| Literature DB >> 22969459 |
Qiaozhen Sun1, Songyi Liao, Junjun Yao, Junke Wang, Qiongjiali Fang.
Abstract
The title compound, (C(5)H(7)N(2))(2)[CdI(4)]·H(2)O, contains one [CdI(4)](2-) anion, two prontonated 4-amino-pyridine mol-ecules and one water mol-ecule in the asymmetric unit. In the anion, the Cd(II) atom is coordinated by four I atoms in a slightly distorted tetra-hedral geometry. The [CdI(4)](2-) anion and the water mol-ecule are bis-ected by a crystallographic mirror plane perpendicular to the c-axis direction, with the Cd(II) atom, two of the I atoms and the atoms of the water mol-ecule located on this plane. The crystal packing is stabilized by inter-molecular N-H⋯I, N-H⋯O and O-H⋯I hydrogen bonds and by π-π stacking inter-actions [centroid-centroid distance = 3.798 (3) Å) between pyridine rings, which build up a three-dimensional network.Entities:
Year: 2012 PMID: 22969459 PMCID: PMC3435586 DOI: 10.1107/S1600536812034447
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C5H7N2)2[CdI4]·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: -P2c2b | Cell parameters from 7689 reflections |
| θ = 2.6–28.2° | |
| µ = 7.12 mm−1 | |
| Block, colourless | |
| 0.40 × 0.24 × 0.20 mm |
| Bruker SMART CCD diffractometer | 1860 independent reflections |
| Radiation source: fine-focus sealed tube | 1755 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 11964 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 1860 reflections | Δρmax = 0.91 e Å−3 |
| 102 parameters | Δρmin = −0.72 e Å−3 |
| 3 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00433 (17) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cd1 | 1.01826 (6) | 0.20199 (3) | 0.2500 | 0.03793 (14) | |
| I1 | 0.64576 (5) | 0.22518 (3) | 0.2500 | 0.03959 (14) | |
| I2 | 1.14547 (4) | 0.28284 (2) | 0.125323 (15) | 0.04579 (13) | |
| I3 | 1.11401 (5) | 0.01921 (3) | 0.2500 | 0.04403 (15) | |
| N1 | 0.6396 (7) | 0.4593 (3) | −0.11682 (19) | 0.0606 (12) | |
| H1B | 0.6371 | 0.4870 | −0.1572 | 0.073* | |
| N2 | 0.6522 (6) | 0.3361 (3) | 0.0766 (2) | 0.0617 (11) | |
| H2A | 0.5548 | 0.3145 | 0.0950 | 0.074* | |
| H2B | 0.7526 | 0.3324 | 0.0996 | 0.074* | |
| C1 | 0.4861 (8) | 0.4240 (3) | −0.0903 (2) | 0.0588 (13) | |
| H1A | 0.3794 | 0.4282 | −0.1163 | 0.071* | |
| C2 | 0.4861 (6) | 0.3821 (3) | −0.0254 (2) | 0.0467 (10) | |
| H2C | 0.3797 | 0.3583 | −0.0067 | 0.056* | |
| C3 | 0.6476 (6) | 0.3755 (3) | 0.0125 (2) | 0.0407 (9) | |
| C4 | 0.8047 (7) | 0.4105 (3) | −0.0187 (3) | 0.0547 (11) | |
| H4A | 0.9155 | 0.4048 | 0.0043 | 0.066* | |
| C5 | 0.7938 (8) | 0.4524 (3) | −0.0821 (3) | 0.0626 (13) | |
| H5A | 0.8977 | 0.4772 | −0.1021 | 0.075* | |
| OW1 | 0.4000 (7) | 0.4442 (3) | 0.2500 | 0.0552 (11) | |
| HW1A | 0.355 (5) | 0.3924 (19) | 0.2500 | 0.083* | |
| HW1B | 0.514 (3) | 0.439 (3) | 0.2500 | 0.083* |
