Literature DB >> 22969459

Bis(4-amino-pyridinium) tetra-iodido-cad-mate monohydrate.

Qiaozhen Sun1, Songyi Liao, Junjun Yao, Junke Wang, Qiongjiali Fang.   

Abstract

The title compound, (C(5)H(7)N(2))(2)[CdI(4)]·H(2)O, contains one [CdI(4)](2-) anion, two prontonated 4-amino-pyridine mol-ecules and one water mol-ecule in the asymmetric unit. In the anion, the Cd(II) atom is coordinated by four I atoms in a slightly distorted tetra-hedral geometry. The [CdI(4)](2-) anion and the water mol-ecule are bis-ected by a crystallographic mirror plane perpendicular to the c-axis direction, with the Cd(II) atom, two of the I atoms and the atoms of the water mol-ecule located on this plane. The crystal packing is stabilized by inter-molecular N-H⋯I, N-H⋯O and O-H⋯I hydrogen bonds and by π-π stacking inter-actions [centroid-centroid distance = 3.798 (3) Å) between pyridine rings, which build up a three-dimensional network.

Entities:  

Year:  2012        PMID: 22969459      PMCID: PMC3435586          DOI: 10.1107/S1600536812034447

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature on the magnetism, anti­viral activity and luminescence of organic–inorganic hybrid compounds, see: Bauer et al. (2003 ▶); Cavicchioli et al. (2010 ▶); Li et al. (2007 ▶). For ion channel inhibitor properties of 4-amino­pyridine, see: Picolo et al. (2003 ▶). For metal complexes of 4-amino­pyridine, see: Das et al. (2010 ▶); Ivanova et al. (2005 ▶); Jebas et al. (2009 ▶); Kulicka et al. (2006 ▶); Rademeyer et al. (2007 ▶); Zaouali Zgolli et al. (2009 ▶). For bond-length data, see: Anderson et al. (2005 ▶); Hines et al. (2006 ▶).

