Literature DB >> 22951968

A transcriptomic hourglass in plant embryogenesis.

Marcel Quint1, Hajk-Georg Drost, Alexander Gabel, Kristian Karsten Ullrich, Markus Bönn, Ivo Grosse.   

Abstract

Animal and plant development starts with a constituting phase called embryogenesis, which evolved independently in both lineages. Comparative anatomy of vertebrate development--based on the Meckel-Serrès law and von Baer's laws of embryology from the early nineteenth century--shows that embryos from various taxa appear different in early stages, converge to a similar form during mid-embryogenesis, and again diverge in later stages. This morphogenetic series is known as the embryonic 'hourglass', and its bottleneck of high conservation in mid-embryogenesis is referred to as the phylotypic stage. Recent analyses in zebrafish and Drosophila embryos provided convincing molecular support for the hourglass model, because during the phylotypic stage the transcriptome was dominated by ancient genes and global gene expression profiles were reported to be most conserved. Although extensively explored in animals, an embryonic hourglass has not been reported in plants, which represent the second major kingdom in the tree of life that evolved embryogenesis. Here we provide phylotranscriptomic evidence for a molecular embryonic hourglass in Arabidopsis thaliana, using two complementary approaches. This is particularly significant because the possible absence of an hourglass based on morphological features in plants suggests that morphological and molecular patterns might be uncoupled. Together with the reported developmental hourglass patterns in animals, these findings indicate convergent evolution of the molecular hourglass and a conserved logic of embryogenesis across kingdoms.

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Year:  2012        PMID: 22951968     DOI: 10.1038/nature11394

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  26 in total

Review 1.  Early embryogenesis in flowering plants: setting up the basic body pattern.

Authors:  Steffen Lau; Daniel Slane; Ole Herud; Jixiang Kong; Gerd Jürgens
Journal:  Annu Rev Plant Biol       Date:  2012-01-03       Impact factor: 26.379

2.  Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors.

Authors:  Brandon H Le; Chen Cheng; Anhthu Q Bui; Javier A Wagmaister; Kelli F Henry; Julie Pelletier; Linda Kwong; Mark Belmonte; Ryan Kirkbride; Steve Horvath; Gary N Drews; Robert L Fischer; Jack K Okamuro; John J Harada; Robert B Goldberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-12       Impact factor: 11.205

3.  Gene expression divergence recapitulates the developmental hourglass model.

Authors:  Alex T Kalinka; Karolina M Varga; Dave T Gerrard; Stephan Preibisch; David L Corcoran; Julia Jarrells; Uwe Ohler; Casey M Bergman; Pavel Tomancak
Journal:  Nature       Date:  2010-12-09       Impact factor: 49.962

4.  A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages.

Authors:  Tomislav Domazet-Loso; Josip Brajković; Diethard Tautz
Journal:  Trends Genet       Date:  2007-11       Impact factor: 11.639

Review 5.  Arabidopsis embryogenesis.

Authors:  Soomin Park; John J Harada
Journal:  Methods Mol Biol       Date:  2008

6.  The zootype and the phylotypic stage.

Authors:  J M Slack; P W Holland; C F Graham
Journal:  Nature       Date:  1993-02-11       Impact factor: 49.962

7.  Genome evolution among cruciferous plants: a lecture from the comparison of the genetic maps of three diploid species--Capsella rubella, Arabidopsis lyrata subsp. petraea, and A. thaliana.

Authors:  Marcus A Koch; Markus Kiefer
Journal:  Am J Bot       Date:  2005-04       Impact factor: 3.844

8.  Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis.

Authors:  Dong-Ha Oh; Maheshi Dassanayake; Jeffrey S Haas; Anna Kropornika; Chris Wright; Matilde Paino d'Urzo; Hyewon Hong; Shahjahan Ali; Alvaro Hernandez; Georgina M Lambert; Gunsu Inan; David W Galbraith; Ray A Bressan; Dae-Jin Yun; Jian-Kang Zhu; John M Cheeseman; Hans J Bohnert
Journal:  Plant Physiol       Date:  2010-09-10       Impact factor: 8.340

Review 9.  Embryogenesis - the humble beginnings of plant life.

