Literature DB >> 22939401

Resequencing analysis of the candidate tyrosine kinase and RAS pathway gene families in multiple myeloma.

Vishwanathan Hucthagowder1, Rekha Meyer, Chelsea Mullins, Rakesh Nagarajan, John F DiPersio, Ravi Vij, Michael H Tomasson, Shashikant Kulkarni.   

Abstract

Multiple myeloma (MM) is an incurable, B-cell malignancy characterized by the clonal proliferation and accumulation of malignant plasma cells in bone marrow. Despite recent advances in the understanding of genomic aberrations, a comprehensive catalogue of clinically actionable mutations in MM is just beginning to emerge. The tyrosine kinase (TK) and RAS oncogenes, which encode important regulators of various signaling pathways, are among the most frequently altered gene families in cancer. To clarify the role of TK and RAS genes in the pathogenesis of MM, we performed a systematic, targeted screening of mutations on prioritized RAS and TK genes, in CD138-sorted bone marrow specimens from 42 untreated patients. We identified a total of 24 mutations in the KRAS, PIK3CA, INSR, LTK, and MERTK genes. In particular, seven novel mutations in addition to known KRAS mutations were observed. Prediction analysis tools PolyPhen and Sorting Intolerant from Tolerant (SIFT) were used to assess the functional significance of these novel mutations. Our analysis predicted that these mutations may have a deleterious effect, resulting in the functional alteration of proteins involved in the pathogenesis of myeloma. While further investigation is needed to determine the functional consequences of these proteins, mutational testing of the RAS and TK genes in larger myeloma cohorts might also be useful to establish the recurrent nature of these mutations.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22939401      PMCID: PMC3442604          DOI: 10.1016/j.cancergen.2012.06.007

Source DB:  PubMed          Journal:  Cancer Genet


  21 in total

1.  RAS mutations are uncommon in multiple myeloma and other monoclonal gammopathies.

Authors:  Paloma Martín; Almudena Santón; Mónica García-Cosío; Carmen Bellas
Journal:  Int J Oncol       Date:  2005-10       Impact factor: 5.650

2.  A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer.

Authors:  Philip Stephens; Sarah Edkins; Helen Davies; Chris Greenman; Charles Cox; Chris Hunter; Graham Bignell; Jon Teague; Raffaella Smith; Claire Stevens; Sarah O'Meara; Adrian Parker; Patrick Tarpey; Tim Avis; Andy Barthorpe; Lisa Brackenbury; Gemma Buck; Adam Butler; Jody Clements; Jennifer Cole; Ed Dicks; Ken Edwards; Simon Forbes; Matthew Gorton; Kristian Gray; Kelly Halliday; Rachel Harrison; Katy Hills; Jonathon Hinton; David Jones; Vivienne Kosmidou; Ross Laman; Richard Lugg; Andrew Menzies; Janet Perry; Robert Petty; Keiran Raine; Rebecca Shepherd; Alexandra Small; Helen Solomon; Yvonne Stephens; Calli Tofts; Jennifer Varian; Anthony Webb; Sofie West; Sara Widaa; Andrew Yates; Francis Brasseur; Colin S Cooper; Adrienne M Flanagan; Anthony Green; Maggie Knowles; Suet Y Leung; Leendert H J Looijenga; Bruce Malkowicz; Marco A Pierotti; Bin Teh; Siu T Yuen; Andrew G Nicholson; Sunil Lakhani; Douglas F Easton; Barbara L Weber; Michael R Stratton; P Andrew Futreal; Richard Wooster
Journal:  Nat Genet       Date:  2005-05-22       Impact factor: 38.330

3.  High incidence of N and K-Ras activating mutations in multiple myeloma and primary plasma cell leukemia at diagnosis.

Authors:  S Bezieau; M C Devilder; H Avet-Loiseau; M P Mellerin; D Puthier; E Pennarun; M J Rapp; J L Harousseau; J P Moisan; R Bataille
Journal:  Hum Mutat       Date:  2001-09       Impact factor: 4.878

4.  Detection of N-Ras codon 61 mutations in subpopulations of tumor cells in multiple myeloma at presentation.

Authors:  N Kalakonda; D G Rothwell; J H Scarffe; J D Norton
Journal:  Blood       Date:  2001-09-01       Impact factor: 22.113

5.  Mutation, SNP, and isoform analysis of fibroblast growth factor receptor 3 (FGFR3) in 150 newly diagnosed multiple myeloma patients.

Authors:  Obiageli N Onwuazor; Xiao-Yan Wen; Ding-Yan Wang; Lihua Zhuang; Esther Masih-Khan; Jaimie Claudio; Bart Barlogie; John D Shaughnessy; A Keith Stewart
Journal:  Blood       Date:  2003-07-15       Impact factor: 22.113

6.  Activating mutations of N- and K-ras in multiple myeloma show different clinical associations: analysis of the Eastern Cooperative Oncology Group Phase III Trial.

Authors:  P Liu; T Leong; L Quam; D Billadeau; N E Kay; P Greipp; R A Kyle; M M Oken; B Van Ness
Journal:  Blood       Date:  1996-10-01       Impact factor: 22.113

Review 7.  A census of human cancer genes.

