| Literature DB >> 22919324 |
N Pfeifer1, D M Baston-Büst, J Hirchenhain, U Friebe-Hoffmann, D T Rein, J S Krüssel, A P Hess.
Abstract
BACKGROUND: The aim of this paper was to determine the influence of different in vitro culture media on mRNA expression of Hedgehog genes, il-6, and important genes regarding reactive oxygen species in single mouse embryos.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22919324 PMCID: PMC3417195 DOI: 10.1100/2012/479315
Source DB: PubMed Journal: ScientificWorldJournal ISSN: 1537-744X
Sequences of oligonucleotides and annealing temperature used in reverse transcription and nested-PCR.
| mRNA |
|
| Size of the fragment (bp) | 3′-/5′-end | Sequence of oligonucleotide 5′→3′ |
|---|---|---|---|---|---|
|
| 54 | 407 | 5′ | CAA GGT GTG ATG GTG GGA ATG G | |
| 3′ | CAG GAT GGC GTG AGG GAG AGC A | ||||
|
| Outer pair | 55 | 530 | 5′ | GAG ACC CAA CTC CGA TGT GT |
| 3′ | GAT GTC GGG GTT GTA ATT GG | ||||
| Inner pair | 56 | 150 | 5′ | CTG GCC AGA TGT TTT CTG GT | |
| 3′ | CTC GGC TAC GTT GGG AAT AA | ||||
|
| Outer pair | 58 | 438 | 5′ | CAC TTG TGG TGG AGA TGT G |
| 3′ | TAC CAC ACG CTT GTC AGC TC | ||||
| Inner pair | 53 | 106 | 5′ | CTC TAA CCA CTG CCC TCC TG | |
| 3′ | AGA GGA CGG AGA CAA CCT CA | ||||
|
| Outer pair | 56 | 339 | 5′ | GTT CTC TGG GAA ATC GTG GA |
| 3′ | GGA AAT TGG GGT AGG AAG GA | ||||
| Inner pair | 56 | 226 | 5′ | TGT GCA ATG GCA ATT CTG AT | |
| 3′ | CTC TGA AGG ACT CTG GCT TTG | ||||
|
| Outer pair | 59 | 683 | 5′ | GGG ATG ACC ATA AGG GGA GT |
| 3′ | CCA GCC AGT GAG GAA GAG AC | ||||
| Inner pair | 59 | 216 | 5′ | TCC ATT TCC TTC CTG GAG TG | |
| 3′ | CCC AAC CAG TAC AGC CAC TT | ||||
|
| Outer pair | 58 | 410 | 5′ | AGT ACA GGG GTT TCG TGT GC |
| 3′ | CGG CAG GTC CTT CTC TAT CA | ||||
| Inner pair | 57 | 166 | 5′ | CCG GCT ACA ACG TCA AGT TT | |
| 3′ | ACG CAG CCG TTC TTA TCA AT | ||||
|
| Outer pair | 58 | 847 | 5′ | GTC CAC CGT GTA TGC CTT CT |
| 3′ | TCG ATG TCG ATG GTA CGA AA | ||||
| Inner pair | 45 | 278 | 5′ | GGT TCG AGC CCA ATT TTA CA | |
| 3′ | GGG CAC GCG TCC ATG TCG GC | ||||
|
| Outer pair | 56 | 946 | 5′ | TAG GGC TCT CTC GGT TTT GA |
| 3′ | TTG ACT GTG ATC TGG CGA AG | ||||
| Inner pair | 56 | 179 | 5′ | GGT GCC TTC AAG GAA ATC AA | |
| 3′ | GCC TAG CTT TCG GAA GTC CT |
Number of zygotes developed to blastocyst in correlation with gene expression of the mRNAs of interest.
|
|
|
| |
|---|---|---|---|
| Number of zygotes | unknown | 140 | 140 |
| Number of good quality blastocysts | 106 | 92 | 78 |
|
| |||
| No. of blastocyst with detectable mRNA expression of | |||
|
| 106/106 | 92/92 | 78/78 |
|
| 8/106 | 12/92 | 17/78 |
|
| 4/106 | 10/92 | 26/78 |
|
| 27/106 | 72/92 | 43/78 |
|
| 0/106 | 2/92 | 1/78 |
|
| 98/106 | 92/92 | 77/78 |
|
| 42/106 | 79/92 | 72/78 |
|
| 39/106 | 91/92 | 76/78 |
Figure 1Overview representing experimental time course from stimulation of female mice, isolation of embryos, and their early development (modified after [8]).
Frequency of detection of and prdx2 mRNA in single murine blastocyst with as internal standard.
| Specific mRNA expression (%) |
|
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|---|
|
| 100 | 8 | 4 | 25 | 0 | 92 | 40 | 37 |
|
| 100 | 13 | 11 | 78 | 2 | 100 | 86 | 99 |
|
| 100 | 22 | 33 | 55 | 1 | 99 | 92 | 97 |
Figure 2Quantitative analysis of mRNA expression of shh, and ihh of single murine blastocyst either cultured in vivo (white) or in vitro in COOK's Cleavage medium (grey) or in Vitrolife's G-1 PLUS medium (black) compared to as housekeeping gene with *P < 0.05; **P < 0.02; ***P < 0.01.
Figure 3Quantitative analysis of mRNA expression of il-6 of single murine blastocyst either cultured in vivo (white) or in vitro in COOK's Cleavage medium (grey) or in Vitrolife's G-1 PLUS medium (black) compared to as housekeeping gene with *P < 0.05; **P < 0.02; ***P < 0.01.
Figure 4Quantitative analysis of mRNA expression of nox, gpx4, gpx1 and prdx2 of single murine blastocyst either cultured in vivo (white) or in vitro in COOK's Cleavage medium (grey) or in Vitrolife's G-1 PLUS medium (black) compared to as housekeeping gene with *P < 0.05; **P < 0.02; ***P < 0.01.