Literature DB >> 22964631

Gene signature critical to cancer phenotype as a paradigm for anticancer drug discovery.

E R Sampson1, H R McMurray, D C Hassane, L Newman, P Salzman, C T Jordan, H Land.   

Abstract

Malignant cell transformation commonly results in the deregulation of thousands of cellular genes, an observation that suggests a complex biological process and an inherently challenging scenario for the development of effective cancer interventions. To better define the genes/pathways essential to regulating the malignant phenotype, we recently described a novel strategy based on the cooperative nature of carcinogenesis that focuses on genes synergistically deregulated in response to cooperating oncogenic mutations. These so-called 'cooperation response genes' (CRGs) are highly enriched for genes critical for the cancer phenotype, thereby suggesting their causal role in the malignant state. Here, we show that CRGs have an essential role in drug-mediated anticancer activity and that anticancer agents can be identified through their ability to antagonize the CRG expression profile. These findings provide proof-of-concept for the use of the CRG signature as a novel means of drug discovery with relevance to underlying anticancer drug mechanisms.

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Year:  2012        PMID: 22964631      PMCID: PMC3631583          DOI: 10.1038/onc.2012.389

Source DB:  PubMed          Journal:  Oncogene        ISSN: 0950-9232            Impact factor:   9.867


  60 in total

Review 1.  Translating the histone code.

Authors:  T Jenuwein; C D Allis
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

Review 2.  Functional consequences of histone modifications.

Authors:  Masayoshi Iizuka; M Mitchell Smith
Journal:  Curr Opin Genet Dev       Date:  2003-04       Impact factor: 5.578

3.  Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications.

Authors:  T Sørlie; C M Perou; R Tibshirani; T Aas; S Geisler; H Johnsen; T Hastie; M B Eisen; M van de Rijn; S S Jeffrey; T Thorsen; H Quist; J C Matese; P O Brown; D Botstein; P E Lønning; A L Børresen-Dale
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

4.  Valproic acid defines a novel class of HDAC inhibitors inducing differentiation of transformed cells.

Authors:  M Göttlicher; S Minucci; P Zhu; O H Krämer; A Schimpf; S Giavara; J P Sleeman; F Lo Coco; C Nervi; P G Pelicci; T Heinzel
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

5.  Multiclass cancer diagnosis using tumor gene expression signatures.

Authors:  S Ramaswamy; P Tamayo; R Rifkin; S Mukherjee; C H Yeang; M Angelo; C Ladd; M Reich; E Latulippe; J P Mesirov; T Poggio; W Gerald; M Loda; E S Lander; T R Golub
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

6.  Impact of prolonged infusions of the putative differentiating agent sodium phenylbutyrate on myelodysplastic syndromes and acute myeloid leukemia.

Authors:  Steven D Gore; Li-Jun Weng; William D Figg; Suoping Zhai; Ross C Donehower; George Dover; Michael R Grever; Constance Griffin; Louise B Grochow; Anita Hawkins; Kathleen Burks; Yelena Zabelena; Carole B Miller
Journal:  Clin Cancer Res       Date:  2002-04       Impact factor: 12.531

7.  Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses.

Authors:  A Bhattacharjee; W G Richards; J Staunton; C Li; S Monti; P Vasa; C Ladd; J Beheshti; R Bueno; M Gillette; M Loda; G Weber; E J Mark; E S Lander; W Wong; B E Johnson; T R Golub; D J Sugarbaker; M Meyerson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

8.  Phase I clinical trial of histone deacetylase inhibitor: suberoylanilide hydroxamic acid administered intravenously.

Authors:  Wm Kevin Kelly; Victoria M Richon; Owen O'Connor; Tracy Curley; Barbara MacGregor-Curtelli; William Tong; Mark Klang; Lawrence Schwartz; Stacie Richardson; Eddie Rosa; Marija Drobnjak; Carlos Cordon-Cordo; Judy H Chiao; Richard Rifkind; Paul A Marks; Howard Scher
Journal:  Clin Cancer Res       Date:  2003-09-01       Impact factor: 12.531

9.  Gene expression phenotypic models that predict the activity of oncogenic pathways.

Authors:  Erich Huang; Seiichi Ishida; Jennifer Pittman; Holly Dressman; Andrea Bild; Mark Kloos; Mark D'Amico; Richard G Pestell; Mike West; Joseph R Nevins
Journal:  Nat Genet       Date:  2003-06       Impact factor: 38.330

Review 10.  A phase I study of pivaloyloxymethyl butyrate, a prodrug of the differentiating agent butyric acid, in patients with advanced solid malignancies.

Authors:  Amita Patnaik; Eric K Rowinsky; Miguel A Villalona; Lisa A Hammond; Carolyn D Britten; Lillian L Siu; Andrew Goetz; Sally A Felton; Susan Burton; Frank H Valone; S Gail Eckhardt
Journal:  Clin Cancer Res       Date:  2002-07       Impact factor: 12.531

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  4 in total

Review 1.  Role of mesenchymal stem cells in cell life and their signaling.

Authors:  Shihori Tanabe
Journal:  World J Stem Cells       Date:  2014-01-26       Impact factor: 5.326

Review 2.  Tracking metastatic breast cancer: the future of biology in biosensors.

Authors:  Y C Lim; A P Wiegmans
Journal:  Med Oncol       Date:  2016-03-19       Impact factor: 3.064

3.  On non-detects in qPCR data.

Authors:  Matthew N McCall; Helene R McMurray; Hartmut Land; Anthony Almudevar
Journal:  Bioinformatics       Date:  2014-04-23       Impact factor: 6.937

4.  Multiple imputation and direct estimation for qPCR data with non-detects.

Authors:  Valeriia Sherina; Helene R McMurray; Winslow Powers; Harmut Land; Tanzy M T Love; Matthew N McCall
Journal:  BMC Bioinformatics       Date:  2020-11-26       Impact factor: 3.169

  4 in total

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