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Literature DB >> 22926765

Mass spectrometry based proteomics, background, status and future needs.

Abstract

An overview of the background for proteomics and a description of the present state of art are given with a description of the main strategies in proteomics. The advantages and limitations of the two major strategies, 2D-gel based and LC-MS based, are discussed and a combination for the two, CeLC-MS is described. A number of challenging problems which have been solved using different proteomics strategies including the advantage of organell enrichment or modifications specific peptide isolation to get deeper into the proteome are described. Finally the present status and future needs discussed.

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Year: 2012 PMID： 22926765 PMCID： PMC4875375 DOI： 10.1007/s13238-012-2079-5

Source DB: PubMed Journal: Protein Cell ISSN： 1674-800X Impact factor: 14.870

19 in total

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Authors: Matthias Mann; Ole N Jensen
Journal: Nat Biotechnol Date: 2003-03 Impact factor: 54.908

2. Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling.

Authors: Kasper Engholm-Keller; Thomas Aarup Hansen; Giuseppe Palmisano; Martin R Larsen
Journal: J Proteome Res Date: 2011-10-26 Impact factor: 4.466

3. Identification of nitrotyrosine containing peptides using combined fractional diagonal chromatography (COFRADIC) and off-line nano-LC-MALDI.

Authors: Trine R Larsen; Nicolai Bache; Jan Bert Gramsbergen; Peter Roepstorff
Journal: J Am Soc Mass Spectrom Date: 2011-03-08 Impact factor: 3.109

4. From proteins to proteomes: large scale protein identification by two-dimensional electrophoresis and amino acid analysis.

Authors: M R Wilkins; C Pasquali; R D Appel; K Ou; O Golaz; J C Sanchez; J X Yan; A A Gooley; G Hughes; I Humphery-Smith; K L Williams; D F Hochstrasser
Journal: Biotechnology (N Y) Date: 1996-01

5. Proteomic profile of the nucellus of castor bean (Ricinus communis L.) seeds during development.

Authors: Fábio C S Nogueira; Giuseppe Palmisano; Emanoella L Soares; Mohibullah Shah; Arlete A Soares; Peter Roepstorff; Francisco A P Campos; Gilberto B Domont
Journal: J Proteomics Date: 2012-01-14 Impact factor: 4.044

6. Error-tolerant identification of peptides in sequence databases by peptide sequence tags.

Authors: M Mann; M Wilm
Journal: Anal Chem Date: 1994-12-15 Impact factor: 6.986

7. Protein identification by mass profile fingerprinting.

Authors: P James; M Quadroni; E Carafoli; G Gonnet
Journal: Biochem Biophys Res Commun Date: 1993-08-31 Impact factor: 3.575

8. Time-resolved quantitative phosphoproteomics: new insights into Angiotensin-(1-7) signaling networks in human endothelial cells.

Authors: Thiago Verano-Braga; Veit Schwämmle; Marc Sylvester; Danielle G Passos-Silva; Antonio A B Peluso; Gisele M Etelvino; Robson A S Santos; Peter Roepstorff
Journal: J Proteome Res Date: 2012-04-26 Impact factor: 4.466

Review 9. Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques.

Authors: Yingming Zhao; Ole N Jensen
Journal: Proteomics Date: 2009-10 Impact factor: 3.984

10. Leaf-cutting ant fungi produce cell wall degrading pectinase complexes reminiscent of phytopathogenic fungi.

Authors: Morten Schiøtt; Adelina Rogowska-Wrzesinska; Peter Roepstorff; Jacobus J Boomsma
Journal: BMC Biol Date: 2010-12-31 Impact factor: 7.431

13 in total

1. Label-free quantitative mass spectrometry for analysis of protein antigens in a meningococcal group B outer membrane vesicle vaccine.

Authors: Lawrence W Dick; John T Mehl; John W Loughney; Anna Mach; Richard R Rustandi; Sha Ha; Lan Zhang; Craig T Przysiecki; Lance Dieter; Van M Hoang
Journal: Hum Vaccin Immunother Date: 2015 Impact factor: 3.452

2. Comparative Proteomic Analysis of Rat Bronchoalveolar Lavage Fluid after Exposure to Zinc Oxide Nanoparticles.

Authors: Yu-Min Juang; Han-Ju Chien; Cheng-Yu Yang; Hsiao-Chien Yeh; Tsun-Jen Cheng; Chien-Chen Lai
Journal: Mass Spectrom (Tokyo) Date: 2017-03-24

3. The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.

Authors: Gerhard Mayer; Luisa Montecchi-Palazzi; David Ovelleiro; Andrew R Jones; Pierre-Alain Binz; Eric W Deutsch; Matthew Chambers; Marius Kallhardt; Fredrik Levander; James Shofstahl; Sandra Orchard; Juan Antonio Vizcaíno; Henning Hermjakob; Christian Stephan; Helmut E Meyer; Martin Eisenacher
Journal: Database (Oxford) Date: 2013-03-12 Impact factor: 3.451

4. Investigations of the mechanism of the "proline effect" in tandem mass spectrometry experiments: the "pipecolic acid effect".

Authors: Mary Disa M Raulfs; Linda Breci; Matthew Bernier; Omar M Hamdy; Ashley Janiga; Vicki Wysocki; John C Poutsma
Journal: J Am Soc Mass Spectrom Date: 2014-07-31 Impact factor: 3.109

5. A meta-analysis to evaluate the cellular processes regulated by the interactome of endogenous and over-expressed estrogen receptor alpha.

Authors: Rui Vitorino; Luisa A Helguero; Joana Simões; Francisco M Amado
Journal: Oncoscience Date: 2015-03-07

6. Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale.

Authors: Xuemei Han; Yueju Wang; Aaron Aslanian; Marshall Bern; Mathieu Lavallée-Adam; John R Yates
Journal: Anal Chem Date: 2014-10-30 Impact factor: 6.986

7. Comparative proteomic analysis of plasma from bipolar depression and depressive disorder: identification of proteins associated with immune regulatory.

Authors: Jin Chen; ChengLong Huang; YiRen Song; HaiYang Shi; Dong Wu; YongTao Yang; ChengLong Rao; Li Liao; You Wu; JianYong Tang; Ke Cheng; Jian Zhou; Peng Xie
Journal: Protein Cell Date: 2015-12 Impact factor: 14.870

8. Mapping the differential distribution of proteoglycan core proteins in the adult human retina, choroid, and sclera.

Authors: Tiarnan D L Keenan; Simon J Clark; Richard D Unwin; Liam A Ridge; Anthony J Day; Paul N Bishop
Journal: Invest Ophthalmol Vis Sci Date: 2012-11-07 Impact factor: 4.799

Review 9. Proteomic approaches in biomarker discovery: new perspectives in cancer diagnostics.

Authors: Petra Hudler; Nina Kocevar; Radovan Komel
Journal: ScientificWorldJournal Date: 2014-01-14

10. Gender-specific effects of intrauterine growth restriction on the adipose tissue of adult rats: a proteomic approach.

Authors: Adriana Pereira de Souza; Amanda Paula Pedroso; Regina Lúcia Harumi Watanabe; Ana Paula Segantine Dornellas; Valter Tadeu Boldarine; Helen Julie Laure; Claudia Maria Oller do Nascimento; Lila Missae Oyama; José Cesar Rosa; Eliane Beraldi Ribeiro
Journal: Proteome Sci Date: 2015-12-02 Impact factor: 2.480