Literature DB >> 22921649

CORAL: QSPR model of water solubility based on local and global SMILES attributes.

Andrey A Toropov1, Alla P Toropova, Emilio Benfenati, Giuseppina Gini, Danuta Leszczynska, Jerzy Leszczynski.   

Abstract

Water solubility is an important characteristic of a chemical in many aspects. However experimental definition of the endpoint for all substances is impossible. In this study quantitative structure-property relationships (QSPRs) for negative logarithm of water solubility-logS (mol L(-1)) are built up for five random splits into the sub-training set (≈55%), the calibration set (≈25%), and the test set (≈20%). Simplified molecular input-line entry system (SMILES) is used as the representation of the molecular structure. Optimal SMILES-based descriptors are calculated by means of the Monte Carlo method using the CORAL software (http://www.insilico.eu/coral). These one-variable models for water solubility are characterized by the following average values of the statistical characteristics: n(sub_train)=725-763; n(calib)=312-343; n(test)=231-261; r(sub_train)(2)=0.9211±0.0028; r(calib)(2)=0.9555±0.0045; r(test)(2)=0.9365±0.0073; s(sub_train)=0.561±0.0086; s(calib)=0.453±0.0209; s(test)=0.520±0.0205. Thus, the reproducibility of statistical quality of suggested models for water solubility confirmed for five various splits.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22921649     DOI: 10.1016/j.chemosphere.2012.07.035

Source DB:  PubMed          Journal:  Chemosphere        ISSN: 0045-6535            Impact factor:   7.086


  2 in total

1.  Large-scale structure-activity relationship study of hepatitis C virus NS5B polymerase inhibition using SMILES-based descriptors.

Authors:  Apilak Worachartcheewan; Virapong Prachayasittikul; Alla P Toropova; Andrey A Toropov; Chanin Nantasenamat
Journal:  Mol Divers       Date:  2015-11       Impact factor: 2.943

2.  Descriptor Free QSAR Modeling Using Deep Learning With Long Short-Term Memory Neural Networks.

Authors:  Suman K Chakravarti; Sai Radha Mani Alla
Journal:  Front Artif Intell       Date:  2019-09-06
  2 in total

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