Literature DB >> 22951599

High-throughput protein expression generator using a microfluidic platform.

Yair Glick1, Dorit Avrahami, Efrat Michaely, Doron Gerber.   

Abstract

Rapidly increasing fields, such as systems biology, require the development and implementation of new technologies, enabling high-throughput and high-fidelity measurements of large systems. Microfluidics promises to fulfill many of these requirements, such as performing high-throughput screening experiments on-chip, encompassing biochemical, biophysical, and cell-based assays. Since the early days of microfluidics devices, this field has drastically evolved, leading to the development of microfluidic large-scale integration. This technology allows for the integration of thousands of micromechanical valves on a single device with a postage-sized footprint (Figure 1). We have developed a high-throughput microfluidic platform for generating in vitro expression of protein arrays (Figure 2) named PING (Protein Interaction Network Generator). These arrays can serve as a template for many experiments such as protein-protein, protein-RNA or protein-DNA interactions. The device consist of thousands of reaction chambers, which are individually programmed using a microarrayer. Aligning of these printed microarrays to microfluidics devices programs each chamber with a single spot eliminating potential contamination or cross-reactivity. Moreover, generating microarrays using standard microarray spotting techniques is also very modular, allowing for the arraying of proteins, DNA, small molecules, and even colloidal suspensions. The potential impact of microfluidics on biological sciences is significant. A number of microfluidics based assays have already provided novel insights into the structure and function of biological systems, and the field of microfluidics will continue to impact biology.

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Substances:

Year:  2012        PMID: 22951599      PMCID: PMC3486751          DOI: 10.3791/3849

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  11 in total

1.  Monolithic microfabricated valves and pumps by multilayer soft lithography.

Authors:  M A Unger; H P Chou; T Thorsen; A Scherer; S R Quake
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

Review 2.  Integrated nanoliter systems.

Authors:  Jong Wook Hong; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

Review 3.  Solid supports for microarray immunoassays.

Authors:  Wlad Kusnezow; Jörg D Hoheisel
Journal:  J Mol Recognit       Date:  2003 Jul-Aug       Impact factor: 2.137

4.  A microfluidic processor for gene expression profiling of single human embryonic stem cells.

Authors:  Jiang F Zhong; Yan Chen; Joshua S Marcus; Axel Scherer; Stephen R Quake; Clive R Taylor; Leslie P Weiner
Journal:  Lab Chip       Date:  2007-11-02       Impact factor: 6.799

Review 5.  Integration column: Microfluidic high-throughput screening.

Authors:  Sebastian J Maerkl
Journal:  Integr Biol (Camb)       Date:  2008-12-09       Impact factor: 2.192

6.  Global analysis of protein activities using proteome chips.

Authors:  H Zhu; M Bilgin; R Bangham; D Hall; A Casamayor; P Bertone; N Lan; R Jansen; S Bidlingmaier; T Houfek; T Mitchell; P Miller; R A Dean; M Gerstein; M Snyder
Journal:  Science       Date:  2001-07-26       Impact factor: 47.728

7.  An in vitro microfluidic approach to generating protein-interaction networks.

Authors:  Doron Gerber; Sebastian J Maerkl; Stephen R Quake
Journal:  Nat Methods       Date:  2008-12-21       Impact factor: 28.547

8.  Topology of the membrane-associated hepatitis C virus protein NS4B.

Authors:  Marika Lundin; Magnus Monné; Anders Widell; Gunnar Von Heijne; Mats A A Persson
Journal:  J Virol       Date:  2003-05       Impact factor: 5.103

9.  Discovery of a hepatitis C target and its pharmacological inhibitors by microfluidic affinity analysis.

Authors:  Shirit Einav; Doron Gerber; Paul D Bryson; Ella H Sklan; Menashe Elazar; Sebastian J Maerkl; Jeffrey S Glenn; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2008-09       Impact factor: 54.908

10.  De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis.

Authors:  Polly M Fordyce; Doron Gerber; Danh Tran; Jiashun Zheng; Hao Li; Joseph L DeRisi; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2010-08-29       Impact factor: 54.908

