Literature DB >> 22933772

Draft genome sequence of Brevibacterium massiliense strain 541308T.

Véronique Roux1, Catherine Robert, Grégory Gimenez, Didier Raoult.   

Abstract

A draft genome sequence of Brevibacterium massiliense, an aerobic bacterium isolated from a human ankle discharge, is described here. CRISPR-associated proteins were found to be encoded in the genome, and analysis of transport proteins was performed.

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Year:  2012        PMID： 22933772      PMCID： PMC3430361          DOI： 10.1128/JB.01182-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

Review 2.  RNA-guided genetic silencing systems in bacteria and archaea.

Authors:  Blake Wiedenheft; Samuel H Sternberg; Jennifer A Doudna
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

3.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

4.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  Brevibacterium massiliense sp. nov., isolated from a human ankle discharge.

Authors:  Véronique Roux; Didier Raoult
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-30       Impact factor: 2.747

Review 6.  Transport capabilities of eleven gram-positive bacteria: comparative genomic analyses.

Authors:  Graciela L Lorca; Ravi D Barabote; Vladimir Zlotopolski; Can Tran; Brit Winnen; Rikki N Hvorup; Aaron J Stonestrom; Elizabeth Nguyen; Li-Wen Huang; David S Kim; Milton H Saier
Journal:  Biochim Biophys Acta       Date:  2007-02-17

7.  UniProt Knowledgebase: a hub of integrated protein data.

Authors:  Michele Magrane
Journal:  Database (Oxford)       Date:  2011-03-29       Impact factor: 3.451

8.  CharProtDB: a database of experimentally characterized protein annotations.

Authors:  Ramana Madupu; Alexander Richter; Robert J Dodson; Lauren Brinkac; Derek Harkins; Scott Durkin; Susmita Shrivastava; Granger Sutton; Daniel Haft
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

9.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  10 in total
  2 in total

1.  Brevibacterium massiliense bacteremia.

Authors:  Maude Vecten; Frédérique Gouriet; Aline Cano; Didier Raoult
Journal:  IDCases       Date:  2016-11-25

2.  Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat.

Authors:  Nguyen-Phuong Pham; Séverine Layec; Eric Dugat-Bony; Marie Vidal; Françoise Irlinger; Christophe Monnet
Journal:  BMC Genomics       Date:  2017-12-07       Impact factor: 3.969
  2 in total

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