Authors:  P Andrew Futreal; Lachlan Coin; Mhairi Marshall; Thomas Down; Timothy Hubbard; Richard Wooster; Nazneen Rahman; Michael R Stratton
Journal:  Nat Rev Cancer       Date:  2004-03       Impact factor: 60.716

8.  A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes.

Authors:  Timothy J Ley; Patrick J Minx; Matthew J Walter; Rhonda E Ries; Hui Sun; Michael McLellan; John F DiPersio; Daniel C Link; Michael H Tomasson; Timothy A Graubert; Howard McLeod; Hanna Khoury; Mark Watson; William Shannon; Kathryn Trinkaus; Sharon Heath; James W Vardiman; Michael A Caligiuri; Clara D Bloomfield; Jeffrey D Milbrandt; Elaine R Mardis; Richard K Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-12       Impact factor: 11.205

9.  The role of the Wnt-signaling antagonist DKK1 in the development of osteolytic lesions in multiple myeloma.

Authors:  Erming Tian; Fenghuang Zhan; Ronald Walker; Erik Rasmussen; Yupo Ma; Bart Barlogie; John D Shaughnessy
Journal:  N Engl J Med       Date:  2003-12-25       Impact factor: 91.245

Review 10.  Mutation of the PIK3CA oncogene in human cancers.

Authors:  B Karakas; K E Bachman; B H Park
Journal:  Br J Cancer       Date:  2006-02-27       Impact factor: 7.640

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  12 in total

1.  The impact of prior malignancies on second malignancies and survival in MM patients: a population-based study.

Authors:  Gudbjörg Jonsdottir; Sigrún H Lund; Magnus Björkholm; Ingemar Turesson; Malin Hultcrantz; Anna Porwit; Yogesh S Jethava; Ola Landgren; Sigurdur Y Kristinsson
Journal:  Blood Adv       Date:  2017-11-22

Review 2.  Staging and prognostication of multiple myeloma.

Authors:  Rafael Fonseca; Jorge Monge; Meletios A Dimopoulos
Journal:  Expert Rev Hematol       Date:  2014-02       Impact factor: 2.929

3.  Single-Cell Profiling Reveals Metabolic Reprogramming as a Resistance Mechanism in BRAF-Mutated Multiple Myeloma.

Authors:  Birgit Knoechel; Jens G Lohr; Johannes M Waldschmidt; Jake A Kloeber; Praveen Anand; Julia Frede; Antonis Kokkalis; Valeriya Dimitrova; Sayalee Potdar; Monica S Nair; Tushara Vijaykumar; Nam Gyu Im; Amy Guillaumet-Adkins; Nitish Chopra; Hannah Stuart; Lillian Budano; Noori Sotudeh; Guangwu Guo; Clemens Grassberger; Andrew J Yee; Jacob P Laubach; Paul G Richardson; Kenneth C Anderson; Noopur S Raje
Journal:  Clin Cancer Res       Date:  2021-09-13       Impact factor: 13.801

4.  Targeted RNAseq Improves Clinical Diagnosis of Very Early-Onset Pediatric Immune Dysregulation.

Authors:  Kiera Berger; Dalia Arafat; Shanmuganathan Chandrakasan; Scott B Snapper; Greg Gibson
Journal:  J Pers Med       Date:  2022-06-01

5.  MERTK controls melanoma cell migration and survival and differentially regulates cell behavior relative to AXL.

Authors:  Kathryn A Tworkoski; James T Platt; Antonella Bacchiocchi; Marcus Bosenberg; Titus J Boggon; David F Stern
Journal:  Pigment Cell Melanoma Res       Date:  2013-05-21       Impact factor: 4.693

6.  Circulating tumour-derived DNA in metastatic soft tissue sarcoma.

Authors:  Nicholas C Eastley; Barbara Ottolini; Rita Neumann; Jin-Li Luo; Robert K Hastings; Imran Khan; David A Moore; Claire P Esler; Jacqueline A Shaw; Nicola J Royle; Robert U Ashford
Journal:  Oncotarget       Date:  2018-01-19

7.  Germinal center B-cells resist transformation by Kras independently of tumor suppressor Arf.

Authors:  Chelsea D Mullins; Mack Y Su; Vishwanathan Hucthagowder; Liang Chu; Lan Lu; Shashikant Kulkarni; Deborah Novack; Ravi Vij; Michael H Tomasson
Journal:  PLoS One       Date:  2013-06-25       Impact factor: 3.240

Review 8.  Key Roles of AXL and MER Receptor Tyrosine Kinases in Resistance to Multiple Anticancer Therapies.

Authors:  Marie Schoumacher; Mike Burbridge
Journal:  Curr Oncol Rep       Date:  2017-03       Impact factor: 5.075

9.  One reporter for in-cell activity profiling of majority of protein kinase oncogenes.

Authors:  Iva Gudernova; Silvie Foldynova-Trantirkova; Barbora El Ghannamova; Bohumil Fafilek; Miroslav Varecha; Lukas Balek; Eva Hruba; Lucie Jonatova; Iva Jelinkova; Michaela Kunova Bosakova; Lukas Trantirek; Jiri Mayer; Pavel Krejci
Journal:  Elife       Date:  2017-02-15       Impact factor: 8.140

10.  Gene integrated set profile analysis: a context-based approach for inferring biological endpoints.

Authors:  Jeanne Kowalski; Bhakti Dwivedi; Scott Newman; Jeffery M Switchenko; Rini Pauly; David A Gutman; Jyoti Arora; Khanjan Gandhi; Kylie Ainslie; Gregory Doho; Zhaohui Qin; Carlos S Moreno; Michael R Rossi; Paula M Vertino; Sagar Lonial; Leon Bernal-Mizrachi; Lawrence H Boise
Journal:  Nucleic Acids Res       Date:  2016-01-29       Impact factor: 16.971

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