Literature DB >> 22969477

Diaqua-bis-{3-[4-(1H-imidazol-1-yl)phenyl]-5-(pyridin-2-yl-κN)-1H-1,2,4-triazol-1-ido-κN(1)}zinc.

You-Song Wang1, Guang-Mei Qiu, Cui-Juan Wang.   

Abstract

The centrosymmetric mol-ecule of the title compound, [Zn(C(16)H(11)N(6))(2)(H(2)O)(2)], contains one Zn(2+) ion located on a center of symmetry, two 3-[4-(1H-imidazol-1-yl)phen-yl]-5-(pyridin-2-yl)-1H-1,2,4-triazol-1-ide (Ippyt) ligands and two coordinating water mol-ecules. The Zn(II) ion is six-coordinated in a distorted octa-hedral coordination geometry by four N atoms from two Ippyt ligands and by two O atoms from two water mol-ecules. Adjacent units are inter-connected though O-H⋯N hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22969477      PMCID: PMC3435604          DOI: 10.1107/S1600536812035428

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar structures, see: Braga et al. (2005 ▶); Lin et al. (2010 ▶); Faulmann et al. (1990 ▶); Han et al. (2005 ▶); Xue et al. (2009 ▶).

Experimental

Crystal data

[Zn(C16H11N6)2(H2O)2] M = 676.04 Monoclinic, a = 12.6481 (9) Å b = 11.6659 (6) Å c = 10.4922 (7) Å β = 105.891 (7)° V = 1488.98 (16) Å3 Z = 2 Mo Kα radiation μ = 0.88 mm−1 T = 293 K 0.03 × 0.03 × 0.02 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.974, T max = 0.983 4938 measured reflections 2626 independent reflections 1724 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.109 S = 1.02 2626 reflections 214 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2005 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812035428/br2206sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035428/br2206Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C16H11N6)2(H2O)2]F(000) = 700
Mr = 676.04Dx = 1.512 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1141 reflections
a = 12.6481 (9) Åθ = 2.4–28.3°
b = 11.6659 (6) ŵ = 0.88 mm1
c = 10.4922 (7) ÅT = 293 K
β = 105.891 (7)°Block, colourless
V = 1488.98 (16) Å30.03 × 0.03 × 0.02 mm
Z = 2
Bruker SMART diffractometer2626 independent reflections
Radiation source: fine-focus sealed tube1724 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
φ and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→8
Tmin = 0.974, Tmax = 0.983k = −12→13
4938 measured reflectionsl = −8→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.0332P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02
2626 reflectionsΔρmax = 0.23 e Å3
214 parametersΔρmin = −0.29 e Å3
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.50000.00000.50000.0451 (2)
N10.4454 (2)0.1728 (2)0.4816 (3)0.0390 (8)