Experimental

Crystal data

(C5H7N2)2[CdI4H2O M = 828.27 Orthorhombic, a = 7.3987 (2) Å b = 14.7348 (4) Å c = 18.7286 (4) Å V = 2041.76 (9) Å3 Z = 4 Mo Kα radiation μ = 7.12 mm−1 T = 293 K 0.40 × 0.24 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.145, T max = 0.340 11964 measured reflections 1860 independent reflections 1755 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.064 S = 1.02 1860 reflections 102 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.91 e Å−3 Δρmin = −0.72 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global. DOI: 10.1107/S1600536812034447/zl2495sup1.cif Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H7N2)2[CdI4]·H2OF(000) = 1488
Mr = 828.27Dx = 2.694 Mg m3
Orthorhombic, PbcmMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2c2bCell parameters from 7689 reflections
a = 7.3987 (2) Åθ = 2.6–28.2°
b = 14.7348 (4) ŵ = 7.12 mm1
c = 18.7286 (4) ÅT = 293 K
V = 2041.76 (9) Å3Block, colourless
Z = 40.40 × 0.24 × 0.20 mm
Bruker SMART CCD diffractometer1860 independent reflections
Radiation source: fine-focus sealed tube1755 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.052
φ and ω scansθmax = 25.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.145, Tmax = 0.340k = −17→14
11964 measured reflectionsl = −22→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.064w = 1/[σ2(Fo2) + (0.0406P)2 + 1.5671P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
1860 reflectionsΔρmax = 0.91 e Å3
102 parametersΔρmin = −0.72 e Å3
3 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00433 (17)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd11.01826 (6)0.20199 (3)0.25000.03793 (14)
I10.64576 (5)0.22518 (3)0.25000.03959 (14)
I21.14547 (4)0.28284 (2)0.125323 (15)0.04579 (13)
I31.11401 (5)0.01921 (3)0.25000.04403 (15)
N10.6396 (7)0.4593 (3)−0.11682 (19)0.0606 (12)
H1B0.63710.4870−0.15720.073*
N20.6522 (6)0.3361 (3)0.0766 (2)0.0617 (11)
H2A0.55480.31450.09500.074*
H2B0.75260.33240.09960.074*
C10.4861 (8)0.4240 (3)−0.0903 (2)0.0588 (13)
H1A0.37940.4282−0.11630.071*
C20.4861 (6)0.3821 (3)−0.0254 (2)0.0467 (10)
H2C0.37970.3583−0.00670.056*
C30.6476 (6)0.3755 (3)0.0125 (2)0.0407 (9)
C40.8047 (7)0.4105 (3)−0.0187 (3)0.0547 (11)
H4A0.91550.40480.00430.066*
C50.7938 (8)0.4524 (3)−0.0821 (3)0.0626 (13)
H5A0.89770.4772−0.10210.075*
OW10.4000 (7)0.4442 (3)0.25000.0552 (11)
HW1A0.355 (5)0.3924 (19)0.25000.083*
HW1B0.514 (3)0.439 (3)0.25000.083*
U11U22U33U12U13U23
Cd10.0368 (3)0.0395 (3)0.0375 (2)0.00051 (18)0.0000.000
I10.0341 (2)0.0429 (2)0.0418 (2)0.00329 (15)0.0000.000
I20.0395 (2)0.0539 (2)0.04392 (19)0.00186 (12)0.00688 (10)0.01025 (11)
I30.0430 (3)0.0383 (2)0.0508 (2)0.00445 (16)0.0000.000
N10.101 (4)0.046 (2)0.0349 (18)−0.001 (2)0.0029 (19)0.0039 (16)
N20.059 (3)0.072 (3)0.054 (2)−0.008 (2)−0.0031 (17)0.022 (2)
C10.077 (4)0.049 (3)0.051 (2)0.002 (3)−0.018 (2)−0.009 (2)
C20.048 (3)0.044 (2)0.048 (2)−0.002 (2)−0.0030 (19)−0.0044 (18)
C30.047 (3)0.033 (2)0.042 (2)0.0019 (17)0.0029 (16)0.0002 (16)
C40.048 (3)0.056 (3)0.061 (3)0.002 (2)0.008 (2)0.006 (2)
C50.071 (4)0.061 (3)0.056 (3)0.000 (3)0.023 (3)0.001 (2)
OW10.067 (3)0.051 (3)0.047 (2)0.001 (2)0.0000.000
Cd1—I12.7771 (6)C1—C21.363 (6)
Cd1—I32.7849 (6)C1—H1A0.9300
Cd1—I2i2.7852 (4)C2—C31.394 (6)
Cd1—I22.7852 (4)C2—H2C0.9300
N1—C51.317 (7)C3—C41.400 (6)
N1—C11.345 (7)C4—C51.341 (7)
N1—H1B0.8600C4—H4A0.9300
N2—C31.333 (5)C5—H5A0.9300
N2—H2A0.8600OW1—HW1A0.83 (2)
N2—H2B0.8600OW1—HW1B0.85 (2)
I1—Cd1—I3111.805 (18)C2—C1—H1A119.8
I1—Cd1—I2i106.423 (13)C1—C2—C3119.1 (5)
I3—Cd1—I2i109.129 (13)C1—C2—H2C120.5
I1—Cd1—I2106.423 (13)C3—C2—H2C120.5
I3—Cd1—I2109.129 (13)N2—C3—C2120.8 (4)
I2i—Cd1—I2113.94 (2)N2—C3—C4121.0 (4)
C5—N1—C1121.2 (4)C2—C3—C4118.3 (4)
C5—N1—H1B119.4C5—C4—C3119.3 (5)
C1—N1—H1B119.4C5—C4—H4A120.3
C3—N2—H2A120.0C3—C4—H4A120.3
C3—N2—H2B120.0N1—C5—C4121.7 (5)
H2A—N2—H2B120.0N1—C5—H5A119.1
N1—C1—C2120.3 (5)C4—C5—H5A119.1
N1—C1—H1A119.8HW1A—OW1—HW1B108 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1B···OW1ii0.862.032.886 (5)173
N2—H2A···I2iii0.863.123.938 (4)161
N2—H2B···I20.863.043.843 (4)157
OW1—HW1A···I2iii0.83 (2)3.24 (1)3.828 (4)130 (1)
OW1—HW1A···I2iv0.83 (2)3.24 (1)3.828 (4)130 (1)
OW1—HW1A···I10.83 (2)3.27 (4)3.704 (5)116 (3)
OW1—HW1B···I3v0.85 (2)2.99 (2)3.761 (5)152 (4)
OW1—HW1A···I10.83 (2)3.27 (4)3.704 (5)116 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1B⋯OW1i 0.862.032.886 (5)173
N2—H2A⋯I2ii 0.863.123.938 (4)161
N2—H2B⋯I20.863.043.843 (4)157
OW1—HW1A⋯I2ii 0.83 (2)3.24 (1)3.828 (4)130 (1)
OW1—HW1A⋯I2iii 0.83 (2)3.24 (1)3.828 (4)130 (1)
OW1—HW1A⋯I10.83 (2)3.27 (4)3.704 (5)116 (3)
OW1—HW1B⋯I3iv 0.85 (2)2.99 (2)3.761 (5)152 (4)
OW1—HW1A⋯I10.83 (2)3.27 (4)3.704 (5)116 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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