11—H11C0.9600
C6—O11.236 (2)N2—Niiii2.1593 (17)
C6—N31.322 (3)N2—H2NA0.89 (2)
C6—H6A0.9300N2—H2NB0.82 (2)
C7—N31.462 (3)Cl1—Niii2.4833 (5)
C7—H7A0.9600
O1—Ni—N188.14 (6)N3—C8—H8A109.5
O1—Ni—N2i88.87 (6)N3—C8—H8B109.5
N1—Ni—N2i88.32 (7)H8A—C8—H8B109.5
O1—Ni—Cl1171.70 (4)N3—C8—H8C109.5
N1—Ni—Cl196.57 (5)H8A—C8—H8C109.5
N2i—Ni—Cl184.46 (5)H8B—C8—H8C109.5
O1—Ni—Cl293.85 (4)O2—C9—N4126.7 (2)
N1—Ni—Cl293.17 (5)O2—C9—H9A116.7
N2i—Ni—Cl2176.93 (5)N4—C9—H9A116.7
Cl1—Ni—Cl292.710 (18)N4—C10—H10A109.5
O1—Ni—Cl1ii88.36 (4)N4—C10—H10B109.5
N1—Ni—Cl1ii174.19 (4)H10A—C10—H10B109.5
N2i—Ni—Cl1ii86.97 (5)N4—C10—H10C109.5
Cl1—Ni—Cl1ii86.372 (17)H10A—C10—H10C109.5
Cl2—Ni—Cl1ii91.690 (18)H10B—C10—H10C109.5
N1—C1—C2122.69 (18)N4—C11—H11A109.5
N1—C1—H1A118.7N4—C11—H11B109.5
C2—C1—H1A118.7H11A—C11—H11B109.5
C1—C2—C3119.24 (19)N4—C11—H11C109.5
C1—C2—H2A120.4H11A—C11—H11C109.5
C3—C2—H2A120.4H11B—C11—H11C109.5
C2—C3—C4118.92 (19)C5—N1—C1117.80 (17)
C2—C3—H3A120.5C5—N1—Ni123.02 (13)
C4—C3—H3A120.5C1—N1—Ni119.17 (13)
C3—C4—C5118.36 (18)C4—N2—Niiii118.73 (13)
C3—C4—N2120.29 (18)C4—N2—H2NA112.6 (13)
C5—C4—N2121.23 (18)Niiii—N2—H2NA97.6 (14)
N1—C5—C4122.94 (18)C4—N2—H2NB112.8 (16)
N1—C5—H5A118.5Niiii—N2—H2NB102.9 (16)
C4—C5—H5A118.5H2NA—N2—H2NB111 (2)
O1—C6—N3123.51 (19)C6—N3—C7121.13 (18)
O1—C6—H6A118.2C6—N3—C8120.52 (18)
N3—C6—H6A118.2C7—N3—C8118.24 (17)
N3—C7—H7A109.5C9—N4—C10122.0 (2)
N3—C7—H7B109.5C9—N4—C11120.33 (19)
H7A—C7—H7B109.5C10—N4—C11117.48 (19)
N3—C7—H7C109.5C6—O1—Ni126.39 (13)
H7A—C7—H7C109.5Ni—Cl1—Niii93.628 (17)
H7B—C7—H7C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2NA···Cl2iv0.89 (2)2.60 (2)3.4869 (16)176.4 (1)
N2—H2NB···O2v0.84 (2)2.11 (2)2.925 (2)173.3 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2NA⋯Cl2i 0.89 (2)2.60 (2)3.4869 (16)176.4 (1)
N2—H2NB⋯O2ii 0.84 (2)2.11 (2)2.925 (2)173.3 (1)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Functional porous coordination polymers.

Authors:  Susumu Kitagawa; Ryo Kitaura; Shin-ichiro Noro
Journal:  Angew Chem Int Ed Engl       Date:  2004-04-26       Impact factor: 15.336

2.  Bis(3-aminopyridine-kappaN)(4,4'-dimethyl-2,2'-bipyridine-kappa2N,N')(perchlorato-kappaO)copper(II) perchlorate.

Authors:  Hui Fen Qian; Wei Huang
Journal:  Acta Crystallogr C       Date:  2006-07-14       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  A dimeric cobalt(II)-suberate complex with 3-aminopyridine.

Authors:  Nina Lah; Ivan Leban
Journal:  Acta Crystallogr C       Date:  2006-10-31       Impact factor: 1.172

  4 in total

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