Literature DB >> 22964359

Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of Madhukar×Swarna RILs.

K Anuradha1, Surekha Agarwal, Y Venkateswara Rao, K V Rao, B C Viraktamath, N Sarla.   

Abstract

Identifying QTLs/genes for iron and zinc in rice grains can help in biofortification programs. 168 F(7) RILs derived from Madhukar×Swarna were used to map QTLs for iron and zinc concentrations in unpolished rice grains. Iron ranged from 0.2 to 224 ppm and zinc ranged from 0.4 to 104ppm. Genome wide mapping using 101 SSRs and 9 gene specific markers showed 5 QTLs on chromosomes 1, 3, 5, 7 and 12 significantly linked to iron, zinc or both. In all, 14 QTLs were identified for these two traits. QTLs for iron were co-located with QTLs for zinc on chromosomes 7 and 12. In all, ten candidate genes known for iron and zinc homeostasis underlie 12 of the 14 QTLs. Another 6 candidate genes were close to QTLs on chromosomes 3, 5 and 7. Thus the high priority candidate genes for high Fe and Zn in seeds are OsYSL1 and OsMTP1 for iron, OsARD2, OsIRT1, OsNAS1, OsNAS2 for zinc and OsNAS3, OsNRAMP1, Heavy metal ion transport and APRT for both iron and zinc together based on our genetic mapping studies as these genes strictly underlie QTLs. Several elite lines with high Fe, high Zn and both were identified.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22964359     DOI: 10.1016/j.gene.2012.07.054

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  35 in total

1.  Genomic marker assisted identification of genetic loci and genes associated with variation of grain zinc concentration in rice.

Authors:  Kumkum Kumari; Pankaj Kumar; Vinay K Sharma; Santosh K Singh
Journal:  J Genet       Date:  2019-12       Impact factor: 1.166

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Authors:  Partha Talukdar; Anthony J Travis; Mahmud Hossain; Md Rafiqul Islam; Gareth J Norton; Adam H Price
Journal:  Food Energy Secur       Date:  2021-09-30       Impact factor: 4.667

Review 3.  Genetic Approaches for Iron and Zinc Biofortification and Arsenic Decrease in Oryza sativa L. Grains.

Authors:  Vívian Ebeling Viana; Latóia Eduarda Maltzahn; Antonio Costa de Oliveira; Camila Pegoraro
Journal:  Biol Trace Elem Res       Date:  2021-11-13       Impact factor: 4.081

4.  Over-expression of the MxIRT1 gene increases iron and zinc content in rice seeds.

Authors:  Song Tan; Rui Han; Peng Li; Guang Yang; Shuang Li; Peng Zhang; Wei-Bing Wang; Wei-Zhong Zhao; Li-Ping Yin
Journal:  Transgenic Res       Date:  2014-08-07       Impact factor: 2.788

5.  Superior adaptation of aerobic rice under drought stress in Iran and validation test of linked SSR markers to major QTLs by MLM analysis across two years.

Authors:  Atefeh Sabouri; Reza Afshari; Tayebeh Raiesi; Haniyeh Babaei Raouf; Elham Nasiri; Masoud Esfahani; Ali Kafi Ghasemi; Arvind Kumar
Journal:  Mol Biol Rep       Date:  2018-07-16       Impact factor: 2.316

Review 6.  Genetic determinants of micronutrient traits in graminaceous crops to combat hidden hunger.

Authors:  P Sushree Shyamli; Sumi Rana; Sandhya Suranjika; Mehanathan Muthamilarasan; Ajay Parida; Manoj Prasad
Journal:  Theor Appl Genet       Date:  2021-06-06       Impact factor: 5.699

7.  Examining Two Sets of Introgression Lines in Rice (Oryza sativa L.) Reveals Favorable Alleles that Improve Grain Zn and Fe Concentrations.

Authors:  Qin Xu; Tian-Qing Zheng; Xia Hu; Li-Rui Cheng; Jian-Long Xu; Yu-Min Shi; Zhi-Kang Li
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

8.  Multi-Environment Quantitative Trait Loci Mapping for Grain Iron and Zinc Content Using Bi-parental Recombinant Inbred Line Mapping Population in Pearl Millet.

Authors:  Tripti Singhal; C Tara Satyavathi; S P Singh; Aruna Kumar; S Mukesh Sankar; C Bhardwaj; M Mallik; Jayant Bhat; N Anuradha; Nirupma Singh
Journal:  Front Plant Sci       Date:  2021-05-18       Impact factor: 5.753

9.  Roles of plant metal tolerance proteins (MTP) in metal storage and potential use in biofortification strategies.

Authors:  Felipe K Ricachenevsky; Paloma K Menguer; Raul A Sperotto; Lorraine E Williams; Janette P Fett
Journal:  Front Plant Sci       Date:  2013-05-14       Impact factor: 5.753

10.  Genome wide association mapping of grain arsenic, copper, molybdenum and zinc in rice (Oryza sativa L.) grown at four international field sites.

Authors:  Gareth J Norton; Alex Douglas; Brett Lahner; Elena Yakubova; Mary Lou Guerinot; Shannon R M Pinson; Lee Tarpley; Georgia C Eizenga; Steve P McGrath; Fang-Jie Zhao; M Rafiqul Islam; Shofiqul Islam; Guilan Duan; Yongguan Zhu; David E Salt; Andrew A Meharg; Adam H Price
Journal:  PLoS One       Date:  2014-02-25       Impact factor: 3.240

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