Literature DB >> 22961961

Genome-wide association study of intracranial aneurysms confirms role of Anril and SOX17 in disease risk.

Tatiana Foroud1, Daniel L Koller, Dongbing Lai, Laura Sauerbeck, Craig Anderson, Nerissa Ko, Ranjan Deka, Thomas H Mosley, Myriam Fornage, Daniel Woo, Charles J Moomaw, Richard Hornung, John Huston, Irene Meissner, Joan E Bailey-Wilson, Carl Langefeld, Guy Rouleau, E Sander Connolly, Bradford B Worrall, Dawn Kleindorfer, Matthew L Flaherty, Sharyl Martini, Jason Mackey, Felipe De Los Rios La Rosa, Robert D Brown, Joseph P Broderick.   

Abstract

BACKGROUND: Genomewide association studies have identified novel genetic factors that contribute to intracranial aneurysm (IA) susceptibility. We sought to confirm previously reported loci, to identify novel risk factors, and to evaluate the contribution of these factors to familial and sporadic IA.
METHOD: We utilized 2 complementary samples, one recruited on the basis of a dense family history of IA (discovery sample 1: 388 IA cases and 397 controls) and the other without regard to family history (discovery sample 2: 1095 IA cases and 1286 controls). Imputation was used to generate a common set of single nucleotide polymorphisms (SNP) across samples, and a logistic regression model was used to test for association in each sample. Results from each sample were then combined in a metaanalysis.
RESULTS: There was only modest overlap in the association results obtained in the 2 samples. In neither sample did results reach genomewide significance. However, the metaanalysis yielded genomewide significance for SNP on chromosome 9p (CDKN2BAS; rs6475606; P=3.6×10(-8)) and provided further evidence to support the previously reported association of IA with SNP in SOX17 on chromosome 8q (rs1072737; P=8.7×10(-5)). Analyses suggest that the effect of smoking acts multiplicatively with the SNP genotype, and smoking has a greater effect on risk than SNP genotype.
CONCLUSIONS: In addition to replicating several previously reported loci, we provide further evidence that the association on chromosome 9p is attributable to variants in CDKN2BAS (also known as ANRIL, an antisense noncoding RNA).

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Year:  2012        PMID: 22961961      PMCID: PMC3752852          DOI: 10.1161/STROKEAHA.112.656397

Source DB:  PubMed          Journal:  Stroke        ISSN: 0039-2499            Impact factor:   7.914


  24 in total

1.  Association between genetic variation on chromosome 9p21 and aneurysmal subarachnoid haemorrhage.

Authors:  Sandra Olsson; Ludvig Z Csajbok; Katarina Jood; Karin Nylén; Bengt Nellgård; Christina Jern
Journal:  J Neurol Neurosurg Psychiatry       Date:  2010-10-25       Impact factor: 10.154

2.  Artifact due to differential error when cases and controls are imputed from different platforms.

Authors:  Jennifer A Sinnott; Peter Kraft
Journal:  Hum Genet       Date:  2011-07-07       Impact factor: 4.132

3.  Hormonal factors and risk of aneurysmal subarachnoid hemorrhage: an international population-based, case-control study.

Authors:  C N Mhurchu; C Anderson; K Jamrozik; G Hankey; D Dunbabin
Journal:  Stroke       Date:  2001-03       Impact factor: 7.914

4.  Common variant near the endothelin receptor type A (EDNRA) gene is associated with intracranial aneurysm risk.

Authors:  Katsuhito Yasuno; Mehmet Bakırcıoğlu; Siew-Kee Low; Kaya Bilgüvar; Emília Gaál; Ynte M Ruigrok; Mika Niemelä; Akira Hata; Philippe Bijlenga; Hidetoshi Kasuya; Juha E Jääskeläinen; Dietmar Krex; Georg Auburger; Matthias Simon; Boris Krischek; Ali K Ozturk; Shrikant Mane; Gabriel J E Rinkel; Helmuth Steinmetz; Juha Hernesniemi; Karl Schaller; Hitoshi Zembutsu; Ituro Inoue; Aarno Palotie; François Cambien; Yusuke Nakamura; Richard P Lifton; Murat Günel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 11.205

5.  Association of an allele on chromosome 9 and abdominal aortic aneurysm.

Authors:  Erik Biros; Matthew Cooper; Lyle J Palmer; Philip J Walker; Paul E Norman; Jonathan Golledge
Journal:  Atherosclerosis       Date:  2010-06-15       Impact factor: 5.162

Review 6.  Genotype imputation.

