Literature DB >> 22938265

Influence of non-universal effects on dynamical scaling in driven polymer translocation.

T Ikonen1, A Bhattacharya, T Ala-Nissila, W Sung.   

Abstract

We study the dynamics of driven polymer translocation using both molecular dynamics (MD) simulations and a theoretical model based on the non-equilibrium tension propagation on the cis side subchain. We present theoretical and numerical evidence that the non-universal behavior observed in experiments and simulations are due to finite chain length effects that persist well beyond the relevant experimental and simulation regimes. In particular, we consider the influence of the pore-polymer interactions and show that they give a major contribution to the non-universal effects. In addition, we present comparisons between the theory and MD simulations for several quantities, showing extremely good agreement in the relevant parameter regimes. Finally, we discuss the potential limitations of the present theories.

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Year:  2012        PMID: 22938265     DOI: 10.1063/1.4742188

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  7 in total

1.  Discriminating protein tags on a dsDNA construct using a Dual Nanopore Device.

Authors:  Swarnadeep Seth; Arthur Rand; Walter Reisner; William B Dunbar; Robert Sladek; Aniket Bhattacharya
Journal:  Sci Rep       Date:  2022-07-04       Impact factor: 4.996

2.  Role of non-equilibrium conformations on driven polymer translocation.

Authors:  H H Katkar; M Muthukumar
Journal:  J Chem Phys       Date:  2018-01-14       Impact factor: 3.488

3.  DNA barcodes using a double nanopore system.

Authors:  Swarnadeep Seth; Aniket Bhattacharya
Journal:  Sci Rep       Date:  2021-05-07       Impact factor: 4.379

4.  Driven translocation of a semi-flexible polymer through a nanopore.

Authors:  Jalal Sarabadani; Timo Ikonen; Harri Mökkönen; Tapio Ala-Nissila; Spencer Carson; Meni Wanunu
Journal:  Sci Rep       Date:  2017-08-07       Impact factor: 4.379

5.  Active translocation of a semiflexible polymer assisted by an ATP-based molecular motor.

Authors:  A Fiasconaro; J J Mazo; F Falo
Journal:  Sci Rep       Date:  2017-06-23       Impact factor: 4.379

6.  Osmotically Driven and Detected DNA Translocations.

Authors:  Angus McMullen; George Araujo; Michele Winter; Derek Stein
Journal:  Sci Rep       Date:  2019-10-21       Impact factor: 4.379

7.  DNA barcode by flossing through a cylindrical nanopore.

Authors:  Swarnadeep Seth; Aniket Bhattacharya
Journal:  RSC Adv       Date:  2021-06-10       Impact factor: 4.036

  7 in total

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