| Literature DB >> 22927880 |
Ji Hye Lim1, Mi Mi Ko, Hoyoung Lee, Ho Yeon Go, Tae-Woong Moon, Min Ho Cha, Myeong Soo Lee.
Abstract
Uncoupling protein 2 (UCP2), a mitochondrial protein present in many organs and cell types, is known to dissipate the proton gradient formed by the electron transport chain. Its function is correlated with predictive parameters, such as obesity, diabetes, and metabolic syndromes. We analyzed the distribution of UCP2 polymorphisms in stroke patients diagnosed with one of the following four stroke subtypes based on the TKM standard pattern identification (PI): Qi-deficiency (QD), Dampness and Phlegm (D&P), Yin-deficiency (YD), and Fire and Heat (F&D). We studied a total of 1,786 stroke patients (397/QD, 645/D&P, 223/YD, and 522/F&D, 586/normal). Genotyping for the G-1957A, G-866A and A55V UCP2 polymorphisms was performed using the TaqMan. G-866A and A55V were significantly associated with the D&P and H&F subtypes. The frequency of subjects with the A allele of G-866A was significantly lower than the frequency of subjects with the GG type. The A55V polymorphism was also shown similar effect with G-866A in the dominant model. In contrast, no SNPs were shown to be associated with the QD or YD subtypes in this study. These results showed that the G-866A and A55V UCP2 polymorphisms may be genetic factors for specific PI types among Korean stroke patients.Entities:
Year: 2012 PMID: 22927880 PMCID: PMC3424818 DOI: 10.1155/2012/532078
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
List of the SNPs analyzed in this study.
| SNP | rs no. | Position | Location relative to transcription start site | Nucleotide (amino acid) change | Location relative to p-terminus of chromosome | MAF | HWEp |
|---|---|---|---|---|---|---|---|
| G-1957A | rs649446 | Promoter | −1957 | G/A | 73695845 | 0.3147 | 0.138 |
| G-866A | rs659366 | Promoter | −866 | G/A | 73694754 | 0.4955 | 0.051 |
| A55V | rs660339 | exon 2 | 4787 | G/A (A/V) | 73689104 | 0.4871 | 0.06 |
Clinical differences among the pattern identification groups of Korean stroke patients.
| Characteristics | Control | Qi deficiency |
| Dampness & Phlegm |
| Yin deficiency |
| Fire & Heat |
|
|---|---|---|---|---|---|---|---|---|---|
|
| 588 | 397 | 645 | 223 | 521 | ||||
| Anthropometric characteristics | |||||||||
| Sex (M/F) | 273/314∗ | 135/262 | <.0001 | 314/331 | 0.445 | 97/126 | 0.4424 | 387/135 | <.0001 |
| Age (year) | 64 (58, 69)# | 69 (60, 77) | <.0001 | 69 (61, 75) | <.0001 | 73 (65, 79) | <.0001 | 68 (59, 75) | <.0001 |
| Smoking (none/stop/active) | 299/232/56 | 278/51/68 | <.0001 | 396/95/153 | <.0001 | 144/46/33 | <.0001 | 202/129/191 | <.0001 |
