Literature DB >> 22935211

Network medicine approaches to the genetics of complex diseases.

Edwin K Silverman1, Joseph Loscalzo.   

Abstract

Complex diseases are caused by perturbations of biological networks. Genetic analysis approaches focused on individual genetic determinants are unlikely to characterize the network architecture of complex diseases comprehensively. Network medicine, which applies systems biology and network science to complex molecular networks underlying human disease, focuses on identifying the interacting genes and proteins which lead to disease pathogenesis. The long biological path between a genetic risk variant and development of a complex disease involves a range of biochemical intermediates, including coding and non-coding RNA, proteins, and metabolites. Transcriptomics, proteomics, metabolomics, and other -omics technologies have the potential to provide insights into complex disease pathogenesis, especially if they are applied within a network biology framework. Most previous efforts to relate genetics to -omics data have focused on a single -omics platform; the next generation of complex disease genetics studies will require integration of multiple types of -omics data sets in a network context. Network medicine may also provide insight into complex disease heterogeneity, serve as the basis for new disease classifications that reflect underlying disease pathogenesis, and guide rational therapeutic and preventive strategies.

Entities:  

Mesh:

Year:  2012        PMID: 22935211      PMCID: PMC3545396     

Source DB:  PubMed          Journal:  Discov Med        ISSN: 1539-6509            Impact factor:   2.970


  40 in total

1.  The mystery of missing heritability: Genetic interactions create phantom heritability.

Authors:  Or Zuk; Eliana Hechter; Shamil R Sunyaev; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-05       Impact factor: 11.205

2.  Predicting mutation outcome from early stochastic variation in genetic interaction partners.

Authors:  Alejandro Burga; M Olivia Casanueva; Ben Lehner
Journal:  Nature       Date:  2011-12-07       Impact factor: 49.962

3.  MicroRNA-21 integrates pathogenic signaling to control pulmonary hypertension: results of a network bioinformatics approach.

Authors:  Victoria N Parikh; Richard C Jin; Sabrina Rabello; Natali Gulbahce; Kevin White; Andrew Hale; Katherine A Cottrill; Rahamthulla S Shaik; Aaron B Waxman; Ying-Yi Zhang; Bradley A Maron; Jochen C Hartner; Yuko Fujiwara; Stuart H Orkin; Kathleen J Haley; Albert-László Barabási; Joseph Loscalzo; Stephen Y Chan
Journal:  Circulation       Date:  2012-02-27       Impact factor: 29.690

4.  Genetics. Systems genetics.

Authors:  Joseph H Nadeau; Aimée M Dudley
Journal:  Science       Date:  2011-02-25       Impact factor: 47.728

5.  Common SNPs explain a large proportion of the heritability for human height.

Authors:  Jian Yang; Beben Benyamin; Brian P McEvoy; Scott Gordon; Anjali K Henders; Dale R Nyholt; Pamela A Madden; Andrew C Heath; Nicholas G Martin; Grant W Montgomery; Michael E Goddard; Peter M Visscher
Journal:  Nat Genet       Date:  2010-06-20       Impact factor: 38.330

6.  A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.

Authors:  Janghoo Lim; Tong Hao; Chad Shaw; Akash J Patel; Gábor Szabó; Jean-François Rual; C Joseph Fisk; Ning Li; Alex Smolyar; David E Hill; Albert-László Barabási; Marc Vidal; Huda Y Zoghbi
Journal:  Cell       Date:  2006-05-19       Impact factor: 41.582

7.  Highly interconnected genes in disease-specific networks are enriched for disease-associated polymorphisms.

Authors:  Fredrik Barrenäs; Sreenivas Chavali; Alexessander Couto Alves; Lachlan Coin; Marjo-Riitta Jarvelin; Rebecka Jörnsten; Michael A Langston; Adaikalavan Ramasamy; Gary Rogers; Hui Wang; Mikael Benson
Journal:  Genome Biol       Date:  2012-06-15       Impact factor: 13.583

8.  Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke.

Authors:  Céline Bellenguez; Steve Bevan; Andreas Gschwendtner; Chris C A Spencer; Annette I Burgess; Matti Pirinen; Caroline A Jackson; Matthew Traylor; Amy Strange; Zhan Su; Gavin Band; Paul D Syme; Rainer Malik; Joanna Pera; Bo Norrving; Robin Lemmens; Colin Freeman; Renata Schanz; Tom James; Deborah Poole; Lee Murphy; Helen Segal; Lynelle Cortellini; Yu-Ching Cheng; Daniel Woo; Michael A Nalls; Bertram Müller-Myhsok; Christa Meisinger; Udo Seedorf; Helen Ross-Adams; Steven Boonen; Dorota Wloch-Kopec; Valerie Valant; Julia Slark; Karen Furie; Hossein Delavaran; Cordelia Langford; Panos Deloukas; Sarah Edkins; Sarah Hunt; Emma Gray; Serge Dronov; Leena Peltonen; Solveig Gretarsdottir; Gudmar Thorleifsson; Unnur Thorsteinsdottir; Kari Stefansson; Giorgio B Boncoraglio; Eugenio A Parati; John Attia; Elizabeth Holliday; Chris Levi; Maria-Grazia Franzosi; Anuj Goel; Anna Helgadottir; Jenefer M Blackwell; Elvira Bramon; Matthew A Brown; Juan P Casas; Aiden Corvin; Audrey Duncanson; Janusz Jankowski; Christopher G Mathew; Colin N A Palmer; Robert Plomin; Anna Rautanen; Stephen J Sawcer; Richard C Trembath; Ananth C Viswanathan; Nicholas W Wood; Bradford B Worrall; Steven J Kittner; Braxton D Mitchell; Brett Kissela; James F Meschia; Vincent Thijs; Arne Lindgren; Mary Joan Macleod; Agnieszka Slowik; Matthew Walters; Jonathan Rosand; Pankaj Sharma; Martin Farrall; Cathie L M Sudlow; Peter M Rothwell; Martin Dichgans; Peter Donnelly; Hugh S Markus
Journal:  Nat Genet       Date:  2012-02-05       Impact factor: 38.330