N20.6022 (2)0.0728 (2)0.6718 (3)0.0391 (8)
N30.6852 (2)0.0414 (3)0.7797 (3)0.0441 (8)
N40.6357 (2)0.2248 (2)0.8079 (3)0.0385 (8)
N51.0281 (2)0.1265 (3)1.3567 (3)0.0553 (9)
N61.1782 (3)0.0806 (3)1.5144 (4)0.0726 (12)
O10.62155 (17)0.04131 (19)0.3861 (3)0.0481 (7)
H1B0.63170.11340.38700.058*
H10.67990.00870.42000.072*
C10.3757 (3)0.2195 (3)0.3764 (4)0.0469 (10)
H1A0.34320.17290.30450.056*
C20.3496 (3)0.3348 (3)0.3698 (4)0.0516 (11)
H20.30240.36610.29380.062*
C30.3952 (3)0.4012 (3)0.4776 (4)0.0545 (11)
H30.37690.47840.47670.065*
C40.4682 (3)0.3549 (3)0.5884 (4)0.0474 (10)
H40.49940.40000.66230.057*
C50.4938 (2)0.2399 (3)0.5865 (4)0.0344 (8)
C60.5757 (3)0.1811 (3)0.6919 (4)0.0347 (8)
C70.7019 (3)0.1340 (3)0.8583 (4)0.0378 (9)
C80.7859 (3)0.1342 (3)0.9879 (4)0.0393 (9)
C90.7952 (3)0.2227 (3)1.0774 (4)0.0468 (10)
H90.74720.28461.05660.056*
C100.8756 (3)0.2204 (3)1.1987 (4)0.0510 (11)
H100.88150.28111.25780.061*
C110.9465 (3)0.1283 (3)1.2313 (4)0.0464 (10)
C120.9361 (3)0.0383 (4)1.1451 (5)0.0595 (12)
H120.9823−0.02491.16760.071*
C130.8562 (3)0.0414 (3)1.0237 (4)0.0559 (11)
H130.8500−0.01990.96550.067*
C141.0221 (4)0.1771 (6)1.4698 (5)0.113 (2)
H140.96520.22321.48060.136*
C151.1136 (4)0.1485 (5)1.5641 (5)0.114 (2)
H151.12990.17251.65190.137*
C161.1249 (3)0.0693 (4)1.3884 (5)0.0675 (13)
H161.15070.02691.32800.081*
U11U22U33U12U13U23
Zn10.0514 (4)0.0329 (3)0.0373 (4)0.0044 (3)−0.0112 (3)−0.0042 (4)
N10.0353 (16)0.0368 (18)0.037 (2)0.0012 (14)−0.0030 (14)0.0003 (16)
N20.0400 (17)0.0332 (17)0.0352 (19)0.0010 (13)−0.0049 (14)−0.0039 (15)
N30.0469 (18)0.0380 (18)0.036 (2)0.0023 (14)−0.0069 (15)−0.0009 (17)
N40.0367 (16)0.0354 (17)0.0371 (19)0.0015 (13)−0.0005 (14)−0.0029 (16)
N50.0367 (18)0.082 (2)0.040 (2)0.0157 (17)−0.0026 (15)−0.002 (2)
N60.049 (2)0.097 (3)0.056 (3)0.018 (2)−0.0124 (19)0.001 (3)
O10.0452 (14)0.0400 (14)0.0496 (18)0.0068 (11)−0.0032 (12)0.0066 (14)
C10.048 (2)0.048 (3)0.033 (2)0.0015 (18)−0.0066 (18)−0.001 (2)
C20.052 (2)0.045 (2)0.045 (3)0.0087 (19)−0.008 (2)0.005 (2)
C30.059 (3)0.038 (2)0.056 (3)0.0133 (19)−0.002 (2)0.000 (2)
C40.052 (2)0.037 (2)0.043 (3)0.0054 (18)−0.0035 (19)−0.008 (2)
C50.0328 (19)0.034 (2)0.033 (2)0.0002 (15)0.0020 (16)0.0004 (19)
C60.038 (2)0.033 (2)0.032 (2)−0.0027 (16)0.0065 (16)−0.0031 (18)
C70.035 (2)0.040 (2)0.034 (2)−0.0052 (16)0.0028 (16)−0.001 (2)
C80.034 (2)0.042 (2)0.036 (2)0.0027 (16)0.0006 (17)0.002 (2)
C90.044 (2)0.050 (2)0.041 (3)0.0092 (18)0.0016 (18)−0.003 (2)
C100.047 (2)0.060 (3)0.039 (2)0.008 (2)−0.0003 (19)−0.015 (2)
C110.040 (2)0.057 (3)0.035 (2)0.0064 (19)−0.0021 (17)0.001 (2)