| Drinking (none/stop/active) | 357/35/195 | 260/37/100 | 0.0084 | 381/66/196 | 0.021 | 137/25/61 | 0.0205 | 186/81/255 | <.0001 |
| Weight (kg) | 62.0 (56.0, 69.0) | 56.6 (50.0, 62.8) | <.0001 | 70.0 (63.0, 78.0) | 0.046 | 56.1 (50.0, 64.0) | <.0001 | 65.0 (57.0, 72.0) | 0.0012 |
| BMI (kg/m2) | 24.2 (22.6, 26.0) | 22.6 (20.9, 24.4) | <.0001 | 24.6 (22.5, 26.7) | 0.059 | 22.5 (20.5, 24.7) | <.0001 | 24.0 (22.0, 26.1) | 0.12 |
| Waist circumference (cm) | 85.0 (79.3, 90.0) | 85.0 (79.0, 91.0) | 0.436 | 89.0 (82.0, 95.0) | <.0001 | 83.0 (76.0, 89.0) | 0.042 | 88.0 (82.0, 94.0) | <.0001 |
| WHR | 0.88 (0.84, 0.91) | 0.92 (0.88, 0.96) | <.0001 | 0.94 (0.90, 0.97) | <.0001 | 0.93 (0.89, 0.96) | <.0001 | 0.94 (0.90, 0.98) | <.0001 |
| History | |||||||||
| TIA (Yes) | 15 | 30 | 0.0002 | 53 | <.0001 | 26 | <.0001 | 42 | <.0001 |
| Hypertension (Yes) | 107 | 232 | <.0001 | 416 | <.0001 | 131 | <.0001 | 325 | <.0001 |
| Hyperlipidemia (Yes) | 70 | 50 | 0.7163 | 96 | 0.1242 | 19 | 0.1689 | 55 | 0.5114 |
| Diabetes (Yes) | 40 | 103 | <.0001 | 187 | <.0001 | 57 | <.0001 | 143 | <.0001 |
| Heart disease (Yes) | 0 | 23 | <.0001 | 48 | <.0001 | 14 | <.0001 | 27 | <.0001 |
| Serum parameter | |||||||||
| GOP (U/mL) | 23.0 (20.0, 29.0) | 22.0 (18.0, 28.0) | <.0001 | 23.0 (18.0, 28.1) | 0.0005 | 22.0 (18.0, 28.0) | 0.0009 | 23.0 (18.0, 31.0) | 0.1316 |
| GPT (U/mL) | 21.0 (16.0, 30.0) | 18.0 (13.0, 28.0) | <.0001 | 19.0 (14.0, 28.0) | <.0001 | 17.0 (13.0, 26.0) | <.0001 | 21.0 (15.0, 32.0) | 0.4774 |
| Total cholesterol (mg/dL) | 199.0 (175.0, 226.0) | 178.0 (154.0, 211.0) | <.0001 | 189.0 (160.0, 219.0) | <.0001 | 185.0 (159.0, 212.0) | <.0001 | 178.0 (148.0, 207.0) | <.0001 |
| Triglyceride (mg/dL) | 131.0 (91.0, 182.0) | 121.0 (88.0, 175.6) | 0.398 | 132.0 (94.0, 195.0) | 0.1055 | 123.5 (83.0, 174.0) | 0.2128 | 131.5 (93.0, 194.0) | 0.3019 |
| HDL-cholesterol (mg/dL) | 51.0 (43.2, 59.9) | 42.9 (35.9, 52.0) | <.0001 | 41.0 (33.5, 48.8) | <.0001 | 42.7 (35.1, 49.4) | <.0001 | 41.0 (34.0, 49.0) | <.0001 |
| Blood sugar (mg/dL) | 99.0 (92.0, 106.0) | 101.5 (91.0, 130.0) | 0.0023 | 107.0 (94.0, 128.0) | <.0001 | 107.0 (98.0, 141.0) | <.0001 | 105.0 (94.0, 128.5) | <.0001 |
∗Indicates number of subjects, and #indicates value of median (25% and 75% interquartiles). The P value of categorized variables was calculated by a chi-squared test or Fisher's test, and continuous values were analyzed by a Mann-Whitney U test after a normality test and compared with the normal group.
Figure 1(a) Map of the SNPs located in the UCP2 gene. The values in parentheses show the minor allele frequency. The open and closed boxes in the exons indicate the untranslated and translated regions, respectively. (b) Linkage distribution among three SNPs.
