Literature DB >> 22969036

Creating a community resource for protein science.

Helen M Berman1.   

Abstract

In addition to being one of the early pioneers in protein crystallography, Carl Brändén made significant contributions to science education with his elegant and beautifully illustrated book Introduction to Protein Structure (Brändén and Tooze, New York: Garland, 1991). It is truly an honor to receive this award in their names. This award and the 40th anniversary of the Protein Data Bank (PDB; Berman et al., Structure 2012;20:391-396) have given me an opportunity to reflect on the various components that have contributed to building a resource for protein science and to try to quantify the impact of having PDB data openly available.
Copyright © 2012 The Protein Society.

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Year:  2012        PMID: 22969036      PMCID: PMC3527698          DOI: 10.1002/pro.2154

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  59 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Structures of HIV-1 gp120 envelope glycoproteins from laboratory-adapted and primary isolates.

Authors:  P D Kwong; R Wyatt; S Majeed; J Robinson; R W Sweet; J Sodroski; W A Hendrickson
Journal:  Structure       Date:  2000-12-15       Impact factor: 5.006

3.  Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding.

Authors:  J C Chen; J Krucinski; L J Miercke; J S Finer-Moore; A H Tang; A D Leavitt; R M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

4.  1H-13C nuclear magnetic resonance assignment and structural characterization of HIV-1 Tat protein.

Authors:  J M Péloponèse; C Grégoire; S Opi; D Esquieu; J Sturgis; E Lebrun; E Meurs; Y Collette; D Olive; A M Aubertin; M Witvrow; C Pannecouque; E De Clercq; C Bailly; J Lebreton; E P Loret
Journal:  C R Acad Sci III       Date:  2000-10

5.  E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.

Authors:  H Boutselakis; D Dimitropoulos; J Fillon; A Golovin; K Henrick; A Hussain; J Ionides; M John; P A Keller; E Krissinel; P McNeil; A Naim; R Newman; T Oldfield; J Pineda; A Rachedi; J Copeland; A Sitnov; S Sobhany; A Suarez-Uruena; J Swaminathan; M Tagari; J Tate; S Tromm; S Velankar; W Vranken
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  KB-Rank: efficient protein structure and functional annotation identification via text query.

Authors:  Elchin S Julfayev; Ryan J McLaughlin; Yi-Ping Tao; William A McLaughlin
Journal:  J Struct Funct Genomics       Date:  2012-01-21

7.  Crystallographic studies of the catalytic and a second site in fumarase C from Escherichia coli.

Authors:  T Weaver; L Banaszak
Journal:  Biochemistry       Date:  1996-11-05       Impact factor: 3.162

8.  Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA.

Authors:  S G Sarafianos; K Das; C Tantillo; A D Clark; J Ding; J M Whitcomb; P L Boyer; S H Hughes; E Arnold
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

9.  NMR structure of the HIV-1 regulatory protein Vpr in H2O/trifluoroethanol. Comparison with the Vpr N-terminal (1-51) and C-terminal (52-96) domains.

Authors:  K Wecker; N Morellet; S Bouaziz; B P Roques
Journal:  Eur J Biochem       Date:  2002-08

10.  Crystal structures of the trimeric human immunodeficiency virus type 1 matrix protein: implications for membrane association and assembly.

Authors:  C P Hill; D Worthylake; D P Bancroft; A M Christensen; W I Sundquist
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-02       Impact factor: 11.205

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  2 in total

1.  Protein-protein interactions: general trends in the relationship between binding affinity and interfacial buried surface area.

Authors:  Jieming Chen; Nicholas Sawyer; Lynne Regan
Journal:  Protein Sci       Date:  2013-02-26       Impact factor: 6.725

Review 2.  Trendspotting in the Protein Data Bank.

Authors:  Helen M Berman; Buvaneswari Coimbatore Narayanan; Luigi Di Costanzo; Shuchismita Dutta; Sutapa Ghosh; Brian P Hudson; Catherine L Lawson; Ezra Peisach; Andreas Prlić; Peter W Rose; Chenghua Shao; Huanwang Yang; Jasmine Young; Christine Zardecki
Journal:  FEBS Lett       Date:  2013-01-18       Impact factor: 4.124

  2 in total

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