Literature DB >> 22917154

Personalized medicine: applying 'omics' to lung fibrosis.

Jose D Herazo-Maya1, Naftali Kaminski.   

Abstract

Idiopathic pulmonary fibrosis (IPF), the most common fibrotic lung disease, is a chronic disease of unknown etiology with a very high mortality. Personalized medicine focuses on the use of the individual's molecular and 'omic' (i.e., genomic, epigenomic and proteomic) information to direct more efficient and cost-effective strategies for prevention, diagnosis, outcome prediction and treatment of diseases. In this review, we describe the use and promise of applying 'omic' technologies to the familial and sporadic forms of IPF as a means to personalize diagnosis and outcome prediction in IPF. The validation and implementation of such approaches will be crucial to personalize IPF patient care, prioritize lung transplant and stratify patients for drug studies, as well as, in the future, predict response to therapies as they emerge.

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Year:  2012        PMID: 22917154      PMCID: PMC3517740          DOI: 10.2217/bmm.12.38

Source DB:  PubMed          Journal:  Biomark Med        ISSN: 1752-0363            Impact factor:   2.851


  100 in total

1.  Cellular and humoral autoreactivity in idiopathic pulmonary fibrosis.

Authors:  Carol A Feghali-Bostwick; Christopher G Tsai; Vincent G Valentine; Stephen Kantrow; Michael W Stoner; Joseph M Pilewski; Aneal Gadgil; M Patricia George; Kevin F Gibson; Augustine M K Choi; Naftali Kaminski; Yingze Zhang; Steven R Duncan
Journal:  J Immunol       Date:  2007-08-15       Impact factor: 5.422

2.  ELMOD2 is a candidate gene for familial idiopathic pulmonary fibrosis.

Authors:  Ulla Hodgson; Ville Pulkkinen; Morag Dixon; Myriam Peyrard-Janvid; Marko Rehn; Paivi Lahermo; Vesa Ollikainen; Kaisa Salmenkivi; Vuokko Kinnula; Juha Kere; Pentti Tukiainen; Tarja Laitinen
Journal:  Am J Hum Genet       Date:  2006-05-09       Impact factor: 11.025

3.  When it comes to genes--IPF or NSIP, familial or sporadic--they're all the same.

Authors:  Ivan O Rosas; Naftali Kaminski
Journal:  Am J Respir Crit Care Med       Date:  2007-01-01       Impact factor: 21.405

Review 4.  Gene expression profiling as a window into idiopathic pulmonary fibrosis pathogenesis: can we identify the right target genes?

Authors:  Naftali Kaminski; Ivan O Rosas
Journal:  Proc Am Thorac Soc       Date:  2006-06

Review 5.  Acute exacerbations of idiopathic pulmonary fibrosis.

Authors:  Harold R Collard; Bethany B Moore; Kevin R Flaherty; Kevin K Brown; Robert J Kaner; Talmadge E King; Joseph A Lasky; James E Loyd; Imre Noth; Mitchell A Olman; Ganesh Raghu; Jesse Roman; Jay H Ryu; David A Zisman; Gary W Hunninghake; Thomas V Colby; Jim J Egan; David M Hansell; Takeshi Johkoh; Naftali Kaminski; Dong Soon Kim; Yasuhiro Kondoh; David A Lynch; Joachim Müller-Quernheim; Jeffrey L Myers; Andrew G Nicholson; Moisés Selman; Galen B Toews; Athol U Wells; Fernando J Martinez
Journal:  Am J Respir Crit Care Med       Date:  2007-06-21       Impact factor: 21.405

Review 6.  Thy-1, a versatile modulator of signaling affecting cellular adhesion, proliferation, survival, and cytokine/growth factor responses.

Authors:  Tanya A Rege; James S Hagood
Journal:  Biochim Biophys Acta       Date:  2006-08-18

7.  Telomerase mutations in families with idiopathic pulmonary fibrosis.

Authors:  Mary Y Armanios; Julian J-L Chen; Joy D Cogan; Jonathan K Alder; Roxann G Ingersoll; Cheryl Markin; William E Lawson; Mingyi Xie; Irma Vulto; John A Phillips; Peter M Lansdorp; Carol W Greider; James E Loyd
Journal:  N Engl J Med       Date:  2007-03-29       Impact factor: 91.245

8.  Adult-onset pulmonary fibrosis caused by mutations in telomerase.

Authors:  Kalliopi D Tsakiri; Jennifer T Cronkhite; Phillip J Kuan; Chao Xing; Ganesh Raghu; Jonathan C Weissler; Randall L Rosenblatt; Jerry W Shay; Christine Kim Garcia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-25       Impact factor: 11.205