| Cd1 | 0.0368 (3) | 0.0395 (3) | 0.0375 (2) | 0.00051 (18) | 0.000 | 0.000 |
| I1 | 0.0341 (2) | 0.0429 (2) | 0.0418 (2) | 0.00329 (15) | 0.000 | 0.000 |
| I2 | 0.0395 (2) | 0.0539 (2) | 0.04392 (19) | 0.00186 (12) | 0.00688 (10) | 0.01025 (11) |
| I3 | 0.0430 (3) | 0.0383 (2) | 0.0508 (2) | 0.00445 (16) | 0.000 | 0.000 |
| N1 | 0.101 (4) | 0.046 (2) | 0.0349 (18) | −0.001 (2) | 0.0029 (19) | 0.0039 (16) |
| N2 | 0.059 (3) | 0.072 (3) | 0.054 (2) | −0.008 (2) | −0.0031 (17) | 0.022 (2) |
| C1 | 0.077 (4) | 0.049 (3) | 0.051 (2) | 0.002 (3) | −0.018 (2) | −0.009 (2) |
| C2 | 0.048 (3) | 0.044 (2) | 0.048 (2) | −0.002 (2) | −0.0030 (19) | −0.0044 (18) |
| C3 | 0.047 (3) | 0.033 (2) | 0.042 (2) | 0.0019 (17) | 0.0029 (16) | 0.0002 (16) |
| C4 | 0.048 (3) | 0.056 (3) | 0.061 (3) | 0.002 (2) | 0.008 (2) | 0.006 (2) |
| C5 | 0.071 (4) | 0.061 (3) | 0.056 (3) | 0.000 (3) | 0.023 (3) | 0.001 (2) |
| OW1 | 0.067 (3) | 0.051 (3) | 0.047 (2) | 0.001 (2) | 0.000 | 0.000 |
| Cd1—I1 | 2.7771 (6) | C1—C2 | 1.363 (6) |
| Cd1—I3 | 2.7849 (6) | C1—H1A | 0.9300 |
| Cd1—I2i | 2.7852 (4) | C2—C3 | 1.394 (6) |
| Cd1—I2 | 2.7852 (4) | C2—H2C | 0.9300 |
| N1—C5 | 1.317 (7) | C3—C4 | 1.400 (6) |
| N1—C1 | 1.345 (7) | C4—C5 | 1.341 (7) |
| N1—H1B | 0.8600 | C4—H4A | 0.9300 |
| N2—C3 | 1.333 (5) | C5—H5A | 0.9300 |
| N2—H2A | 0.8600 | OW1—HW1A | 0.83 (2) |
| N2—H2B | 0.8600 | OW1—HW1B | 0.85 (2) |
| I1—Cd1—I3 | 111.805 (18) | C2—C1—H1A | 119.8 |
| I1—Cd1—I2i | 106.423 (13) | C1—C2—C3 | 119.1 (5) |
| I3—Cd1—I2i | 109.129 (13) | C1—C2—H2C | 120.5 |
| I1—Cd1—I2 | 106.423 (13) | C3—C2—H2C | 120.5 |
| I3—Cd1—I2 | 109.129 (13) | N2—C3—C2 | 120.8 (4) |
| I2i—Cd1—I2 | 113.94 (2) | N2—C3—C4 | 121.0 (4) |
| C5—N1—C1 | 121.2 (4) | C2—C3—C4 | 118.3 (4) |
| C5—N1—H1B | 119.4 | C5—C4—C3 | 119.3 (5) |
| C1—N1—H1B | 119.4 | C5—C4—H4A | 120.3 |
| C3—N2—H2A | 120.0 | C3—C4—H4A | 120.3 |
| C3—N2—H2B | 120.0 | N1—C5—C4 | 121.7 (5) |
| H2A—N2—H2B | 120.0 | N1—C5—H5A | 119.1 |
| N1—C1—C2 | 120.3 (5) | C4—C5—H5A | 119.1 |
| N1—C1—H1A | 119.8 | HW1A—OW1—HW1B | 108 (3) |
| H··· | ||||
| N1—H1 | 0.86 | 2.03 | 2.886 (5) | 173 |
| N2—H2 | 0.86 | 3.12 | 3.938 (4) | 161 |
| N2—H2 | 0.86 | 3.04 | 3.843 (4) | 157 |
| O | 0.83 (2) | 3.24 (1) | 3.828 (4) | 130 (1) |
| O | 0.83 (2) | 3.24 (1) | 3.828 (4) | 130 (1) |
| O | 0.83 (2) | 3.27 (4) | 3.704 (5) | 116 (3) |
| O | 0.85 (2) | 2.99 (2) | 3.761 (5) | 152 (4) |
| O | 0.83 (2) | 3.27 (4) | 3.704 (5) | 116 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.03 | 2.886 (5) | 173 |
| N2—H2 | 0.86 | 3.12 | 3.938 (4) | 161 |
| N2—H2 | 0.86 | 3.04 | 3.843 (4) | 157 |
| O | 0.83 (2) | 3.24 (1) | 3.828 (4) | 130 (1) |
| O | 0.83 (2) | 3.24 (1) | 3.828 (4) | 130 (1) |
| O | 0.83 (2) | 3.27 (4) | 3.704 (5) | 116 (3) |
| O | 0.85 (2) | 2.99 (2) | 3.761 (5) | 152 (4) |
| O | 0.83 (2) | 3.27 (4) | 3.704 (5) | 116 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .