Literature DB >> 22969485

Di-μ-azido-κ(4)N(1):N(1')-bis-({1-[(E)-phen-yl(pyridin-2-yl-κN)methyl-idene]thio-semi-carbazidato-κ(2)N(1),S}copper(II)).

Roji J Kunnath, M R Prathapachandra Kurup, Seik Weng Ng.   

Abstract

In the title compound, [Cu(2)(C(13)H(11)N(4)S)(2)(N(3))(2)], the Cu(II) cation is N,N',S-chelated by the deprotonated Schiff base ligand and is coordinated by the azide anion, while an N atom from an adjacent azide anion bridges the Cu(II) cation at the apical position with a longer Cu-N distance of 2.533 (3) Å, completing the distorted N(4)S square-pyramidal coordination geometry. A pair of azide anions bridge the two Cu(II) cations, forming a centrosymmetric binuclear mol-ecule. In the crystal, the binuclear mol-ecules are linked by an N-H⋯N hydrogen bond into a ribbon running along the a axis.

Entities:  

Year:  2012        PMID: 22969485      PMCID: PMC3435612          DOI: 10.1107/S1600536812035751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the parent Schiff base, see: Casas et al. (2003 ▶).

Experimental

Crystal data

[Cu2(C13H11N4S)2(N3)2] M = 721.78 Monoclinic, a = 11.2462 (12) Å b = 7.2344 (10) Å c = 18.519 (2) Å β = 96.653 (5)° V = 1496.5 (3) Å3 Z = 2 Mo Kα radiation μ = 1.61 mm−1 T = 295 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.604, T max = 0.690 13614 measured reflections 3747 independent reflections 2973 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.134 S = 1.04 3747 reflections 205 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.66 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035751/xu5611sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035751/xu5611Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C13H11N4S)2(N3)2]F(000) = 732
Mr = 721.78Dx = 1.602 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4663 reflections
a = 11.2462 (12) Åθ = 3.0–28.3°
b = 7.2344 (10) ŵ = 1.61 mm1
c = 18.519 (2) ÅT = 295 K
β = 96.653 (5)°Prism, dark green
V = 1496.5 (3) Å30.35 × 0.30 × 0.25 mm
Z = 2
Bruker Kappa APEXII diffractometer3747 independent reflections
Radiation source: fine-focus sealed tube2973 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.075
ω scansθmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→15
Tmin = 0.604, Tmax = 0.690k = −9→9
13614 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0694P)2 + 0.1161P] where P = (Fo2 + 2Fc2)/3
3747 reflections(Δ/σ)max = 0.001
205 parametersΔρmax = 0.54 e Å3
2 restraintsΔρmin = −0.66 e Å3
xyzUiso*/Ueq
Cu10.40816 (2)0.66511 (5)0.521018 (15)0.03737 (14)
S10.31362 (6)0.55753 (11)0.61376 (3)0.0469 (2)
N10.24572 (17)0.7151 (3)0.47503 (10)0.0345 (4)
N20.14750 (19)0.6402 (3)0.50005 (12)0.0408 (5)
N30.0841 (2)0.4802 (5)0.59265 (14)0.0617 (8)
H10.023 (2)0.456 (6)0.5610 (15)0.074*
H20.101 (3)0.422 (5)0.6343 (12)0.074*
N40.44641 (18)0.8236 (3)0.43679 (11)0.0377 (5)
N50.5749 (2)0.6199 (4)0.55657 (12)0.0468 (6)
N60.6113 (2)0.5803 (4)0.61823 (13)0.0487 (6)