9.  The human proteome - a scientific opportunity for transforming diagnostics, therapeutics, and healthcare.

Authors:  Marc Vidal; Daniel W Chan; Mark Gerstein; Matthias Mann; Gilbert S Omenn; Danilo Tagle; Salvatore Sechi
Journal:  Clin Proteomics       Date:  2012-07-03       Impact factor: 3.988

10.  Human disease classification in the postgenomic era: a complex systems approach to human pathobiology.

Authors:  Joseph Loscalzo; Isaac Kohane; Albert-Laszlo Barabasi
Journal:  Mol Syst Biol       Date:  2007-07-10       Impact factor: 11.429

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  41 in total

1.  Mouse Genome-Wide Association Study of Preclinical Group II Pulmonary Hypertension Identifies Epidermal Growth Factor Receptor.

Authors:  Neil J Kelly; Josiah E Radder; Jeffrey J Baust; Christine L Burton; Yen-Chun Lai; Karin C Potoka; Brittani A Agostini; John P Wood; Timothy N Bachman; Rebecca R Vanderpool; Nadine Dandachi; Adriana S Leme; Alyssa D Gregory; Alison Morris; Ana L Mora; Mark T Gladwin; Steven D Shapiro
Journal:  Am J Respir Cell Mol Biol       Date:  2017-04       Impact factor: 6.914

2.  Evaluation of patients diagnosed with essential arterial hypertension through network analysis.

Authors:  L Suciu; C Cristescu; A Topîrceanu; L Udrescu; M Udrescu; V Buda; M C Tomescu
Journal:  Ir J Med Sci       Date:  2015-08-29       Impact factor: 1.568

Review 3.  Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine.

Authors:  Avishek Kumar; Brandon M Butler; Sudhir Kumar; S Banu Ozkan
Journal:  Curr Opin Struct Biol       Date:  2015-12-09       Impact factor: 6.809

4.  Personalized respiratory medicine: exploring the horizon, addressing the issues. Summary of a BRN-AJRCCM workshop held in Barcelona on June 12, 2014.

Authors:  Alvar Agustí; Josep Maria Antó; Charles Auffray; Ferran Barbé; Esther Barreiro; Jordi Dorca; Joan Escarrabill; Rosa Faner; Laura I Furlong; Judith Garcia-Aymerich; Joaquim Gea; Bertil Lindmark; Eduard Monsó; Vicente Plaza; Milo A Puhan; Josep Roca; Juan Ruiz-Manzano; Laura Sampietro-Colom; Ferran Sanz; Luis Serrano; James Sharpe; Oriol Sibila; Edwin K Silverman; Peter J Sterk; Jacob I Sznajder
Journal:  Am J Respir Crit Care Med       Date:  2015-02-15       Impact factor: 21.405

Review 5.  Pharmacogenomics of chronic obstructive pulmonary disease.

Authors:  Craig P Hersh
Journal:  Expert Rev Respir Med       Date:  2019-04-08       Impact factor: 3.772

6.  Chronic Obstructive Pulmonary Disease Genetics: A Review of the Past and a Look Into the Future.

Authors:  Megan Hardin; Edwin K Silverman
Journal:  Chronic Obstr Pulm Dis       Date:  2014-05-06

7.  Multiomics Approach to Asthma: Navigating the Network.

Authors:  Merry-Lynn McDonald
Journal:  Am J Respir Cell Mol Biol       Date:  2017-10       Impact factor: 6.914

8.  Genome-wide association and network analysis of lung function in the Framingham Heart Study.

Authors:  Shu-Yi Liao; Xihong Lin; David C Christiani
Journal:  Genet Epidemiol       Date:  2014-07-08       Impact factor: 2.135

Review 9.  Integrating omics technologies to study pulmonary physiology and pathology at the systems level.

Authors:  Ravi Ramesh Pathak; Vrushank Davé
Journal:  Cell Physiol Biochem       Date:  2014-04-28

10.  Beyond GWAS in COPD: probing the landscape between gene-set associations, genome-wide associations and protein-protein interaction networks.

Authors:  Merry-Lynn Noelle McDonald; Manuel Mattheisen; Michael H Cho; Yang-Yu Liu; Benjamin Harshfield; Craig P Hersh; Per Bakke; Amund Gulsvik; Christoph Lange; Terri H Beaty; Edwin K Silverman
Journal:  Hum Hered       Date:  2014-08-27       Impact factor: 0.444

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