C120.053 (3)0.057 (3)0.055 (3)0.020 (2)−0.007 (2)−0.003 (3)
C130.056 (2)0.050 (2)0.051 (3)0.009 (2)−0.003 (2)−0.010 (2)
C140.078 (4)0.202 (7)0.045 (3)0.071 (4)−0.008 (3)−0.024 (4)
C150.074 (4)0.209 (7)0.041 (3)0.057 (4)−0.015 (3)−0.018 (4)
C160.054 (3)0.075 (3)0.059 (3)0.017 (2)−0.009 (2)−0.005 (3)
Zn1—N2i2.090 (3)C2—C31.362 (5)
Zn1—N22.090 (3)C2—H20.9300
Zn1—N12.123 (3)C3—C41.381 (5)
Zn1—N1i2.123 (3)C3—H30.9300
Zn1—O1i2.243 (2)C4—C51.381 (4)
Zn1—O12.243 (2)C4—H40.9300
N1—C11.326 (4)C5—C61.463 (5)
N1—C51.353 (4)C7—C81.479 (5)
N2—C61.339 (4)C8—C91.378 (5)
N2—N31.366 (4)C8—C131.385 (5)
N3—C71.340 (4)C9—C101.396 (5)
N4—C61.346 (4)C9—H90.9300
N4—C71.365 (4)C10—C111.381 (5)
N5—C141.345 (6)C10—H100.9300
N5—C161.353 (5)C11—C121.368 (5)
N5—C111.433 (5)C12—C131.393 (5)
N6—C161.316 (6)C12—H120.9300
N6—C151.343 (6)C13—H130.9300
O1—H1B0.8500C14—C151.342 (6)
O1—H10.8199C14—H140.9300
C1—C21.382 (5)C15—H150.9300
C1—H1A0.9300C16—H160.9300
N2i—Zn1—N2180.0C3—C4—C5118.2 (4)
N2i—Zn1—N1101.45 (11)C3—C4—H4120.9
N2—Zn1—N178.55 (11)C5—C4—H4120.9
N2i—Zn1—N1i78.55 (11)N1—C5—C4121.2 (3)
N2—Zn1—N1i101.45 (11)N1—C5—C6114.4 (3)
N1—Zn1—N1i180.0C4—C5—C6124.4 (3)
N2i—Zn1—O1i91.13 (10)N2—C6—N4113.4 (3)
N2—Zn1—O1i88.87 (10)N2—C6—C5118.7 (3)
N1—Zn1—O1i89.95 (10)N4—C6—C5127.8 (3)
N1i—Zn1—O1i90.05 (10)N3—C7—N4114.3 (3)
N2i—Zn1—O188.87 (10)N3—C7—C8121.3 (3)
N2—Zn1—O191.13 (10)N4—C7—C8124.5 (3)
N1—Zn1—O190.05 (10)C9—C8—C13118.2 (3)
N1i—Zn1—O189.95 (10)C9—C8—C7122.2 (3)
O1i—Zn1—O1180.0C13—C8—C7119.6 (4)
C1—N1—C5119.3 (3)C8—C9—C10120.8 (3)
C1—N1—Zn1126.3 (3)C8—C9—H9119.6
C5—N1—Zn1114.3 (2)C10—C9—H9119.6
C6—N2—N3107.0 (3)C11—C10—C9120.1 (4)
C6—N2—Zn1113.4 (2)C11—C10—H10119.9
N3—N2—Zn1139.4 (2)C9—C10—H10119.9
C7—N3—N2104.4 (3)C12—C11—C10119.7 (4)
C6—N4—C7101.0 (3)C12—C11—N5120.7 (3)
C14—N5—C16105.4 (4)C10—C11—N5119.6 (4)
C14—N5—C11127.1 (3)C11—C12—C13119.9 (4)
C16—N5—C11127.4 (4)C11—C12—H12120.0
C16—N6—C15104.5 (4)C13—C12—H12120.0
Zn1—O1—H1B109.3C8—C13—C12121.3 (4)
Zn1—O1—H1109.7C8—C13—H13119.4
H1B—O1—H1109.8C12—C13—H13119.4
N1—C1—C2122.5 (4)C15—C14—N5107.2 (4)
N1—C1—H1A118.8C15—C14—H14126.4
C2—C1—H1A118.8N5—C14—H14126.4
C3—C2—C1118.1 (4)C14—C15—N6110.7 (5)
C3—C2—H2121.0C14—C15—H15124.6
C1—C2—H2121.0N6—C15—H15124.6
C2—C3—C4120.7 (3)N6—C16—N5112.2 (4)
C2—C3—H3119.7N6—C16—H16123.9
C4—C3—H3119.7N5—C16—H16123.9
D—H···AD—HH···AD···AD—H···A
O1—H1···N6ii0.822.032.842 (4)174
O1—H1B···N4iii0.852.072.868 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N6i 0.822.032.842 (4)174
O1—H1B⋯N4ii 0.852.072.868 (4)157

Symmetry codes: (i) ; (ii) .

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