Literature DB >> 22945596

Packaging the fly genome: domains and dynamics.

Rob White1.   

Abstract

Two independent genomic approaches have recently converged to provide insight into the domain organization of the Drosophila genome. Genome-wide mapping of chromosomal proteins and histone modifications has generated detailed maps of the Drosophila chromatin landscape and has led to the identification of a number of different chromatin states and their distribution in domains across the genome. A remarkably similar domain organization is derived from whole genome mapping of chromatin interactions that reveals the segmentation of the genome into structural domains. This review focuses on our current understanding of this domain architecture which provides a foundation for our understanding of the link between chromatin organization and the dynamic activity of the genome.

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Year:  2012        PMID: 22945596     DOI: 10.1093/bfgp/els020

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  9 in total

Review 1.  The embryo as a laboratory: quantifying transcription in Drosophila.

Authors:  Thomas Gregor; Hernan G Garcia; Shawn C Little
Journal:  Trends Genet       Date:  2014-07-06       Impact factor: 11.639

2.  Segmental folding of chromosomes: a basis for structural and regulatory chromosomal neighborhoods?

Authors:  Elphège P Nora; Job Dekker; Edith Heard
Journal:  Bioessays       Date:  2013-07-05       Impact factor: 4.345

Review 3.  Chromatin without the 30-nm fiber: constrained disorder instead of hierarchical folding.

Authors:  Sergey V Razin; Alexey A Gavrilov
Journal:  Epigenetics       Date:  2014-02-21       Impact factor: 4.528

4.  Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster.

Authors:  Matthew Slattery; Lijia Ma; Rebecca F Spokony; Robert K Arthur; Pouya Kheradpour; Anshul Kundaje; Nicolas Nègre; Alex Crofts; Ryan Ptashkin; Jennifer Zieba; Alexander Ostapenko; Sarah Suchy; Alec Victorsen; Nader Jameel; A Jason Grundstad; Wenxuan Gao; Jennifer R Moran; E Jay Rehm; Robert L Grossman; Manolis Kellis; Kevin P White
Journal:  Genome Res       Date:  2014-07       Impact factor: 9.043

5.  Chromatin Heterogeneity and Distribution of Regulatory Elements in the Late-Replicating Intercalary Heterochromatin Domains of Drosophila melanogaster Chromosomes.

Authors:  Varvara A Khoroshko; Viktor G Levitsky; Tatyana Yu Zykova; Oksana V Antonenko; Elena S Belyaeva; Igor F Zhimulev
Journal:  PLoS One       Date:  2016-06-14       Impact factor: 3.240

6.  Similarity in replication timing between polytene and diploid cells is associated with the organization of the Drosophila genome.

Authors:  Tatyana D Kolesnikova; Fedor P Goncharov; Igor F Zhimulev
Journal:  PLoS One       Date:  2018-04-16       Impact factor: 3.240

7.  Genetic organization of interphase chromosome bands and interbands in Drosophila melanogaster.

Authors:  Igor F Zhimulev; Tatyana Yu Zykova; Fyodor P Goncharov; Varvara A Khoroshko; Olga V Demakova; Valeriy F Semeshin; Galina V Pokholkova; Lidiya V Boldyreva; Darya S Demidova; Vladimir N Babenko; Sergey A Demakov; Elena S Belyaeva
Journal:  PLoS One       Date:  2014-07-29       Impact factor: 3.240

8.  Tethering of CHROMATOR and dCTCF proteins results in decompaction of condensed bands in the Drosophila melanogaster polytene chromosomes but does not affect their transcription and replication timing.

Authors:  Galina V Pokholkova; Sergei A Demakov; Oleg V Andreenkov; Natalia G Andreenkova; Elena I Volkova; Elena S Belyaeva; Igor F Zhimulev
Journal:  PLoS One       Date:  2018-04-02       Impact factor: 3.240

Review 9.  Polytene Chromosomes - A Portrait of Functional Organization of the Drosophila Genome.

Authors:  Tatyana Yu Zykova; Victor G Levitsky; Elena S Belyaeva; Igor F Zhimulev
Journal:  Curr Genomics       Date:  2018-04       Impact factor: 2.236

  9 in total

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