N70.6497 (3)0.5408 (5)0.67545 (14)0.0721 (9)
C10.1174 (2)0.8573 (3)0.37564 (12)0.0340 (5)
C20.0861 (3)0.7823 (4)0.30754 (14)0.0454 (6)
H2A0.14120.71090.28610.054*
C3−0.0264 (3)0.8127 (5)0.27110 (15)0.0506 (7)
H3−0.04700.76270.22510.061*
C4−0.1078 (2)0.9171 (5)0.30306 (16)0.0506 (7)
H4−0.18480.93390.27960.061*
C5−0.0752 (3)0.9963 (5)0.36967 (17)0.0556 (8)
H5−0.12941.07070.39060.067*
C60.0364 (2)0.9669 (4)0.40563 (14)0.0456 (6)
H60.05761.02160.45070.055*
C70.2345 (2)0.8130 (3)0.41657 (12)0.0335 (5)
C80.1738 (2)0.5609 (4)0.56389 (13)0.0414 (6)
C90.3482 (2)0.8757 (4)0.39278 (13)0.0349 (5)
C100.3555 (2)0.9761 (4)0.33033 (14)0.0438 (6)
H100.28661.01150.30100.053*
C110.4675 (3)1.0232 (5)0.31207 (16)0.0510 (7)
H110.47501.09100.27020.061*
C120.5668 (3)0.9688 (5)0.35637 (17)0.0546 (7)
H120.64280.99780.34460.065*
C130.5534 (2)0.8708 (4)0.41863 (16)0.0460 (6)
H130.62140.83640.44900.055*
U11U22U33U12U13U23
Cu10.03127 (19)0.0431 (2)0.0358 (2)0.00031 (11)−0.00433 (13)0.00303 (12)
S10.0438 (4)0.0589 (5)0.0356 (3)−0.0033 (3)−0.0049 (3)0.0100 (3)
N10.0312 (9)0.0386 (12)0.0328 (9)−0.0013 (8)−0.0002 (7)0.0049 (8)
N20.0332 (10)0.0478 (14)0.0404 (11)−0.0046 (9)−0.0003 (8)0.0132 (9)
N30.0541 (15)0.079 (2)0.0504 (14)−0.0192 (14)−0.0032 (11)0.0287 (14)
N40.0325 (10)0.0390 (13)0.0410 (11)−0.0018 (8)0.0018 (8)−0.0002 (8)
N50.0366 (11)0.0595 (16)0.0412 (12)0.0036 (11)−0.0092 (9)0.0006 (11)
N60.0408 (11)0.0518 (16)0.0499 (13)0.0046 (10)−0.0099 (10)−0.0094 (11)
N70.081 (2)0.083 (2)0.0462 (14)0.0153 (16)−0.0196 (13)−0.0044 (14)
C10.0341 (11)0.0368 (14)0.0308 (11)−0.0008 (9)0.0026 (9)0.0077 (9)
C20.0456 (14)0.0489 (17)0.0402 (13)0.0035 (12)−0.0013 (10)−0.0058 (12)
C30.0508 (16)0.061 (2)0.0370 (13)−0.0032 (13)−0.0064 (11)0.0039 (12)
C40.0367 (13)0.060 (2)0.0527 (15)0.0040 (12)−0.0052 (11)0.0219 (14)
C50.0421 (14)0.065 (2)0.0608 (17)0.0200 (14)0.0120 (12)0.0086 (15)
C60.0455 (14)0.0547 (18)0.0368 (12)0.0050 (12)0.0057 (10)0.0012 (11)
C70.0319 (11)0.0343 (14)0.0337 (11)0.0022 (9)0.0012 (9)0.0002 (9)
C80.0409 (13)0.0449 (17)0.0370 (12)−0.0025 (11)−0.0006 (10)0.0075 (10)
C90.0348 (11)0.0332 (13)0.0369 (11)−0.0001 (10)0.0050 (9)−0.0004 (9)
C100.0446 (14)0.0453 (17)0.0418 (13)−0.0020 (11)0.0062 (11)0.0050 (11)
C110.0551 (17)0.0497 (18)0.0508 (15)−0.0051 (13)0.0171 (13)0.0057 (13)
C120.0425 (14)0.055 (2)0.0695 (19)−0.0090 (13)0.0208 (13)−0.0018 (15)
C130.0336 (12)0.0482 (17)0.0557 (16)−0.0032 (11)0.0034 (11)−0.0029 (12)
Cu1—N51.942 (2)C2—C31.381 (4)
Cu1—N11.9578 (19)C2—H2A0.9300
Cu1—N42.022 (2)C3—C41.373 (4)
Cu1—S12.2603 (8)C3—H30.9300
Cu1—N5i2.533 (3)C4—C51.371 (5)
S1—C81.729 (3)C4—H40.9300
N1—C71.287 (3)C5—C61.368 (4)
N1—N21.359 (3)C5—H50.9300
N2—C81.316 (3)C6—H60.9300
N3—C81.329 (4)C7—C91.472 (3)
N3—H10.872 (10)C9—C101.376 (3)
N3—H20.879 (10)C10—C111.384 (4)
N4—C131.331 (3)C10—H100.9300
N4—C91.348 (3)C11—C121.364 (4)
N5—N61.202 (3)C11—H110.9300
N6—N71.134 (3)C12—C131.377 (4)
C1—C61.372 (4)C12—H120.9300
C1—C21.380 (4)C13—H130.9300
C1—C71.477 (3)