Allele and genotype distribution of the SNPs between the control group and each PI group.
| Allele | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Allele | Normal | QD | OR (952 CI) |
| D&P | OR (952 CI) |
| YD | OR (952 CI) |
| F&H | OR (952 CI) |
| |
| G-1957A | G | 784 (68.53) | 543 (68.73) | 0.983 | 0.8738 | 910 (70.87) | 0.881 | 0.193 | 306 (68.92) | 0.885 | 0.367 | 748 (72.06) | 0.819 | 0.0628 | |
| A | 360 (31.47) | 247 (31.27) | (0.793–1.218) | 374 (29.13) | (0.727–1.066) | 138 (31.08) | (0.678–1.154) | 290 (27.94) | (0.663–1.011) | ||||||
| G-866A | G | 561 (50.45) | 408 (51.78) | 0.970 | 0.7647 | 689 (53.74) | 0.866 | 0.1129 | 220 (49.33) | 1.039 | 0.7603 | 552 (53.08) | 0.870 | 0.1577 | |
| A | 551(49.55) | 380 (48.22) | (0.794–1.185) | 593 (46.26) | (0.726–1.034) | 226 (50.67) | (0.813–1.328) | 488 (46.92) | (0.717–1.055) | ||||||
| A55V | G | 598 (51.29) | 409 (51.90) | 0.967 | 0.7451 | 691 (54.15) | 0.874 | 0.1306 | 227 (50.90) | 1.033 | 0.7959 | 561 (54.15) | 0.866 | 0.1418 | |
| A | 568 (48.71) | 379 (48.10) | (0.793–1.178) | 585 (45.85) | (0.733–1.041) | 219 (49.10) | (0.809–1.317) | 475 (45.85) | (0.715–1.049) | ||||||
|
| |||||||||||||||
| Genotype | |||||||||||||||
| Model | SNP | Genotype | Normal | QD | OR (952 CI) |
| D&P | OR (952 CI) |
| YD | OR (952 CI) |
| F&H | OR (952 CI) |
|
|
| |||||||||||||||
| G-1957A | GG | 261 (45.6) | 191 (48.42) | 0.892 | 0.426 | 321 (50.00) | 0.824 | 0.131 | 110 (49.55) | 0.757 | 0.116 | 270 (52.02) | 0.702 |
| |
| GA + AA | 311 (54.4) | 204 (51.62) | (0.672–1.183) | 321 (50.00) | (0.642–1.059) | 112 (50.45) | (0.534–1.071) | 249 (47.98) | (0.534–0.924) | ||||||
| Do | G-866A | GG | 130 (23.4) | 107 (27.22) | 0.826 | 0.249 | 195 (30.42) | 0.668 |
| 58 (26.01) | 0.817 | 0.324 | 146 (28.08) | 0.647 |
|
| GA + AA | 426 (76.6) | 287 (72.82) | (0.596–1.144) | 446 (69.58) | (0.501–0.890) | 165 (73.99) | (0.548–1.220) | 374 (71.92) | (0.472–0.886) | ||||||
| A55V | GG | 142 (24.4) | 109 (27.72) | 0.814 | 0.207 | 198 (31.03) | 0.694 |
| 62 (27.80) | 0.771 | 0.194 | 154 (29.73) | 0.653 |
| |
| GA + AA | 441 (75.6) | 285 (72.32) | (0.591–1.121) | 440 (68.97) | (0.525–0.918) | 161 (72.20) | (0.522–1.141) | 364 (70.27) | (0.480–0.888) | ||||||
|
| |||||||||||||||
| G-1957A | GG + GA | 523 (91.4) | 352 (89.12) | 1.273 | 0.32 | 589 (91.74) | 0.927 | 0.738 | 196 (88.29) | 1.213 | 0.513 | 478 (92.10) | 1.049 | 0.847 | |
| AA | 49 (8.6) | 43 (10.92) | (0.791–2.05) | 53 (8.26) | (0.595–1.444) | 26 (11.71) | (0.680–2.166) | 41 (7.90) | (0.644–1.710) | ||||||
| Re | G-866A | GG + GA | 431 (77.5) | 301 (76.42) | 1.125 | 0.493 | 494 (77.07) | 1.038 | 0.805 | 162 (72.65) | 1.359 | 0.134 | 406 (78.08) | 1.075 | 0.662 |
| AA | 125 (22.5) | 93 (23.62) | (0.804–1.575) | 147 (22.93) | (0.770–1.401) | 61 (27.35) | (0.910–2.030) | 114 (21.92) | (0.777–1.489) | ||||||
| A55V | GG+GA | 456 (78.2) | 300 (76.12) | 1.135 | 0.455 | 493 (77.27) | 1.029 | 0.853 | 165 (73.99) | 1.204 | 0.367 | 407 (78.57) | 0.937 | 0.695 | |
| AA | 127 (21.8) | 94 (23.92) | (0.814–1.584) | 145 (22.73) | (0.764–1.385) | 58 (26.01) | (0.805–1.801) | 111 (21.43) | (0.677–1.297) | ||||||
Odd ratios and P values were calculated by binary logistic regression model after adjustment for sex, age, smoking, and drinking and compared to the normal group.
