Literature DB >> 22966187

Complete genome sequence of bacteriophage SSU5 specific for Salmonella enterica serovar Typhimurium rough strains.

Minsik Kim1, Sujin Kim, Sangryeol Ryu.   

Abstract

Salmonella enterica serovar Typhimurium rough strain-specific phage SSU5 was isolated, and its whole genome was sequenced. The 103,229-bp-long double-stranded DNA genome of SSU5 encodes 130 open reading frames with one tRNA for asparagine. Genomic analysis revealed that SSU5 might be the phylogenetic origin of cryptic plasmid pHCM2 harbored by Salmonella Typhi CT18.

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Year:  2012        PMID： 22966187      PMCID： PMC3457314          DOI： 10.1128/JVI.01796-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  7 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

3.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Characterisation and distribution of a cryptic Salmonella typhi plasmid pHCM2.

Authors:  Claire Kidgell; Derek Pickard; John Wain; Keith James; L T Diem Nga; To Song Diep; Myron M Levine; Peadar O'Gaora; Michael B Prentice; Julian Parkhill; Nicholas Day; Jeremy Farrar; Gordon Dougan
Journal:  Plasmid       Date:  2002-05       Impact factor: 3.466

7.  CDD: a conserved domain database for interactive domain family analysis.

Authors:  Aron Marchler-Bauer; John B Anderson; Myra K Derbyshire; Carol DeWeese-Scott; Noreen R Gonzales; Marc Gwadz; Luning Hao; Siqian He; David I Hurwitz; John D Jackson; Zhaoxi Ke; Dmitri Krylov; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Fu Lu; Shennan Lu; Gabriele H Marchler; Mikhail Mullokandov; James S Song; Narmada Thanki; Roxanne A Yamashita; Jodie J Yin; Dachuan Zhang; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2006-11-29       Impact factor: 16.971
  7 in total
  15 in total

1.  The genome sequence of Escherichia coli tailed phage D6 and the diversity of Enterobacteriales circular plasmid prophages.

Authors:  Eddie B Gilcrease; Sherwood R Casjens
Journal:  Virology       Date:  2018-01-02       Impact factor: 3.616

2.  Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae.

Authors:  Julianne H Grose; Sherwood R Casjens
Journal:  Virology       Date:  2014-11       Impact factor: 3.616

3.  Core lipopolysaccharide-specific phage SSU5 as an Auxiliary Component of a Phage Cocktail for Salmonella biocontrol.

Authors:  Minsik Kim; Sujin Kim; Bookyung Park; Sangryeol Ryu
Journal:  Appl Environ Microbiol       Date:  2013-11-22       Impact factor: 4.792

4.  Complete sequence of pABTJ2, a plasmid from Acinetobacter baumannii MDR-TJ, carrying many phage-like elements.

Authors:  He Huang; Yan Dong; Zhi-Liang Yang; Hao Luo; Xi Zhang; Feng Gao
Journal:  Genomics Proteomics Bioinformatics       Date:  2014-07-19       Impact factor: 7.691

5.  Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences.

Authors:  Val F Lanza; María de Toro; M Pilar Garcillán-Barcia; Azucena Mora; Jorge Blanco; Teresa M Coque; Fernando de la Cruz
Journal:  PLoS Genet       Date:  2014-12-18       Impact factor: 5.917

6.  Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.

Authors:  Sara Lomonaco; Matthew A Crawford; Christine Lascols; Ruth E Timme; Kevin Anderson; David R Hodge; Debra J Fisher; Segaran P Pillai; Stephen A Morse; Erum Khan; Molly A Hughes; Marc W Allard; Shashi K Sharma
Journal:  PLoS One       Date:  2018-06-08       Impact factor: 3.752

7.  A widespread toxin-antitoxin system exploiting growth control via alarmone signaling.

Authors:  Steffi Jimmy; Chayan Kumar Saha; Tatsuaki Kurata; Constantine Stavropoulos; Sofia Raquel Alves Oliveira; Alan Koh; Albinas Cepauskas; Hiraku Takada; Dominik Rejman; Tanel Tenson; Henrik Strahl; Abel Garcia-Pino; Vasili Hauryliuk; Gemma C Atkinson
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-28       Impact factor: 11.205

8.  Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks.

Authors:  Mark R Wilson; Eric Brown; Chris Keys; Errol Strain; Yan Luo; Tim Muruvanda; Christopher Grim; Junia Jean-Gilles Beaubrun; Karen Jarvis; Laura Ewing; Gopal Gopinath; Darcy Hanes; Marc W Allard; Steven Musser
Journal:  PLoS One       Date:  2016-06-03       Impact factor: 3.240

9.  Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats.

Authors:  Ileana P Salto; Gonzalo Torres Tejerizo; Daniel Wibberg; Alfred Pühler; Andreas Schlüter; Mariano Pistorio
Journal:  Sci Rep       Date:  2018-05-17       Impact factor: 4.379

10.  Characterization of the plasmid of incompatibility groups IncFIIpKF727591 and IncpKPHS1 from Enterobacteriaceae species.

Authors:  Shujie Wang; Erhei Dai; Xiaoyuan Jiang; Lijun Zeng; Qiaoxiang Cheng; Ying Jing; Lingfei Hu; Zhe Yin; Bo Gao; Jinglin Wang; Guixin Duan; Xuehui Cai; Dongsheng Zhou
Journal:  Infect Drug Resist       Date:  2019-09-06       Impact factor: 4.003
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