Literature DB >> 22948915

High-resolution structure of Bombyx mori lipoprotein 7: crystallographic determination of the identity of the protein and its potential role in detoxification.

Agnieszka J Pietrzyk1, Santosh Panjikar, Anna Bujacz, Jochen Mueller-Dieckmann, Malgorzata Lochynska, Mariusz Jaskolski, Grzegorz Bujacz.   

Abstract

Three crystal structures of a lipoprotein (Bmlp7) of unknown function, a member of the 30 kDa lipoprotein family from mulberry silkworm (Bombyx mori L.) haemolymph, have been determined. The 1.33 Å resolution structure is an excellent example of how a precise crystallographic study can contribute to protein identification. The correct sequence of this haemolymph-isolated protein was assigned thanks to superb-quality electron-density maps. Two unexpected cadmium cations were found in this crystal structure [Bmlp7-I(Cd)] and their presence may be connected to a detoxification mechanism in this insect. For a comparison of the metal-binding sites, the crystal structure of a platinum complex (Bmlp7-Pt) was also solved at 1.94 Å resolution. The third (2.50 Å resolution) structure, of the native protein harvested in a different season (Bmlp7-II), corresponds to a different polymorph with an altered pattern of intermolecular interactions and with a total absence of cadmium ions and highlights the possible involvement of Bmlp7 in the response to environmental pollution. The N-terminal domain of Bmlp7 has a fold resembling a clockwise spiral created by six helices and can be classified as a VHS domain. The C-terminal domain is folded as a β-trefoil. The biological function of Bmlp7 is unknown, but its structural homology to sugar-binding proteins suggests that, in analogy to other 30 kDa haemolymph lipoproteins, it could play a role as an anti-apoptotic factor or function in the immune response of the insect to fungal infections.

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Year:  2012        PMID: 22948915     DOI: 10.1107/S0907444912021555

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  7 in total

1.  Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server.

Authors:  Heping Zheng; Mahendra D Chordia; David R Cooper; Maksymilian Chruszcz; Peter Müller; George M Sheldrick; Wladek Minor
Journal:  Nat Protoc       Date:  2013-12-19       Impact factor: 13.491

Review 2.  Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination.

Authors:  Alexander Wlodawer; Wladek Minor; Zbigniew Dauter; Mariusz Jaskolski
Journal:  FEBS J       Date:  2013-09-18       Impact factor: 5.542

3.  Crystal structure of Bombyx mori lipoprotein 6: comparative structural analysis of the 30-kDa lipoprotein family.

Authors:  Agnieszka J Pietrzyk; Anna Bujacz; Malgorzata Łochynska; Mariusz Jaskolski; Grzegorz Bujacz
Journal:  PLoS One       Date:  2014-11-07       Impact factor: 3.240

4.  Dimerization of 30Kc19 protein in the presence of amphiphilic moiety and importance of Cys-57 during cell penetration.

Authors:  Hee Ho Park; Youngsoo Sohn; Ji Woo Yeo; Ju Hyun Park; Hong Jai Lee; Jina Ryu; Won Jong Rhee; Tai Hyun Park
Journal:  Biotechnol J       Date:  2014-09-10       Impact factor: 4.677

Review 5.  Detect, correct, retract: How to manage incorrect structural models.

Authors:  Alexander Wlodawer; Zbigniew Dauter; Przemyslaw J Porebski; Wladek Minor; Robyn Stanfield; Mariusz Jaskolski; Edwin Pozharski; Christian X Weichenberger; Bernhard Rupp
Journal:  FEBS J       Date:  2017-11-27       Impact factor: 5.542

6.  Two crystal structures of Bombyx mori lipoprotein 3 - structural characterization of a new 30-kDa lipoprotein family member.

Authors:  Agnieszka J Pietrzyk; Anna Bujacz; Jochen Mueller-Dieckmann; Malgorzata Lochynska; Mariusz Jaskolski; Grzegorz Bujacz
Journal:  PLoS One       Date:  2013-04-16       Impact factor: 3.240

7.  Cysteine-Rich Atrial Secretory Protein from the Snail Achatina achatina: Purification and Structural Characterization.

Authors:  Sergey Shabelnikov; Artem Kiselev
Journal:  PLoS One       Date:  2015-10-07       Impact factor: 3.240

  7 in total

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