Authors:  Yun Li; Cristen Willer; Serena Sanna; Gonçalo Abecasis
Journal:  Annu Rev Genomics Hum Genet       Date:  2009       Impact factor: 8.929

7.  Sequence variants on chromosome 9p21.3 confer risk for atherosclerotic stroke.

Authors:  Andreas Gschwendtner; Steve Bevan; John W Cole; Anna Plourde; Mar Matarin; Helen Ross-Adams; Thomas Meitinger; Erich Wichmann; Braxton D Mitchell; Karen Furie; Agnieszka Slowik; Stephen S Rich; Paul D Syme; Mary J MacLeod; James F Meschia; Jonathan Rosand; Steve J Kittner; Hugh S Markus; Bertram Müller-Myhsok; Martin Dichgans
Journal:  Ann Neurol       Date:  2009-05       Impact factor: 10.422

8.  Endothelial nitric oxide synthase polymorphism (-786T->C) and increased risk of angiographic vasospasm after aneurysmal subarachnoid hemorrhage.

Authors:  Nerissa U Ko; Pam Rajendran; Helen Kim; Martin Rutkowski; Ludmila Pawlikowska; Pui-Yan Kwok; Randall T Higashida; Michael T Lawton; Wade S Smith; Jonathan G Zaroff; William L Young
Journal:  Stroke       Date:  2008-02-28       Impact factor: 7.914

9.  Genome screen to detect linkage to intracranial aneurysm susceptibility genes: the Familial Intracranial Aneurysm (FIA) study.

Authors:  Tatiana Foroud; Laura Sauerbeck; Robert Brown; Craig Anderson; Daniel Woo; Dawn Kleindorfer; Matthew L Flaherty; Ranjan Deka; Richard Hornung; Irene Meissner; Joan E Bailey-Wilson; Guy Rouleau; E Sander Connolly; Dongbing Lai; Daniel L Koller; John Huston; Joseph P Broderick
Journal:  Stroke       Date:  2008-03-06       Impact factor: 7.914

10.  Genotype imputation with thousands of genomes.

Authors:  Bryan Howie; Jonathan Marchini; Matthew Stephens
Journal:  G3 (Bethesda)       Date:  2011-11-01       Impact factor: 3.154

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1.  Heart disease and stroke statistics--2014 update: a report from the American Heart Association.

Authors:  Alan S Go; Dariush Mozaffarian; Véronique L Roger; Emelia J Benjamin; Jarett D Berry; Michael J Blaha; Shifan Dai; Earl S Ford; Caroline S Fox; Sheila Franco; Heather J Fullerton; Cathleen Gillespie; Susan M Hailpern; John A Heit; Virginia J Howard; Mark D Huffman; Suzanne E Judd; Brett M Kissela; Steven J Kittner; Daniel T Lackland; Judith H Lichtman; Lynda D Lisabeth; Rachel H Mackey; David J Magid; Gregory M Marcus; Ariane Marelli; David B Matchar; Darren K McGuire; Emile R Mohler; Claudia S Moy; Michael E Mussolino; Robert W Neumar; Graham Nichol; Dilip K Pandey; Nina P Paynter; Matthew J Reeves; Paul D Sorlie; Joel Stein; Amytis Towfighi; Tanya N Turan; Salim S Virani; Nathan D Wong; Daniel Woo; Melanie B Turner
Journal:  Circulation       Date:  2013-12-18       Impact factor: 29.690

Review 2.  Genome-wide association studies in neurology.

Authors:  Meng-Shan Tan; Teng Jiang; Lan Tan; Jin-Tai Yu
Journal:  Ann Transl Med       Date:  2014-12

Review 3.  The emerging roles of long noncoding RNAs in common cardiovascular diseases.

Authors:  Xiaoying Jiang; Qilan Ning
Journal:  Hypertens Res       Date:  2015-03-12       Impact factor: 3.872

Review 4.  Heart Disease and Stroke Statistics-2017 Update: A Report From the American Heart Association.