N5—Cu1—N1173.91 (9)C2—C3—H3120.1
N5—Cu1—N494.22 (9)C5—C4—C3119.7 (2)
N1—Cu1—N480.26 (8)C5—C4—H4120.1
N5—Cu1—S1101.84 (7)C3—C4—H4120.1
N1—Cu1—S184.08 (6)C6—C5—C4120.5 (3)
N4—Cu1—S1160.44 (7)C6—C5—H5119.7
N5—Cu1—N5i85.54 (9)C4—C5—H5119.7
N1—Cu1—N5i91.79 (8)C5—C6—C1120.5 (3)
N4—Cu1—N5i89.28 (8)C5—C6—H6119.8
S1—Cu1—N5i102.92 (6)C1—C6—H6119.8
C8—S1—Cu193.90 (9)N1—C7—C9114.7 (2)
C7—N1—N2120.1 (2)N1—C7—C1123.1 (2)
C7—N1—Cu1117.58 (17)C9—C7—C1122.3 (2)
N2—N1—Cu1122.15 (15)N2—C8—N3116.7 (2)
C8—N2—N1111.9 (2)N2—C8—S1125.6 (2)
C8—N3—H1114 (2)N3—C8—S1117.71 (19)
C8—N3—H2118 (3)N4—C9—C10122.1 (2)
H1—N3—H2124 (4)N4—C9—C7114.3 (2)
C13—N4—C9118.5 (2)C10—C9—C7123.6 (2)
C13—N4—Cu1128.30 (19)C9—C10—C11118.7 (3)
C9—N4—Cu1113.11 (16)C9—C10—H10120.7
N6—N5—Cu1124.8 (2)C11—C10—H10120.7
N7—N6—N5177.3 (3)C12—C11—C10119.1 (3)
C6—C1—C2119.1 (2)C12—C11—H11120.4
C6—C1—C7120.8 (2)C10—C11—H11120.4
C2—C1—C7120.1 (2)C11—C12—C13119.4 (3)
C1—C2—C3120.4 (3)C11—C12—H12120.3
C1—C2—H2A119.8C13—C12—H12120.3
C3—C2—H2A119.8N4—C13—C12122.2 (3)
C4—C3—C2119.8 (3)N4—C13—H13118.9
C4—C3—H3120.1C12—C13—H13118.9
N5—Cu1—S1—C8−167.21 (13)C2—C1—C6—C52.2 (4)
N1—Cu1—S1—C811.35 (12)C7—C1—C6—C5−175.2 (3)
N4—Cu1—S1—C848.2 (2)N2—N1—C7—C9−176.1 (2)
N5i—Cu1—S1—C8−79.13 (11)Cu1—N1—C7—C9−0.5 (3)
N4—Cu1—N1—C71.37 (19)N2—N1—C7—C13.0 (4)
S1—Cu1—N1—C7169.6 (2)Cu1—N1—C7—C1178.59 (18)
N5i—Cu1—N1—C7−87.6 (2)C6—C1—C7—N165.7 (4)
N4—Cu1—N1—N2176.9 (2)C2—C1—C7—N1−111.7 (3)
S1—Cu1—N1—N2−14.88 (19)C6—C1—C7—C9−115.3 (3)
N5i—Cu1—N1—N287.9 (2)C2—C1—C7—C967.3 (3)
C7—N1—N2—C8−173.5 (2)N1—N2—C8—N3−178.8 (3)
Cu1—N1—N2—C811.1 (3)N1—N2—C8—S12.6 (4)
N5—Cu1—N4—C13−0.4 (2)Cu1—S1—C8—N2−11.5 (3)
N1—Cu1—N4—C13−177.8 (3)Cu1—S1—C8—N3170.0 (3)
S1—Cu1—N4—C13144.9 (2)C13—N4—C9—C10−0.3 (4)
N5i—Cu1—N4—C13−85.9 (2)Cu1—N4—C9—C10−176.6 (2)
N5—Cu1—N4—C9175.44 (18)C13—N4—C9—C7178.6 (2)
N1—Cu1—N4—C9−1.97 (17)Cu1—N4—C9—C72.2 (3)
S1—Cu1—N4—C9−39.2 (3)N1—C7—C9—N4−1.2 (3)
N5i—Cu1—N4—C989.97 (18)C1—C7—C9—N4179.7 (2)
N4—Cu1—N5—N6155.8 (3)N1—C7—C9—C10177.6 (3)
S1—Cu1—N5—N6−13.0 (3)C1—C7—C9—C10−1.5 (4)
N5i—Cu1—N5—N6−115.3 (3)N4—C9—C10—C110.6 (4)
C6—C1—C2—C3−2.0 (4)C7—C9—C10—C11−178.1 (3)
C7—C1—C2—C3175.5 (3)C9—C10—C11—C120.0 (5)
C1—C2—C3—C4−0.5 (5)C10—C11—C12—C13−0.9 (5)
C2—C3—C4—C52.6 (5)C9—N4—C13—C12−0.7 (4)
C3—C4—C5—C6−2.3 (5)Cu1—N4—C13—C12175.0 (2)
C4—C5—C6—C1−0.1 (5)C11—C12—C13—N41.3 (5)
D—H···AD—HH···AD···AD—H···A
N3—H1···N2ii0.87 (1)2.22 (1)3.075 (3)168 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H1⋯N2i 0.87 (1)2.22 (1)3.075 (3)168 (4)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Compositional and structural variety of diphenyllead(IV) complexes obtained by reaction of diphenyllead dichloride with thiosemicarbazones.

Authors:  José S Casas; Eduardo E Castellano; J Ellena; María S García Tasende; Agustín Sánchez; José Sordo; María J Vidarte
Journal:  Inorg Chem       Date:  2003-04-21       Impact factor: 5.165

  2 in total

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