Literature DB >> 22912485

Single-stranded microRNA mimics.

Guillaume Chorn1, Molly Klein-McDowell, Lihong Zhao, Matthew A Saunders, W Michael Flanagan, Aarron T Willingham, Lee P Lim.   

Abstract

miRNAs are ∼22-nt RNAs that bind to the Argonaute family of proteins and have important regulatory roles in plants and animals. Here, we show that miRNAs exhibit targeting activity in cells when delivered as single strands that are 5'-phosphorylated and that contain 2'-fluoro ribose modifications. Length preferences, chemical modification sensitivity, and genome-wide seed-based targeting all suggest that this activity is Ago-based. Activity could be enhanced by annealing of segmented passenger strands containing non-nucleic acid spacers. Furthermore, screening of randomly generated sequences identified pyrimidine rich 3' cassette sequences that increased single strand activity. These results provide an initial step in the development of single-stranded miRNA mimics for therapeutic use.

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Year:  2012        PMID: 22912485      PMCID: PMC3446704          DOI: 10.1261/rna.031278.111

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  18 in total

1.  WebLogo: a sequence logo generator.

Authors:  Gavin E Crooks; Gary Hon; John-Marc Chandonia; Steven E Brenner
Journal:  Genome Res       Date:  2004-06       Impact factor: 9.043

2.  Persistence of seed-based activity following segmentation of a microRNA guide strand.

Authors:  Guillaume Chorn; Lihong Zhao; Alan B Sachs; W Michael Flanagan; Lee P Lim
Journal:  RNA       Date:  2010-10-22       Impact factor: 4.942

Review 3.  Chemical modification of small interfering RNA.

Authors:  Jesper B Bramsen; Jørgen Kjems
Journal:  Methods Mol Biol       Date:  2011

4.  Evidence that siRNAs function as guides, not primers, in the Drosophila and human RNAi pathways.

Authors:  Dianne S Schwarz; György Hutvágner; Benjamin Haley; Phillip D Zamore
Journal:  Mol Cell       Date:  2002-09       Impact factor: 17.970

5.  Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.

Authors:  S M Elbashir; J Harborth; W Lendeckel; A Yalcin; K Weber; T Tuschl
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

6.  An HNF4α-miRNA inflammatory feedback circuit regulates hepatocellular oncogenesis.

Authors:  Maria Hatziapostolou; Christos Polytarchou; Eleni Aggelidou; Alexandra Drakaki; George A Poultsides; Savina A Jaeger; Hisanobu Ogata; Michael Karin; Kevin Struhl; Margarita Hadzopoulou-Cladaras; Dimitrios Iliopoulos
Journal:  Cell       Date:  2011-12-09       Impact factor: 41.582

7.  Mipomersen, an apolipoprotein B synthesis inhibitor, for lowering of LDL cholesterol concentrations in patients with homozygous familial hypercholesterolaemia: a randomised, double-blind, placebo-controlled trial.

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Journal:  Lancet       Date:  2010-03-20       Impact factor: 79.321

Review 8.  MicroRNA replacement therapy for cancer.

Authors:  Jon C Henry; Ana Clara P Azevedo-Pouly; Thomas D Schmittgen
Journal:  Pharm Res       Date:  2011-08-31       Impact factor: 4.200

9.  Single-stranded antisense siRNAs guide target RNA cleavage in RNAi.

Authors:  Javier Martinez; Agnieszka Patkaniowska; Henning Urlaub; Reinhard Lührmann; Thomas Tuschl
Journal:  Cell       Date:  2002-09-06       Impact factor: 41.582

10.  mRNA knockdown by single strand RNA is improved by chemical modifications.

Authors:  Henry J Haringsma; Jenny J Li; Ferdie Soriano; Denise M Kenski; W Michael Flanagan; Aarron T Willingham
Journal:  Nucleic Acids Res       Date:  2012-01-16       Impact factor: 16.971

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  24 in total

1.  Passenger strand loading in overexpression experiments using microRNA mimics.

Authors:  Rolf Søkilde; Inga Newie; Helena Persson; Åke Borg; Carlos Rovira
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

2.  Duplex RNAs and ss-siRNAs Block RNA Foci Associated with Fuchs' Endothelial Corneal Dystrophy.

Authors:  Jiaxin Hu; Xiulong Shen; Frank Rigo; Thahza P Prakash; V Vinod Mootha; David R Corey
Journal:  Nucleic Acid Ther       Date:  2019-01-24       Impact factor: 5.486

3.  Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals.

Authors:  Katsutomo Okamura; Erik Ladewig; Li Zhou; Eric C Lai
Journal:  Genes Dev       Date:  2013-03-27       Impact factor: 11.361

4.  Development of Novel Small Hairpin RNAs That do not Require Processing by Dicer or AGO2.

Authors:  Shin-Ichiro Ohno; Karen Itano; Yuichirou Harada; Koutaro Asada; Keiki Oikawa; Mikie Kashiwazako; Hikaru Okuyama; Katsuyoshi Kumagai; Masakatsu Takanashi; Katsuko Sudo; Norihiko Ikeda; Masahiko Kuroda
Journal:  Mol Ther       Date:  2016-04-25       Impact factor: 11.454

5.  Recognition of c9orf72 Mutant RNA by Single-Stranded Silencing RNAs.

Authors:  Jiaxin Hu; Frank Rigo; Thazha P Prakash; David R Corey
Journal:  Nucleic Acid Ther       Date:  2016-12-22       Impact factor: 5.486

6.  Tumor necrosis factor alpha delivers exogenous inflammation-related microRNAs to recipient cells with functional targeting capabilities.

Authors:  Yuechao Zhao; Tan Zhang; Xuelian Shen; Aixue Huang; Hui Li; Lin Wang; Xuemei Liu; Xuejun Wang; Xiang Song; Shengqi Wang; Jie Dong; Ningsheng Shao
Journal:  Mol Ther       Date:  2022-07-05       Impact factor: 12.910

Review 7.  Modulation of immune responses following solid organ transplantation by microRNA.

Authors:  Nayan J Sarma; Venkataswarup Tiriveedhi; Sabarinathan Ramachandran; Jeffrey Crippin; William Chapman; T Mohanakumar
Journal:  Exp Mol Pathol       Date:  2012-10-01       Impact factor: 3.362

8.  Tumor-Derived Exosomes Enriched by miRNA-124 Promote Anti-tumor Immune Response in CT-26 Tumor-Bearing Mice.

Authors:  Ramazan Rezaei; Kaveh Baghaei; Seyed Mahmoud Hashemi; Mohammad Reza Zali; Hossein Ghanbarian; Davar Amani
Journal:  Front Med (Lausanne)       Date:  2021-04-27

9.  Loop-miRs: active microRNAs generated from single-stranded loop regions.

Authors:  Julia Winter; Steffen Link; Dominik Witzigmann; Catherina Hildenbrand; Christopher Previti; Sven Diederichs
Journal:  Nucleic Acids Res       Date:  2013-04-10       Impact factor: 16.971

10.  MicroRNAs as Molecular Targets for Cancer Therapy: On the Modulation of MicroRNA Expression.

Authors:  Pedro M Costa; Maria C Pedroso de Lima
Journal:  Pharmaceuticals (Basel)       Date:  2013-09-30
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