Literature DB >> 22933764

Genome sequence of Novosphingobium sp. strain Rr 2-17, a nopaline crown gall-associated bacterium isolated from Vitis vinifera L. grapevine.

Han Ming Gan1, Teong Han Chew, André O Hudson, Michael A Savka.   

Abstract

Novosphingobium sp. strain Rr 2-17 is an N-acyl homoserine lactone (AHL)-producing bacterium isolated from the crown gall tumor of a grapevine. To our knowledge, this is the first draft genome announcement of a plant-associated strain from the genus Novosphingobium.

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Year:  2012        PMID： 22933764      PMCID： PMC3430328          DOI： 10.1128/JB.01159-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  The natural history of nitrogen fixation.

Authors:  Jason Raymond; Janet L Siefert; Christopher R Staples; Robert E Blankenship
Journal:  Mol Biol Evol       Date:  2003-12-23       Impact factor: 16.240

2.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

3.  CROWN GALL OF GRAPE: Biology and Disease Management.

Authors:  Thomas J. Burr; Leon Otten
Journal:  Annu Rev Phytopathol       Date:  1999       Impact factor: 13.078

4.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

5.  Production of acyl-homoserine lactone quorum-sensing signals by gram-negative plant-associated bacteria.

Authors:  C Cha; P Gao; Y C Chen; P D Shaw; S K Farrand
Journal:  Mol Plant Microbe Interact       Date:  1998-11       Impact factor: 4.171

6.  Octopine and nopaline oxidases from Ti plasmids of Agrobacterium tumefaciens: molecular analysis, relationship, and functional characterization.

Authors:  H Zanker; G Lurz; U Langridge; P Langridge; D Kreusch; J Schröder
Journal:  J Bacteriol       Date:  1994-08       Impact factor: 3.490

7.  Identification of an rsh gene from a Novosphingobium sp. necessary for quorum-sensing signal accumulation.

Authors:  Han Ming Gan; Larry Buckley; Erno Szegedi; André O Hudson; Michael A Savka
Journal:  J Bacteriol       Date:  2009-02-06       Impact factor: 3.490

Review 8.  Agrobacterium tumefaciens as an agent of disease.

Authors:  Matthew A Escobar; Abhaya M Dandekar
Journal:  Trends Plant Sci       Date:  2003-08       Impact factor: 18.313

9.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  10 in total
  5 in total

1.  Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Authors:  Frank O Aylward; Bradon R McDonald; Sandra M Adams; Alejandra Valenzuela; Rebeccah A Schmidt; Lynne A Goodwin; Tanja Woyke; Cameron R Currie; Garret Suen; Michael Poulsen
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

2.  Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains.

Authors:  Stephen L Pearce; John G Oakeshott; Gunjan Pandey
Journal:  G3 (Bethesda)       Date:  2015-04-07       Impact factor: 3.154

3.  Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation.

Authors:  Han Ming Gan; André O Hudson; Ahmad Yamin Abdul Rahman; Kok Gan Chan; Michael A Savka
Journal:  BMC Genomics       Date:  2013-06-28       Impact factor: 3.969

4.  Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family.

Authors:  Han Ming Gan; Huan You Gan; Nurul H Ahmad; Nazrin A Aziz; André O Hudson; Michael A Savka
Journal:  Front Cell Infect Microbiol       Date:  2015-01-08       Impact factor: 5.293

5.  Genome sequencing-assisted identification and the first functional validation of N-acyl-homoserine-lactone synthases from the Sphingomonadaceae family.

Authors:  Han Ming Gan; Lucas K Dailey; Nigel Halliday; Paul Williams; André O Hudson; Michael A Savka
Journal:  PeerJ       Date:  2016-08-30       Impact factor: 2.984
  5 in total

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