Literature DB >> 22933776

Genome sequence of Methylobacterium sp. strain GXF4, a xylem-associated bacterium isolated from Vitis vinifera L. grapevine.

Han Ming Gan1, Teong Han Chew, André O Hudson, Michael A Savka.   

Abstract

Methylobacterium sp. strain GXF4 is an isolate from grapevine. Here we present the sequence, assembly, and annotation of its genome, which may shed light on its role as a grapevine xylem inhabitant. To our knowledge, this is the first genome announcement of a plant xylem-associated strain of the genus Methylobacterium.

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Year:  2012        PMID： 22933776      PMCID： PMC3430323          DOI： 10.1128/JB.01201-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

Review 1.  Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view.

Authors:  Ludmila Chistoserdova; Sung-Wei Chen; Alla Lapidus; Mary E Lidstrom
Journal:  J Bacteriol       Date:  2003-05       Impact factor: 3.490

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Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 3.  Cell wall biology: perspectives from cell wall imaging.

Authors:  Kieran J D Lee; Susan E Marcus; J Paul Knox
Journal:  Mol Plant       Date:  2011-01-03       Impact factor: 13.164

4.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

5.  Fastidious xylem-limited bacterial plant pathogens.

Authors:  A H Purcell; D L Hopkins
Journal:  Annu Rev Phytopathol       Date:  1996       Impact factor: 13.078

6.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  7 in total
  7 in total

1.  Integrated metatranscriptome and transcriptome reveals the microbial community composition and physiological function of xylem sap on grapevine during bleeding period.

Authors:  Ting Zheng; Kekun Zhang; Xudong Zhu; Le Guan; Songtao Jiu; Xiaopeng Li; Mazzullah Nasim; Haifeng Jia; Jinggui Fang
Journal:  Genes Genomics       Date:  2019-06-24       Impact factor: 1.839

2.  Primer Choice and Xylem-Microbiome-Extraction Method Are Important Determinants in Assessing Xylem Bacterial Community in Olive Trees.

Authors:  Manuel Anguita-Maeso; Carmen Haro; Juan A Navas-Cortés; Blanca B Landa
Journal:  Plants (Basel)       Date:  2022-05-16

3.  Draft Genome Sequence of Methylobacterium sp. Strain L2-4, a Leaf-Associated Endophytic N-Fixing Bacterium Isolated from Jatropha curcas L.

Authors:  Munusamy Madhaiyan; Kam Lock Chan; Lianghui Ji
Journal:  Genome Announc       Date:  2014-12-11

Review 4.  Biotechnological and agronomic potential of endophytic pink-pigmented methylotrophic Methylobacterium spp.

Authors:  Manuella Nóbrega Dourado; Aline Aparecida Camargo Neves; Daiene Souza Santos; Welington Luiz Araújo
Journal:  Biomed Res Int       Date:  2015-03-10       Impact factor: 3.411

5.  Whole genome analysis of Klebsiella pneumoniae T2-1-1 from human oral cavity.

Authors:  Kok-Gan Chan; Wai-Fong Yin; Xin-Yue Chan
Journal:  Genom Data       Date:  2015-12-17

6.  Plant growth promotion potential is equally represented in diverse grapevine root-associated bacterial communities from different biopedoclimatic environments.

Authors:  Ramona Marasco; Eleonora Rolli; Marco Fusi; Ameur Cherif; Ayman Abou-Hadid; Usama El-Bahairy; Sara Borin; Claudia Sorlini; Daniele Daffonchio
Journal:  Biomed Res Int       Date:  2013-06-26       Impact factor: 3.411

7.  Whole-Genome Sequencing Reveals a New Genospecies of Methylobacterium sp. GXS13, Isolated from Vitis vinifera L. Xylem Sap.

Authors:  Wan Xin Lai; Han Ming Gan; André O Hudson; Michael A Savka
Journal:  Genome Announc       Date:  2016-02-04
  7 in total

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