Literature DB >> 22961737

Expanding the concepts and tools of metabolic engineering to elucidate cancer metabolism.

Mark A Keibler1, Sarah-Maria Fendt, Gregory Stephanopoulos.   

Abstract

The metabolic engineer's toolbox, comprising stable isotope tracers, flux estimation and analysis, pathway identification, and pathway kinetics and regulation, among other techniques, has long been used to elucidate and quantify pathways primarily in the context of engineering microbes for producing small molecules of interest. Recently, these tools are increasingly finding use in cancer biology due to their unparalleled capacity for quantifying intracellular metabolism of mammalian cells. Here, we review basic concepts that are used to derive useful insights about the metabolism of tumor cells, along with a number of illustrative examples highlighting the fundamental contributions of these methods to elucidating cancer cell metabolism. This area presents unique opportunities for metabolic engineering to expand its portfolio of applications into the realm of cancer biology and help develop new cancer therapies based on a new class of metabolically derived targets.
Copyright © 2012 American Institute of Chemical Engineers (AIChE).

Entities:  

Mesh:

Year:  2012        PMID: 22961737      PMCID: PMC3586222          DOI: 10.1002/btpr.1629

Source DB:  PubMed          Journal:  Biotechnol Prog        ISSN: 1520-6033


  94 in total

1.  Regulation of gene expression in flux balance models of metabolism.

Authors:  M W Covert; C H Schilling; B Palsson
Journal:  J Theor Biol       Date:  2001-11-07       Impact factor: 2.691

2.  On the origin of cancer cells.

Authors:  O WARBURG
Journal:  Science       Date:  1956-02-24       Impact factor: 47.728

3.  Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions.

Authors:  Maciek R Antoniewicz; Joanne K Kelleher; Gregory Stephanopoulos
Journal:  Metab Eng       Date:  2006-09-17       Impact factor: 9.783

4.  A mitochondria-K+ channel axis is suppressed in cancer and its normalization promotes apoptosis and inhibits cancer growth.

Authors:  Sébastien Bonnet; Stephen L Archer; Joan Allalunis-Turner; Alois Haromy; Christian Beaulieu; Richard Thompson; Christopher T Lee; Gary D Lopaschuk; Lakshmi Puttagunta; Sandra Bonnet; Gwyneth Harry; Kyoko Hashimoto; Christopher J Porter; Miguel A Andrade; Bernard Thebaud; Evangelos D Michelakis
Journal:  Cancer Cell       Date:  2007-01       Impact factor: 31.743

5.  Contributions of de novo synthesis of fatty acids to total VLDL-triglyceride secretion during prolonged hyperglycemia/hyperinsulinemia in normal man.

Authors:  A Aarsland; D Chinkes; R R Wolfe
Journal:  J Clin Invest       Date:  1996-11-01       Impact factor: 14.808

6.  Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis.

Authors:  Jason W Locasale; Alexandra R Grassian; Tamar Melman; Costas A Lyssiotis; Katherine R Mattaini; Adam J Bass; Gregory Heffron; Christian M Metallo; Taru Muranen; Hadar Sharfi; Atsuo T Sasaki; Dimitrios Anastasiou; Edouard Mullarky; Natalie I Vokes; Mika Sasaki; Rameen Beroukhim; Gregory Stephanopoulos; Azra H Ligon; Matthew Meyerson; Andrea L Richardson; Lynda Chin; Gerhard Wagner; John M Asara; Joan S Brugge; Lewis C Cantley; Matthew G Vander Heiden
Journal:  Nat Genet       Date:  2011-07-31       Impact factor: 38.330

7.  Effect of extracellular glutamine concentration on primary and secondary metabolism of a murine hybridoma: an in vivo 13C nuclear magnetic resonance study.

Authors:  A Mancuso; S T Sharfstein; E J Fernandez; D S Clark; H W Blanch
Journal:  Biotechnol Bioeng       Date:  1998-01-20       Impact factor: 4.530

Review 8.  In vivo stationary flux analysis by 13C labeling experiments.