Authors:  Emelia J Benjamin; Michael J Blaha; Stephanie E Chiuve; Mary Cushman; Sandeep R Das; Rajat Deo; Sarah D de Ferranti; James Floyd; Myriam Fornage; Cathleen Gillespie; Carmen R Isasi; Monik C Jiménez; Lori Chaffin Jordan; Suzanne E Judd; Daniel Lackland; Judith H Lichtman; Lynda Lisabeth; Simin Liu; Chris T Longenecker; Rachel H Mackey; Kunihiro Matsushita; Dariush Mozaffarian; Michael E Mussolino; Khurram Nasir; Robert W Neumar; Latha Palaniappan; Dilip K Pandey; Ravi R Thiagarajan; Mathew J Reeves; Matthew Ritchey; Carlos J Rodriguez; Gregory A Roth; Wayne D Rosamond; Comilla Sasson; Amytis Towfighi; Connie W Tsao; Melanie B Turner; Salim S Virani; Jenifer H Voeks; Joshua Z Willey; John T Wilkins; Jason Hy Wu; Heather M Alger; Sally S Wong; Paul Muntner
Journal:  Circulation       Date:  2017-01-25       Impact factor: 29.690

Review 5.  Cerebrovascular disorders associated with genetic lesions.

Authors:  Philipp Karschnia; Sayoko Nishimura; Angeliki Louvi
Journal:  Cell Mol Life Sci       Date:  2018-10-16       Impact factor: 9.261

6.  Genome-wide association study of intracranial aneurysm identifies a new association on chromosome 7.

Authors:  Tatiana Foroud; Dongbing Lai; Daniel Koller; Femke Van't Hof; Mitja I Kurki; Craig S Anderson; Robert D Brown; Edward Sander Connolly; Johan G Eriksson; Matthew Flaherty; Myriam Fornage; Mikael von Und Zu Fraunberg; Emília I Gaál; Aki Laakso; Juha Hernesniemi; John Huston; Juha E Jääskeläinen; Lambertus A Kiemeney; Riku Kivisaari; Dawn Kleindorfer; Nerissa Ko; Hanna Lehto; Jason Mackey; Irene Meissner; Charles J Moomaw; Thomas H Mosley; Marek Moskala; Mika Niemelä; Aarno Palotie; Joanna Pera; Gabriel Rinkel; Stephan Ripke; Guy Rouleau; Ynte Ruigrok; Laura Sauerbeck; Agnieszka Słowik; Sita H Vermeulen; Daniel Woo; Bradford B Worrall; Joseph Broderick
Journal:  Stroke       Date:  2014-09-25       Impact factor: 7.914

Review 7.  Long non-coding RNA ANRIL in gene regulation and its duality in atherosclerosis.

Authors:  Jie-Shan Chi; Jian-Zhou Li; Jing-Jing Jia; Ting Zhang; Xiao-Ma Liu; Li Yi
Journal:  J Huazhong Univ Sci Technolog Med Sci       Date:  2017-12-21

8.  RNF213 Is Associated with Intracranial Aneurysms in the French-Canadian Population.

Authors:  Sirui Zhou; Amirthagowri Ambalavanan; Daniel Rochefort; Pingxing Xie; Cynthia V Bourassa; Pascale Hince; Alexandre Dionne-Laporte; Dan Spiegelman; Ziv Gan-Or; Cathy Mirarchi; Vessela Zaharieva; Nicolas Dupré; Hatasu Kobayashi; Toshiaki Hitomi; Kouji Harada; Akio Koizumi; Lan Xiong; Patrick A Dion; Guy A Rouleau
Journal:  Am J Hum Genet       Date:  2016-10-13       Impact factor: 11.025

Review 9.  Advancing stroke genomic research in the age of Trans-Omics big data science: Emerging priorities and opportunities.

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Journal:  J Neurol Sci       Date:  2017-09-18       Impact factor: 3.181

10.  PCNT point mutations and familial intracranial aneurysms.

Authors:  Oswaldo Lorenzo-Betancor; Patrick R Blackburn; Emily Edwards; Rocío Vázquez-do-Campo; Eric W Klee; Catherine Labbé; Kyndall Hodges; Patrick Glover; Ashley N Sigafoos; Alexandra I Soto; Ronald L Walton; Stephen Doxsey; Michael B Bober; Sarah Jennings; Karl J Clark; Yan Asmann; David Miller; William D Freeman; James Meschia; Owen A Ross
Journal:  Neurology       Date:  2018-11-09       Impact factor: 9.910

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