| Literature DB >> 22924058 |
Tianchan Niu1, Holly D Gaff, Yiannis E Papelis, David M Hartley.
Abstract
As a category A agent in the Center for Disease Control bioterrorism list, Rift Valley fever (RVF) is considered a major threat to the United States (USA). Should the pathogen be intentionally or unintentionally introduced to the continental USA, there is tremendous potential for economic damages due to loss of livestock, trade restrictions, and subsequent food supply chain disruptions. We have incorporated the effects of space into a mathematical model of RVF in order to study the dynamics of the pathogen spread as affected by the movement of humans, livestock, and mosquitoes. The model accounts for the horizontal transmission of Rift Valley fever virus (RVFV) between two mosquito and one livestock species, and mother-to-offspring transmission of virus in one of the mosquito species. Space effects are introduced by dividing geographic space into smaller patches and considering the patch-to-patch movement of species. For each patch, a system of ordinary differential equations models fractions of populations susceptible to, incubating, infectious with, or immune to RVFV. The main contribution of this work is a methodology for analyzing the likelihood of pathogen establishment should an introduction occur into an area devoid of RVF. Examples are provided for general and specific cases to illustrate the methodology.Entities:
Mesh:
Year: 2012 PMID: 22924058 PMCID: PMC3424773 DOI: 10.1155/2012/138757
Source DB: PubMed Journal: Comput Math Methods Med ISSN: 1748-670X Impact factor: 2.238
Figure 1Flow diagram of the Rift Valley fever model with spatial dynamics.
Biological meaning of model parameters.
| Parameter | Description | Unit |
|---|---|---|
|
| Adequate contact rate from | 1/day |
|
| Adequate contact rate from livestock to | 1/day |
|
| Adequate contact rate from livestock to | 1/day |
|
| Adequate contact rate from | 1/day |
| 1/ | Lifespan of | Day |
| 1/ | Lifespan of livestock on patch | Day |
| 1/ | Lifespan of | Day |
|
| Number of | 1/day |
|
| Daily birthrate of livestock on patch | 1/day |
|
| Number of | 1/day |
|
| Carrying capacity of livestock on patch | Heads |
| 1/ | Incubation period in | Day |
| 1/ | Incubation period in livestock on patch | Day |
| 1/ | Incubation period in | Day |
| 1/ | Infectiousness period in livestock on patch | Day |
| 1/ | RVF mortality rate in livestock on patch | 1/day |
|
| Transovarial transmission fraction in | Proportion |
| 1/ | Development time of | Day |
| 1/ | Development time of | Day |
|
| Travel rate of | 1/day |
|
| Travel rate of livestock from patch | 1/day |
|
| Travel rate of | 1/day |
Parameters with estimated ranges for numerical simulations.
| Parameter | (Range) | Reference |
|---|---|---|
|
| (0.0021, 0.2762) | [ |
|
| (0.0021, 0.2429) | [ |
|
| (0.0000, 0.3200) | [ |
|
| (0.0000, 0.0960) | [ |
| 1/ | (3, 60) | [ |
| 1/ | (360, 3600) | [ |
| 1/ | (3, 60) | [ |
|
|
| |
|
|
| |
|
|
| |
| 1/ | (4, 8) | [ |
| 1/ | (1, 6) | [ |
| 1/ | (4, 8) | [ |
| 1/ | (1, 5) | [ |
|
| (0.025, 0.1) | [ |
|
| (0.0, 0.1) | [ |
| 1/ | (5, 15) | [ |
| 1/ | (5, 15) | [ |
|
| (0, 1) | [ |
|
| (0, 1) | [ |
|
| (0, 1) | [ |
Figure 2Distribution of ℛ 0 values pooling a total of 700 sets of model parameters.
