Literature DB >> 22947933

A mechanochemical model of actin filaments.

Osman N Yogurtcu1, Jin Seob Kim, Sean X Sun.   

Abstract

In eukaryotic cells, actin filaments are involved in important processes such as motility, division, cell shape regulation, contractility, and mechanosensation. Actin filaments are polymerized chains of monomers, which themselves undergo a range of chemical events such as ATP hydrolysis, polymerization, and depolymerization. When forces are applied to F-actin, in addition to filament mechanical deformations, the applied force must also influence chemical events in the filament. We develop an intermediate-scale model of actin filaments that combines actin chemistry with filament-level deformations. The model is able to compute mechanical responses of F-actin during bending and stretching. The model also describes the interplay between ATP hydrolysis and filament deformations, including possible force-induced chemical state changes of actin monomers in the filament. The model can also be used to model the action of several actin-associated proteins, and for large-scale simulation of F-actin networks. All together, our model shows that mechanics and chemistry must be considered together to understand cytoskeletal dynamics in living cells.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22947933      PMCID: PMC3443790          DOI: 10.1016/j.bpj.2012.07.020

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  60 in total

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5.  An integrative simulation model linking major biochemical reactions of actin-polymerization to structural properties of actin filaments.

Authors:  Aliaksandr A Halavatyi; Petr V Nazarov; Sandrine Medves; Marleen van Troys; Christophe Ampe; Mikalai Yatskou; Evelyne Friederich
Journal:  Biophys Chem       Date:  2008-11-27       Impact factor: 2.352

6.  Measurement of the persistence length of polymerized actin using fluorescence microscopy.

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Authors:  Colleen T Skau; David R Kovar
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8.  Effect of ATP on actin filament stiffness.

Authors:  P A Janmey; S Hvidt; G F Oster; J Lamb; T P Stossel; J H Hartwig
Journal:  Nature       Date:  1990-09-06       Impact factor: 49.962

9.  Structure and dynamics of the actin filament.

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10.  Force transmission in migrating cells.

Authors:  Maxime F Fournier; Roger Sauser; Davide Ambrosi; Jean-Jacques Meister; Alexander B Verkhovsky
Journal:  J Cell Biol       Date:  2010-01-25       Impact factor: 10.539

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  14 in total

Review 1.  Actin Mechanics and Fragmentation.

Authors:  Enrique M De La Cruz; Margaret L Gardel
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Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

Review 3.  Metabolic Regulation of Angiogenesis in Diabetes and Aging.

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Journal:  Physiology (Bethesda)       Date:  2017-07

4.  ROCK inhibition prevents early mouse embryo development.

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5.  Mechanical heterogeneity favors fragmentation of strained actin filaments.

Authors:  Enrique M De La Cruz; Jean-Louis Martiel; Laurent Blanchoin
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

6.  Plastic Deformation and Fragmentation of Strained Actin Filaments.

Authors:  Anthony C Schramm; Glen M Hocky; Gregory A Voth; Jean-Louis Martiel; Enrique M De La Cruz
Journal:  Biophys J       Date:  2019-06-25       Impact factor: 4.033

7.  Insights into Actin Polymerization and Nucleation Using a Coarse-Grained Model.

Authors:  Brandon G Horan; Aaron R Hall; Dimitrios Vavylonis
Journal:  Biophys J       Date:  2020-07-08       Impact factor: 4.033

8.  Insights into the Cooperative Nature of ATP Hydrolysis in Actin Filaments.

Authors:  Harshwardhan H Katkar; Aram Davtyan; Aleksander E P Durumeric; Glen M Hocky; Anthony C Schramm; Enrique M De La Cruz; Gregory A Voth
Journal:  Biophys J       Date:  2018-09-01       Impact factor: 4.033

9.  Bond Type and Discretization of Nonmuscle Myosin II Are Critical for Simulated Contractile Dynamics.

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Journal:  Biophys J       Date:  2020-04-21       Impact factor: 4.033

Review 10.  Mathematical modeling of eukaryotic cell migration: insights beyond experiments.

Authors:  Gaudenz Danuser; Jun Allard; Alex Mogilner
Journal:  Annu Rev Cell Dev Biol       Date:  2013-07-24       Impact factor: 13.827

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