Literature DB >> 22965104

Genome sequences of Brucella melitensis 16M and its two derivatives 16M1w and 16M13w, which evolved in vivo.

Yuehua Ke1, Xitong Yuan, Yufei Wang, Yaoxia Bai, Jie Xu, Hongbin Song, Liuyu Huang, Zeliang Chen.   

Abstract

Brucella melitensis is an intracellular pathogen that induces chronic infection in humans. Here, we report the genome sequences of 16M and its two derivatives, 16M1w and 16M13w, which were allowed to adapt in vivo for 1 and 13 weeks, respectively. Our findings contribute to the investigation of adaptive mutations and mechanisms of chronic infection by B. melitensis.

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Year:  2012        PMID： 22965104      PMCID： PMC3457236          DOI： 10.1128/JB.01293-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

Review 1.  Internal affairs: investigating the Brucella intracellular lifestyle.

Authors:  Kristine von Bargen; Jean-Pierre Gorvel; Suzana P Salcedo
Journal:  FEMS Microbiol Rev       Date:  2012-03-22       Impact factor: 16.408

Review 2.  Next-generation sequencing as a tool to study microbial evolution.

Authors:  Michael A Brockhurst; Nick Colegrave; Daniel E Rozen
Journal:  Mol Ecol       Date:  2010-09-27       Impact factor: 6.185

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Estimating the mutation rate of Mycobacterium tuberculosis during infection.

Authors:  David R Sherman; Sebastien Gagneux
Journal:  Nat Genet       Date:  2011-05       Impact factor: 38.330

Review 5.  Microbial laboratory evolution in the era of genome-scale science.

Authors:  Tom M Conrad; Nathan E Lewis; Bernhard Ø Palsson
Journal:  Mol Syst Biol       Date:  2011-07-05       Impact factor: 11.429

6.  Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection.

Authors:  Christopher B Ford; Philana Ling Lin; Michael R Chase; Rupal R Shah; Oleg Iartchouk; James Galagan; Nilofar Mohaideen; Thomas R Ioerger; James C Sacchettini; Marc Lipsitch; JoAnne L Flynn; Sarah M Fortune
Journal:  Nat Genet       Date:  2011-04-24       Impact factor: 38.330

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

8.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  8 in total
  7 in total

1.  Brucella BioR regulator defines a complex regulatory mechanism for bacterial biotin metabolism.

Authors:  Youjun Feng; Jie Xu; Huimin Zhang; Zeliang Chen; Swaminath Srinivas
Journal:  J Bacteriol       Date:  2013-05-31       Impact factor: 3.490

2.  Paracoccus denitrificans possesses two BioR homologs having a role in regulation of biotin metabolism.

Authors:  Youjun Feng; Ritesh Kumar; Dmitry A Ravcheev; Huimin Zhang
Journal:  Microbiologyopen       Date:  2015-06-02       Impact factor: 3.139

3.  Full genome SNP-based phylogenetic analysis reveals the origin and global spread of Brucella melitensis.

Authors:  Kim-Kee Tan; Yung-Chie Tan; Li-Yen Chang; Kok Wei Lee; Siti Sarah Nore; Wai-Yan Yee; Mohd Noor Mat Isa; Faizatul Lela Jafar; Chee-Choong Hoh; Sazaly AbuBakar
Journal:  BMC Genomics       Date:  2015-02-18       Impact factor: 3.969

4.  Whole genome sequencing of Brucella melitensis isolated from 57 patients in Germany reveals high diversity in strains from Middle East.

Authors:  Enrico Georgi; Mathias C Walter; Marie-Theres Pfalzgraf; Bernd H Northoff; Lesca M Holdt; Holger C Scholz; Lothar Zoeller; Sabine Zange; Markus H Antwerpen
Journal:  PLoS One       Date:  2017-04-07       Impact factor: 3.240

5.  Comparative Genomics and in vitro Infection of Field Clonal Isolates of Brucella melitensis Biovar 3 Did Not Identify Signature of Host Adaptation.

Authors:  Marion Holzapfel; Guillaume Girault; Anne Keriel; Claire Ponsart; David O'Callaghan; Virginie Mick
Journal:  Front Microbiol       Date:  2018-10-22       Impact factor: 5.640

6.  Global evolution and phylogeography of Brucella melitensis strains.

Authors:  Sergey V Pisarenko; Dmitry A Kovalev; Anna S Volynkina; Dmitry G Ponomarenko; Diana V Rusanova; Nina V Zharinova; Anna A Khachaturova; Lyudmila E Tokareva; Irina G Khvoynova; Alexander N Kulichenko
Journal:  BMC Genomics       Date:  2018-05-10       Impact factor: 3.969

Review 7.  Brucella Genomics: Macro and Micro Evolution.

Authors:  Marcela Suárez-Esquivel; Esteban Chaves-Olarte; Edgardo Moreno; Caterina Guzmán-Verri
Journal:  Int J Mol Sci       Date:  2020-10-20       Impact factor: 5.923
  7 in total

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