Literature DB >> 22965055

Silicon dreams of cells into symbols.

Jeremy Gunawardena.   

Abstract

Mesh：

Year:  2012        PMID： 22965055     DOI： 10.1038/nbt.2358

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  14 in total

Review 1.  Toward large-scale modeling of the microbial cell for computer simulation.

Authors:  Nobuyoshi Ishii; Martin Robert; Yoichi Nakayama; Akio Kanai; Masaru Tomita
Journal:  J Biotechnol       Date:  2004-09-30       Impact factor: 3.307

2.  Organizational invariance and metabolic closure: analysis in terms of (M,R) systems.

Authors:  Juan-Carlos Letelier; Jorge Soto-Andrade; Flavio Guíñez Abarzúa; Athel Cornish-Bowden; María Luz Cárdenas
Journal:  J Theor Biol       Date:  2005-08-24       Impact factor: 2.691

Review 3.  Biomolecular simulation: a computational microscope for molecular biology.

Authors:  Ron O Dror; Robert M Dirks; J P Grossman; Huafeng Xu; David E Shaw
Journal:  Annu Rev Biophys       Date:  2012       Impact factor: 12.981

4.  Impact of genome reduction on bacterial metabolism and its regulation.

Authors:  Eva Yus; Tobias Maier; Konstantinos Michalodimitrakis; Vera van Noort; Takuji Yamada; Wei-Hua Chen; Judith A H Wodke; Marc Güell; Sira Martínez; Ronan Bourgeois; Sebastian Kühner; Emanuele Raineri; Ivica Letunic; Olga V Kalinina; Michaela Rode; Richard Herrmann; Ricardo Gutiérrez-Gallego; Robert B Russell; Anne-Claude Gavin; Peer Bork; Luis Serrano
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

5.  Transcriptome complexity in a genome-reduced bacterium.

Authors:  Marc Güell; Vera van Noort; Eva Yus; Wei-Hua Chen; Justine Leigh-Bell; Konstantinos Michalodimitrakis; Takuji Yamada; Manimozhiyan Arumugam; Tobias Doerks; Sebastian Kühner; Michaela Rode; Mikita Suyama; Sabine Schmidt; Anne-Claude Gavin; Peer Bork; Luis Serrano
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

6.  Proteome organization in a genome-reduced bacterium.

Authors:  Sebastian Kühner; Vera van Noort; Matthew J Betts; Alejandra Leo-Macias; Claire Batisse; Michaela Rode; Takuji Yamada; Tobias Maier; Samuel Bader; Pedro Beltran-Alvarez; Daniel Castaño-Diez; Wei-Hua Chen; Damien Devos; Marc Güell; Tomas Norambuena; Ines Racke; Vladimir Rybin; Alexander Schmidt; Eva Yus; Ruedi Aebersold; Richard Herrmann; Bettina Böttcher; Achilleas S Frangakis; Robert B Russell; Luis Serrano; Peer Bork; Anne-Claude Gavin
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

7.  A whole-cell computational model predicts phenotype from genotype.

Authors:  Jonathan R Karr; Jayodita C Sanghvi; Derek N Macklin; Miriam V Gutschow; Jared M Jacobs; Benjamin Bolival; Nacyra Assad-Garcia; John I Glass; Markus W Covert
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

Review 8.  Circulation: overall regulation.

Authors:  A C Guyton; T G Coleman; H J Granger
Journal:  Annu Rev Physiol       Date:  1972       Impact factor: 19.318

9.  The Type 1 Diabetes PhysioLab Platform: a validated physiologically based mathematical model of pathogenesis in the non-obese diabetic mouse.

Authors:  L Shoda; H Kreuwel; K Gadkar; Y Zheng; C Whiting; M Atkinson; J Bluestone; D Mathis; D Young; S Ramanujan
Journal:  Clin Exp Immunol       Date:  2010-05-18       Impact factor: 4.330

10.  Some lessons about models from Michaelis and Menten.

Authors:  Jeremy Gunawardena
Journal:  Mol Biol Cell       Date:  2012-02       Impact factor: 4.138
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  4 in total

1.  Optimal control of gene expression for fast proteome adaptation to environmental change.

Authors:  Michael Y Pavlov; Måns Ehrenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

Review 2.  The future of whole-cell modeling.

Authors:  Derek N Macklin; Nicholas A Ruggero; Markus W Covert
Journal:  Curr Opin Biotechnol       Date:  2014-02-17       Impact factor: 9.740

Review 3.  A forecast for large-scale, predictive biology: Lessons from meteorology.

Authors:  Markus W Covert; Taryn E Gillies; Takamasa Kudo; Eran Agmon
Journal:  Cell Syst       Date:  2021-06-16       Impact factor: 11.091

4.  Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices.

Authors:  Gopal P Sarma; Victor Faundez
Journal:  Cell Logist       Date:  2017-11-29
  4 in total

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