Authors:  W Wiechert; A A de Graaf
Journal:  Adv Biochem Eng Biotechnol       Date:  1996       Impact factor: 2.635

9.  The metabolic profile of tumors depends on both the responsible genetic lesion and tissue type.

Authors:  Mariia O Yuneva; Teresa W M Fan; Thaddeus D Allen; Richard M Higashi; Dana V Ferraris; Takashi Tsukamoto; José M Matés; Francisco J Alonso; Chunmei Wang; Youngho Seo; Xin Chen; J Michael Bishop
Journal:  Cell Metab       Date:  2012-02-08       Impact factor: 27.287

Review 10.  Oxygen, a source of life and stress.

Authors:  M Christiane Brahimi-Horn; Jacques Pouysségur
Journal:  FEBS Lett       Date:  2007-06-19       Impact factor: 4.124

View more
  6 in total

1.  13C isotope-assisted methods for quantifying glutamine metabolism in cancer cells.

Authors:  Jie Zhang; Woo Suk Ahn; Paulo A Gameiro; Mark A Keibler; Zhe Zhang; Gregory Stephanopoulos
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Kinetic isotope effects significantly influence intracellular metabolite (13) C labeling patterns and flux determination.

Authors:  Thomas M Wasylenko; Gregory Stephanopoulos
Journal:  Biotechnol J       Date:  2013-08-05       Impact factor: 4.677

Review 3.  A roadmap for interpreting (13)C metabolite labeling patterns from cells.

Authors:  Joerg M Buescher; Maciek R Antoniewicz; Laszlo G Boros; Shawn C Burgess; Henri Brunengraber; Clary B Clish; Ralph J DeBerardinis; Olivier Feron; Christian Frezza; Bart Ghesquiere; Eyal Gottlieb; Karsten Hiller; Russell G Jones; Jurre J Kamphorst; Richard G Kibbey; Alec C Kimmelman; Jason W Locasale; Sophia Y Lunt; Oliver D K Maddocks; Craig Malloy; Christian M Metallo; Emmanuelle J Meuillet; Joshua Munger; Katharina Nöh; Joshua D Rabinowitz; Markus Ralser; Uwe Sauer; Gregory Stephanopoulos; Julie St-Pierre; Daniel A Tennant; Christoph Wittmann; Matthew G Vander Heiden; Alexei Vazquez; Karen Vousden; Jamey D Young; Nicola Zamboni; Sarah-Maria Fendt
Journal:  Curr Opin Biotechnol       Date:  2015-02-28       Impact factor: 9.740

4.  A Method to Constrain Genome-Scale Models with 13C Labeling Data.

Authors:  Héctor García Martín; Vinay Satish Kumar; Daniel Weaver; Amit Ghosh; Victor Chubukov; Aindrila Mukhopadhyay; Adam Arkin; Jay D Keasling
Journal:  PLoS Comput Biol       Date:  2015-09-17       Impact factor: 4.475

5.  Decoding the dynamics of cellular metabolism and the action of 3-bromopyruvate and 2-deoxyglucose using pulsed stable isotope-resolved metabolomics.

Authors:  Matthias Pietzke; Christin Zasada; Susann Mudrich; Stefan Kempa
Journal:  Cancer Metab       Date:  2014-06-30

6.  Inhibition of mitochondrial 2-oxoglutarate dehydrogenase impairs viability of cancer cells in a cell-specific metabolism-dependent manner.

Authors:  Victoria I Bunik; Garik Mkrtchyan; Aneta Grabarska; Henry Oppermann; Danilo Daloso; Wagner L Araujo; Malgorzata Juszczak; Wojciech Rzeski; Lucien Bettendorff; Alisdair R Fernie; Jürgen Meixensberger; Andrzej Stepulak; Frank Gaunitz
Journal:  Oncotarget       Date:  2016-05-03
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.