Authors:  Ive De Smet; Steffen Lau; Ulrike Mayer; Gerd Jürgens
Journal:  Plant J       Date:  2010-03       Impact factor: 6.417

10.  AmiGO: online access to ontology and annotation data.

Authors:  Seth Carbon; Amelia Ireland; Christopher J Mungall; ShengQiang Shu; Brad Marshall; Suzanna Lewis
Journal:  Bioinformatics       Date:  2008-11-25       Impact factor: 6.937

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  72 in total

1.  Gene expression atlas of embryo development in Arabidopsis.

Authors:  Peng Gao; Daoquan Xiang; Teagen D Quilichini; Prakash Venglat; Prashant K Pandey; Edwin Wang; C Stewart Gillmor; Raju Datla
Journal:  Plant Reprod       Date:  2019-02-14       Impact factor: 3.767

Review 2.  Does Early Embryogenesis in Eudicots and Monocots Involve the Same Mechanism and Molecular Players?

Authors:  Peng Zhao; Kevin Begcy; Thomas Dresselhaus; Meng-Xiang Sun
Journal:  Plant Physiol       Date:  2016-12-01       Impact factor: 8.340

Review 3.  Genomic perspectives of transcriptional regulation in forebrain development.

Authors:  Alex S Nord; Kartik Pattabiraman; Axel Visel; John L R Rubenstein
Journal:  Neuron       Date:  2015-01-07       Impact factor: 17.173

4.  Genome-Wide Dosage-Dependent and -Independent Regulation Contributes to Gene Expression and Evolutionary Novelty in Plant Polyploids.

Authors:  Xiaoli Shi; Changqing Zhang; Dae Kwan Ko; Z Jeffrey Chen
Journal:  Mol Biol Evol       Date:  2015-05-14       Impact factor: 16.240

5.  Embryonic bauplans and the developmental origins of facial diversity and constraint.

Authors:  Nathan M Young; Diane Hu; Alexis J Lainoff; Francis J Smith; Raul Diaz; Abigail S Tucker; Paul A Trainor; Richard A Schneider; Benedikt Hallgrímsson; Ralph S Marcucio
Journal:  Development       Date:  2014-03       Impact factor: 6.868

6.  Dissecting the Metabolic Role of Mitochondria during Developmental Leaf Senescence.

Authors:  Daria Chrobok; Simon R Law; Bastiaan Brouwer; Pernilla Lindén; Agnieszka Ziolkowska; Daniela Liebsch; Reena Narsai; Bozena Szal; Thomas Moritz; Nicolas Rouhier; James Whelan; Per Gardeström; Olivier Keech
Journal:  Plant Physiol       Date:  2016-10-15       Impact factor: 8.340

7.  Evolutionary transcriptomics of metazoan biphasic life cycle supports a single intercalation origin of metazoan larvae.

Authors:  Jing Wang; Lingling Zhang; Shanshan Lian; Zhenkui Qin; Xuan Zhu; Xiaoting Dai; Zekun Huang; Caihuan Ke; Zunchun Zhou; Jiankai Wei; Pingping Liu; Naina Hu; Qifan Zeng; Bo Dong; Ying Dong; Dexu Kong; Zhifeng Zhang; Sinuo Liu; Yu Xia; Yangping Li; Liang Zhao; Qiang Xing; Xiaoting Huang; Xiaoli Hu; Zhenmin Bao; Shi Wang
Journal:  Nat Ecol Evol       Date:  2020-03-16       Impact factor: 15.460

8.  Evolutionarily Conserved Alternative Splicing Across Monocots.

Authors:  Wenbin Mei; Lucas Boatwright; Guanqiao Feng; James C Schnable; W Brad Barbazuk
Journal:  Genetics       Date:  2017-08-24       Impact factor: 4.562

9.  Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.

Authors:  Zakhar Sergeevich Mustafin; Sergey Alexandrovich Lashin; Yury Georgievich Matushkin; Konstantin Vladimirovich Gunbin; Dmitry Arkadievich Afonnikov
Journal:  BMC Bioinformatics       Date:  2017-01-27       Impact factor: 3.169

10.  An explanatory evo-devo model for the developmental hourglass.

Authors:  Saamer Akhshabi; Shrutii Sarda; Constantine Dovrolis; Soojin Yi
Journal:  F1000Res       Date:  2014-07-08
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