Association analysis of serum biochemical parameters by genotype of UCP2 in normal group.
| Parameter | Genotype |
| ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| G-866A | A55V | G-866A | A55V | |||||||
| GG | GA | AA | GG | GA | AA | Do | Re | Do | Re | |
|
| 130 | 302 | 125 | 142 | 315 | 127 | ||||
| Body characteristics | ||||||||||
| Weight (kg) | 61.78 ± 8.57 | 62.78 ± 9.64 | 63.29 ± 8.87 | 61.72 ± 8.34 | 62.77 ± 9.84 | 62.9 ± 8.99 | 0.9198 | 0.8045 | 0.966 | 0.9862 |
| BMI (kg/m2) | 24.5 ± 2.56 | 24.4 ± 2.86 | 24.31 ± 2.43 | 24.49 ± 2.51 | 24.41 ± 2.9 | 24.27 ± 2.48 | 0.5930 | 0.7802 | 0.5594 | 0.5889 |
| Waist circumference (cm) | 83.82 ± 7.58 | 84.7 ± 8.39 | 87.44 ± 30.33 | 83.84 ± 7.39 | 84.69 ± 8.49 | 87.25 ± 30.16 | 0.6955 | 0.0888 | 0.7126 | 0.1086 |
| WHR | 0.87 ± 0.09 | 0.88 ± 0.05 | 0.9 ± 0.3 | 0.87 ± 0.09 | 0.88 ± 0.05 | 0.9 ± 0.29 | 0.5733 | 0.1024 | 0.5423 | 0.108 |
| Serum lipid parameters | ||||||||||
| Total cholesterol (mg/dL) | 204.6 ± 40.45 | 200.97 ± 40.35 | 201.2 ± 37.39 | 203.65 ± 39.47 | 200.91 ± 40.13 | 203.32 ± 38.77 | 0.4809 | 0.9282 | 0.7317 | 0.6097 |
| Triglyceride (mg/dL) | 155.33 ± 99.57 | 141.94 ± 74.52 | 151.14 ± 72.41 | 158.58 ± 104.46 | 142.6 ± 74.7 | 148.82 ± 67.27 | 0.1073 | 0.6033 |
| 0.8815 |
| HDL-cholesterol (mg/dL) | 52.36 ± 12.9 | 52.73 ± 13.15 | 51.84 ± 13.02 | 52.68 ± 13.24 | 52.76 ± 13.15 | 52.08 ± 12.63 | 0.7847 | 0.7345 | 0.9756 | 0.6987 |
| Atherogenic index | 0.41 ± 0.30 | 0.39 ± 0.26 | 0.43 ± 0.26 | 0.41 ± 0.31 | 0.39 ± 0.26 | 0.43 ± 0.25 | 0.4996 | 0.2465 | 0.5006 | 0.3187 |
The value indicates the number of subjects (mean ± SD). The P value was calculated using a general linear model adjusted for sex, age, smoking, and drinking.