Literature DB >> 22938217

Single-molecule stochastic times in a reversible bimolecular reaction.

Peter Keller1, Angelo Valleriani.   

Abstract

In this work, we consider the reversible reaction between reactants of species A and B to form the product C. We consider this reaction as a prototype of many pseudobiomolecular reactions in biology, such as for instance molecular motors. We derive the exact probability density for the stochastic waiting time that a molecule of species A needs until the reaction with a molecule of species B takes place. We perform this computation taking fully into account the stochastic fluctuations in the number of molecules of species B. We show that at low numbers of participating molecules, the exact probability density differs from the exponential density derived by assuming the law of mass action. Finally, we discuss the condition of detailed balance in the exact stochastic and in the approximate treatment.

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Year:  2012        PMID: 22938217     DOI: 10.1063/1.4747337

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Unveiling the hidden structure of complex stochastic biochemical networks.

Authors:  Angelo Valleriani; Xin Li; Anatoly B Kolomeisky
Journal:  J Chem Phys       Date:  2014-02-14       Impact factor: 3.488

2.  Pathway structure determination in complex stochastic networks with non-exponential dwell times.

Authors:  Xin Li; Anatoly B Kolomeisky; Angelo Valleriani
Journal:  J Chem Phys       Date:  2014-05-14       Impact factor: 3.488

3.  Single-molecule modeling of mRNA degradation by miRNA: Lessons from data.

Authors:  Celine Sin; Davide Chiarugi; Angelo Valleriani
Journal:  BMC Syst Biol       Date:  2015-06-01

4.  Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA.

Authors:  Carlus Deneke; Reinhard Lipowsky; Angelo Valleriani
Journal:  PLoS One       Date:  2013-02-11       Impact factor: 3.240

  4 in total

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