| Literature DB >> 22937026 |
Supriya Jasuja1, Nicola D Thompson, Philip J Peters, Yury E Khudyakov, Megan T Patel, Purisima Linchangco, Hong T Thai, William M Switzer, Anupama Shankar, Walid Heneine, Dale J Hu, Anne C Moorman, Susan I Gerber.
Abstract
BACKGROUND: A high prevalence of hepatitis B virus (HBV) and human immunodeficiency virus (HIV) infections have been reported among persons with severe mental illness. In October, 2009, the Cook County Department of Public Health (CCDPH) initiated an investigation following notification of a cluster of HBV infections among mentally ill residents at a long term care facility (LTCF).Entities:
Mesh:
Year: 2012 PMID: 22937026 PMCID: PMC3425569 DOI: 10.1371/journal.pone.0043252
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Phylogenetic relationship of the complete HBV genomic sequences of 4 long term care facility (LTCF) A residents with newly diagnosed HBV infection and representative HBV genotype A (n = 29) and D (n = 6) strains.
Representative HBV genotype A and D strains were retrieved from GenBank and CDC's sequence database. The 4 LTCF A residents are shown by the solid boxes.
Figure 2Phylogenetic relationship of the HIV sequences of 6 LTCF A residents with HIV infection (4 newly diagnosed), 23 reference US subtype B sequences, and one reference subtype C sequence (the outgroup).
The 6 LTCF A residents are shown by the solid boxes. The tree was derived from a nucleotide alignment of the 1497-bp pro-pol region. Trees were inferred from 3 different phylogenetic analysis methods (neighbor-joining, maximum likelihood, and Bayesian inference) which independently showed that 2 sequences (COB 2 and COB 3) consistently cluster together with high bootstrap/statistical support (99/100/1.0 respectively). These two sequences show a pairwise nucleotide identity of 99.3%.