Literature DB >> 22949189

Crystallization and preliminary crystal structure analysis of the ligand-binding domain of PqsR (MvfR), the Pseudomonas quinolone signal (PQS) responsive quorum-sensing transcription factor of Pseudomonas aeruginosa.

Ningna Xu1, Shen Yu, Sébastien Moniot, Michael Weyand, Wulf Blankenfeldt.   

Abstract

The opportunistic bacterial pathogen Pseudomonas aeruginosa employs three transcriptional regulators, LasR, RhlR and PqsR, to control the transcription of a large subset of its genes in a cell-density-dependent process known as quorum sensing. Here, the recombinant production, crystallization and structure solution of the ligand-binding domain of PqsR (MvfR), the LysR-type transcription factor that responds to the Pseudomonas quinolone signal (PQS), a quinolone-based quorum-sensing signal that is unique to P. aeruginosa and possibly a small number of other bacteria, is reported. PqsR regulates the expression of many virulence genes and may therefore be an interesting drug target. The ligand-binding domain (residues 91-319) was produced as a fusion with SUMO, and hexagonal-shaped crystals of purified PqsR_91-319 were obtained using the vapour-diffusion method. Crystallization in the presence of a PQS precursor allowed data collection to 3.25 Å resolution on a synchrotron beamline, and initial phases have been obtained using single-wavelength anomalous diffraction data from seleno-L-methionine-labelled crystals, revealing the space group to be P6(5)22, with unit-cell parameters a = b = 116-120, c = 115-117 Å.

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Year:  2012        PMID: 22949189      PMCID: PMC3433192          DOI: 10.1107/S1744309112032538

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  37 in total

1.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend.

Authors:  Shin Muraoka; Rumi Okumura; Naoto Ogawa; Takamasa Nonaka; Kiyotaka Miyashita; Toshiya Senda
Journal:  J Mol Biol       Date:  2003-05-02       Impact factor: 5.469

3.  Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals.

Authors:  Katherine A Kantardjieff; Bernhard Rupp
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

4.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

5.  Purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal fragment of the MvfR protein from Pseudomonas aeruginosa.

Authors:  Katerina Kefala; Dina Kotsifaki; Mary Providaki; Evangelia G Kapetaniou; Lawrence Rahme; Michael Kokkinidis
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-23

6.  Preparation of selenomethionyl proteins for phase determination.

Authors:  S Doublié
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Quinolone signaling in the cell-to-cell communication system of Pseudomonas aeruginosa.

Authors:  E C Pesci; J B Milbank; J P Pearson; S McKnight; A S Kende; E P Greenberg; B H Iglewski
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

8.  Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.

Authors:  Larry A Gallagher; Susan L McKnight; Marina S Kuznetsova; Everett C Pesci; Colin Manoil
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

9.  Production of selenomethionine-labelled proteins using simplified culture conditions and generally applicable host/vector systems.

Authors:  S A Guerrero; H J Hecht; B Hofmann; H Biebl; M Singh
Journal:  Appl Microbiol Biotechnol       Date:  2001-09       Impact factor: 4.813

10.  In vivo cloning of PCR products in E. coli.

Authors:  J D Oliner; K W Kinzler; B Vogelstein
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

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  3 in total

Review 1.  Chemical probes of quorum sensing: from compound development to biological discovery.

Authors:  Michael A Welsh; Helen E Blackwell
Journal:  FEMS Microbiol Rev       Date:  2016-06-05       Impact factor: 16.408

Review 2.  Development of quorum-based anti-virulence therapeutics targeting Gram-negative bacterial pathogens.

Authors:  Song Buck Tay; Wen Shan Yew
Journal:  Int J Mol Sci       Date:  2013-08-09       Impact factor: 5.923

3.  Structural basis for native agonist and synthetic inhibitor recognition by the Pseudomonas aeruginosa quorum sensing regulator PqsR (MvfR).

Authors:  Aravindan Ilangovan; Matthew Fletcher; Giordano Rampioni; Christian Pustelny; Kendra Rumbaugh; Stephan Heeb; Miguel Cámara; Alex Truman; Siri Ram Chhabra; Jonas Emsley; Paul Williams
Journal:  PLoS Pathog       Date:  2013-07-25       Impact factor: 6.823

  3 in total

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