9.  Microarray analysis of microRNA expression in peripheral blood cells of systemic lupus erythematosus patients.

Authors:  Y Dai; Y-S Huang; M Tang; T-Y Lv; C-X Hu; Y-H Tan; Z-M Xu; Y-B Yin
Journal:  Lupus       Date:  2007       Impact factor: 2.911

10.  Accelerated variant of idiopathic pulmonary fibrosis: clinical behavior and gene expression pattern.

Authors:  Moisés Selman; Guillermo Carrillo; Andrea Estrada; Mayra Mejia; Carina Becerril; José Cisneros; Miguel Gaxiola; Rogelio Pérez-Padilla; Carmen Navarro; Thomas Richards; James Dauber; Talmadge E King; Annie Pardo; Naftali Kaminski
Journal:  PLoS One       Date:  2007-05-30       Impact factor: 3.240

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  7 in total

1.  Mouse Models of Lung Fibrosis.

Authors:  Olivia Mekhael; Safaa Naiel; Megan Vierhout; Aaron I Hayat; Spencer D Revill; Soumeya Abed; Mark D Inman; Martin R J Kolb; Kjetil Ask
Journal:  Methods Mol Biol       Date:  2021

2.  The mitochondrial cardiolipin remodeling enzyme lysocardiolipin acyltransferase is a novel target in pulmonary fibrosis.

Authors:  Long Shuang Huang; Biji Mathew; Haiquan Li; Yutong Zhao; Shwu-Fan Ma; Imre Noth; Sekhar P Reddy; Anantha Harijith; Peter V Usatyuk; Evgeny V Berdyshev; Naftali Kaminski; Tong Zhou; Wei Zhang; Yanmin Zhang; Jalees Rehman; Sainath R Kotha; Travis O Gurney; Narasimham L Parinandi; Yves A Lussier; Joe G N Garcia; Viswanathan Natarajan
Journal:  Am J Respir Crit Care Med       Date:  2014-06-01       Impact factor: 21.405

3.  Peripheral blood mononuclear cell gene expression profiles predict poor outcome in idiopathic pulmonary fibrosis.

Authors:  Jose D Herazo-Maya; Imre Noth; Steven R Duncan; Sunghwan Kim; Shwu-Fan Ma; George C Tseng; Eleanor Feingold; Brenda M Juan-Guardela; Thomas J Richards; Yves Lussier; Yong Huang; Rekha Vij; Kathleen O Lindell; Jianmin Xue; Kevin F Gibson; Steven D Shapiro; Joe G N Garcia; Naftali Kaminski
Journal:  Sci Transl Med       Date:  2013-10-02       Impact factor: 17.956

4.  Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic Pulmonary Fibrosis.

Authors:  Milica Vukmirovic; Jose D Herazo-Maya; John Blackmon; Vesna Skodric-Trifunovic; Dragana Jovanovic; Sonja Pavlovic; Jelena Stojsic; Vesna Zeljkovic; Xiting Yan; Robert Homer; Branko Stefanovic; Naftali Kaminski
Journal:  BMC Pulm Med       Date:  2017-01-12       Impact factor: 3.317

5.  Proteome Investigation of Rat Lungs subjected to Ex Vivo Perfusion (EVLP).

Authors:  Valentina Roffia; Antonella De Palma; Caterina Lonati; Dario Di Silvestre; Rossana Rossi; Marco Mantero; Stefano Gatti; Daniele Dondossola; Franco Valenza; Pierluigi Mauri; Francesco Blasi
Journal:  Molecules       Date:  2018-11-22       Impact factor: 4.411

Review 6.  Molecular biomarkers in interstitial lung diseases.

Authors:  Angelo De Lauretis; Elisabetta A Renzoni
Journal:  Mol Diagn Ther       Date:  2014-10       Impact factor: 4.074

7.  Genome sequencing of idiopathic pulmonary fibrosis in conjunction with a medical school human anatomy course.

Authors:  Akash Kumar; Max Dougherty; Gregory M Findlay; Madeleine Geisheker; Jason Klein; John Lazar; Heather Machkovech; Jesse Resnick; Rebecca Resnick; Alexander I Salter; Faezeh Talebi-Liasi; Christopher Arakawa; Jacob Baudin; Andrew Bogaard; Rebecca Salesky; Qian Zhou; Kelly Smith; John I Clark; Jay Shendure; Marshall S Horwitz
Journal:  PLoS One       Date:  2014-09-05       Impact factor: 3.240

  7 in total

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