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  11 in total

1.  Integrated Microfluidics for Protein Modification Discovery.

Authors:  Meirav Noach-Hirsh; Hadas Nevenzal; Yair Glick; Evelin Chorni; Dorit Avrahami; Efrat Barbiro-Michaely; Doron Gerber; Amit Tzur
Journal:  Mol Cell Proteomics       Date:  2015-08-14       Impact factor: 5.911

2.  An off-the-shelf integrated microfluidic device comprising self-assembled monolayers for protein array experiments.

Authors:  Mirit Hen; Maria Ronen; Alex Deitch; Efrat Barbiro-Michaely; Ziv Oren; Chaim N Sukenik; Doron Gerber
Journal:  Biomicrofluidics       Date:  2015-09-16       Impact factor: 2.800

3.  New host factors important for respiratory syncytial virus (RSV) replication revealed by a novel microfluidics screen for interactors of matrix (M) protein.

Authors:  Sarit Kipper; Samar Hamad; Leon Caly; Dorit Avrahami; Eran Bacharach; David A Jans; Doron Gerber; Monika Bajorek
Journal:  Mol Cell Proteomics       Date:  2015-01-02       Impact factor: 5.911

4.  Integrated microfluidic approach for quantitative high-throughput measurements of transcription factor binding affinities.

Authors:  Yair Glick; Yaron Orenstein; Dana Chen; Dorit Avrahami; Tsaffrir Zor; Ron Shamir; Doron Gerber
Journal:  Nucleic Acids Res       Date:  2015-12-03       Impact factor: 16.971

5.  Pathogen receptor discovery with a microfluidic human membrane protein array.

Authors:  Yair Glick; Ya'ara Ben-Ari; Nir Drayman; Michal Pellach; Gregory Neveu; Jim Boonyaratanakornkit; Dorit Avrahami; Shirit Einav; Ariella Oppenheim; Doron Gerber
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-04       Impact factor: 11.205

Review 6.  Engineering protocells: prospects for self-assembly and nanoscale production-lines.

Authors:  David M Miller; Jacqueline M Gulbis
Journal:  Life (Basel)       Date:  2015-03-25

7.  Exclusive Temporal Stimulation of IL-10 Expression in LPS-Stimulated Mouse Macrophages by cAMP Inducers and Type I Interferons.

Authors:  Orna Ernst; Yifat Glucksam-Galnoy; Bibek Bhatta; Muhammad Athamna; Iris Ben-Dror; Yair Glick; Doron Gerber; Tsaffrir Zor
Journal:  Front Immunol       Date:  2019-08-06       Impact factor: 7.561

8.  Drosophila TRF2 is a preferential core promoter regulator.

Authors:  Adi Kedmi; Yonathan Zehavi; Yair Glick; Yaron Orenstein; Diana Ideses; Chaim Wachtel; Tirza Doniger; Hiba Waldman Ben-Asher; Nemone Muster; James Thompson; Scott Anderson; Dorit Avrahami; John R Yates; Ron Shamir; Doron Gerber; Tamar Juven-Gershon
Journal:  Genes Dev       Date:  2014-09-15       Impact factor: 11.361

9.  Ice-binding proteins that accumulate on different ice crystal planes produce distinct thermal hysteresis dynamics.

Authors:  Ran Drori; Yeliz Celik; Peter L Davies; Ido Braslavsky
Journal:  J R Soc Interface       Date:  2014-09-06       Impact factor: 4.118

10.  SELMAP - SELEX affinity landscape MAPping of transcription factor binding sites using integrated microfluidics.

Authors:  Dana Chen; Yaron Orenstein; Rada Golodnitsky; Michal Pellach; Dorit Avrahami; Chaim Wachtel; Avital Ovadia-Shochat; Hila Shir-Shapira; Adi Kedmi; Tamar Juven-Gershon; Ron Shamir; Doron Gerber
Journal:  Sci Rep       Date:  2016-09-15       Impact factor: 4.379

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