Significance test of parameters using PRCC.
| Parameter | PRCC |
| |||
|---|---|---|---|---|---|
|
| −0.2283 | <0.0001 | |||
|
| −0.1547 | <0.0001 | |||
|
| −0.1376 | 0.0005 | |||
|
| |||||
|
|
|
|
| ||
|
| |||||
|
| 0.3965 | 0.3235 | 0.3125 | 0.3594 | <0.0001 |
|
| 0.3259 | 0.3271 | 0.3752 | 0.3103 | <0.0001 |
|
| 0.1972 | 0.1973 | 0.2058 | 0.2083 | <0.0001 |
|
| 0.2149 | 0.2170 | 0.1706 | 0.1590 | <0.0001 |
| 1/ | 0.3491 | 0.2777 | 0.3216 | 0.3276 | <0.0001 |
| 1/ | 0.4474 | 0.4320 | 0.3983 | 0.1590 | <0.0001 |
| 1/ | 0.2345 | 0.1679 | 0.1779 | 0.2809 | <0.0001 |
Initial conditions of the 4-patch RVF model.
| Patch 1 | Patch 2, 3, and 4 | |
|---|---|---|
|
| 5000 | 5000 |
|
| 0 | 0 |
|
| 4999 | 5000 |
|
| 0 | 0 |
|
| 1 | 0 |
|
| 5000 | 5000 |
|
| 1000 | 1000 |
|
| 0 | 0 |
|
| 0 | 0 |
|
| 0 | 0 |
|
| 1000 | 1000 |
|
| 5000 | 5000 |
|
| 5000 | 5000 |
|
| 0 | 0 |
|
| 0 | 0 |
|
| 5000 | 5000 |
Parameter values used in the simulations.
| Parameter | Higher set | Lower set | |
|---|---|---|---|
|
| 0.480 | 0.150 | |
|
| 0.395 | 0.150 | |
|
| 0.560 | 0.150 | |
|
| 0.130 | 0.050 | |
|
| 0.0312 | 0.0176 | |
| 1/ | 10 | ||
| 1/ | 10 × 365, 5 × 365, 2 × 365 | ||
| 1/ | 10 | ||
|
|
| ||
|
|
| ||
|
|
| ||
| 1/ | 6 | ||
| 1/ | 4 | ||
| 1/ | 6 | ||
| 1/ | 4 | ||
|
| 0.05 | ||
|
| 0.1 | ||
|
| 0.1 | ||
|
| 1000 | ||
|
| 0.001 | ||
|
| 0.0025 | ||
|
| 0.001 |
Figure 3Results of numerical simulations for sheet and cattle with lower and higher set of contact rates. (a) Low contact rates and high RVFV related mortality rate. (b) Low contact rates and low RVFV-related mortality rate. (c) High contact rates and high RVFV related mortality rate. (d) High contact rates and low RVFV related mortality rate. Livestock lifespan is indicated for 10 years (solid line), 5 years (dashed line), and 2 years (dotted line).
ℛ 0 for the four simulations.
| Simulation cases |
| ||
|---|---|---|---|
| 1/ | 1/ | 1/ | |
| Lower | 0.8005 | 0.7998 | 0.7976 |
| Lower | 0.8405 | 0.8397 | 0.8372 |
| Higher | 2.2930 | 2.2908 | 2.2842 |
| Higher | 2.4112 | 2.4087 | 2.4015 |
Figure 4Simulations of a four-patch model with travel rates equal to (a) relatively larger travel rates: m 1 = m 3 = 0.001/day, m 2 = 0.0025/day and (b) relatively smaller travel rates: m 1 = m 3 = 0.00001/day, m 2 = 0.000025/day.
Figure 5Snapshots of the space of 400 patches with initial infection on the 1st patch.
Figure 6Snapshots of the space of 400 patches with initial infection on the center patch.
Figure 7ℛ 0 of the square HOT zone (dashed dot line), the COOL zone (dashed line) and the whole space (black line) on a 20 × 20-patch space as the number of patches in HOT zone increasing.
Figure 8ℛ 0 of the whole space on a 20 × 20-patch space as the number of patches in HOT zone increasing
Figure 9A prevalence figure of Rift Valley fever on a 20 × 20-patch space with a 100-patch HOT zone and a 300-patch COOL zone, whose parameter values are generated randomly by Latin hypercube sampling.
Figure 10The effect of natural barriers (three rivers as an example here) on the spatial spread of Rift Valley fever on a 20 × 20 patch space.