Literature DB >> 22955867

Identification of the parameters of the Beeler-Reuter ionic equation with a partially perturbed particle swarm optimization.

Fulong Chen1, Angdi Chu, Xuefei Yang, Yao Lei, Jizheng Chu.   

Abstract

A partially perturbed particle swarm optimization (PPSO) has been proposed for identifying the parameters of the Beeler-Reuter (BR) equation from action potential data. In the PPSO algorithm, the 63 BR equation parameters are divided into groups, and parameter patterns are made from the combination of the groups. PPSO enhances the capability of conventional particle swarm optimization (CPSO) by partially perturbing the coordinates of the globally best particle with the patterns when the searching process is locally confined. "Experimental data" were produced for cardiac myocytes simulated by the BR equation and the equation of Luo and Rudy (1991), and were used to test the algorithm of PPSO. The test results show that PPSO was able to identify the parameters of the BR equation effectively for different cardiac myocytes, while still retaining the conceptual simplicity and easy implementation of CPSO.

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Year:  2012        PMID: 22955867     DOI: 10.1109/TBME.2012.2216265

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  6 in total

Review 1.  Improving cardiomyocyte model fidelity and utility via dynamic electrophysiology protocols and optimization algorithms.

Authors:  Trine Krogh-Madsen; Eric A Sobie; David J Christini
Journal:  J Physiol       Date:  2016-02-04       Impact factor: 5.182

2.  Cell-specific cardiac electrophysiology models.

Authors:  Willemijn Groenendaal; Francis A Ortega; Armen R Kherlopian; Andrew C Zygmunt; Trine Krogh-Madsen; David J Christini
Journal:  PLoS Comput Biol       Date:  2015-04-30       Impact factor: 4.475

3.  Parameter Estimation of Ion Current Formulations Requires Hybrid Optimization Approach to Be Both Accurate and Reliable.

Authors:  Axel Loewe; Mathias Wilhelms; Jochen Schmid; Mathias J Krause; Fathima Fischer; Dierk Thomas; Eberhard P Scholz; Olaf Dössel; Gunnar Seemann
Journal:  Front Bioeng Biotechnol       Date:  2016-01-13

4.  Modelling variability in cardiac electrophysiology: a moment-matching approach.

Authors:  Eliott Tixier; Damiano Lombardi; Blanca Rodriguez; Jean-Frédéric Gerbeau
Journal:  J R Soc Interface       Date:  2017-08       Impact factor: 4.118

5.  A robust multi-objective optimization framework to capture both cellular and intercellular properties in cardiac cellular model tuning: Analyzing different regions of membrane resistance profile in parameter fitting.

Authors:  Elnaz Pouranbarani; Rodrigo Weber Dos Santos; Anders Nygren
Journal:  PLoS One       Date:  2019-11-15       Impact factor: 3.240

6.  Comparison of Detailed and Simplified Models of Human Atrial Myocytes to Recapitulate Patient Specific Properties.

Authors:  Daniel M Lombardo; Flavio H Fenton; Sanjiv M Narayan; Wouter-Jan Rappel
Journal:  PLoS Comput Biol       Date:  2016-08-05       Impact factor: 4.475

  6 in total

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