Literature DB >> 22907495

Methylated DNA immunoprecipitation (MeDIP) from low amounts of cells.

Julie Borgel1, Sylvain Guibert, Michael Weber.   

Abstract

Methylated DNA immunoprecipitation (MeDIP) is an immunocapturing approach for unbiased enrichment of DNA that is methylated on cytosines. The principle is that genomic DNA is randomly sheared by sonication and immunoprecipitated with an antibody that specifically recognizes 5-methylcytidine (5mC), which can be combined with PCR or high-throughput analysis (microarrays, deep sequencing). The MeDIP technique has been originally used to generate DNA methylation profiles on a genome scale in mammals and plants. Here we provide an optimized version of the MeDIP protocol suitable for low amounts of DNA, which can be used to study DNA methylation in cellular populations available in small quantities.

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Year:  2012        PMID: 22907495     DOI: 10.1007/978-1-62703-011-3_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  10 in total

Review 1.  Why methylation is not a marker predictive of response to hypomethylating agents.

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Journal:  Haematologica       Date:  2014-04       Impact factor: 9.941

2.  High-Fidelity CRISPR/Cas9-Based Gene-Specific Hydroxymethylation.

Authors:  Xingbo Xu; Elisabeth M Zeisberg
Journal:  Methods Mol Biol       Date:  2021

3.  Ethnicity-specific and overlapping alterations of brain hydroxymethylome in Alzheimer's disease.

Authors:  Lixia Qin; Qian Xu; Ziyi Li; Li Chen; Yujing Li; Nannan Yang; Zhenhua Liu; Jifeng Guo; Lu Shen; Emily G Allen; Chao Chen; Chao Ma; Hao Wu; Xiongwei Zhu; Peng Jin; Beisha Tang
Journal:  Hum Mol Genet       Date:  2020-01-01       Impact factor: 6.150

4.  Label free detection of 5'hydroxymethylcytosine within CpG islands using optical sensors.

Authors:  Rasheeda M Hawk; Andrea M Armani
Journal:  Biosens Bioelectron       Date:  2014-10-23       Impact factor: 10.618

5.  MeDIP combined with in-solution targeted enrichment followed by NGS: Inter-individual methylation variability of fetal-specific biomarkers and their implementation in a proof of concept study for NIPT.

Authors:  Anna Keravnou; Marios Ioannides; Charalambos Loizides; Kyriakos Tsangaras; Achilleas Achilleos; Petros Mina; Elena Kypri; Michael D Hadjidaniel; Maria Neofytou; Skevi Kyriacou; Carolina Sismani; George Koumbaris; Philippos C Patsalis
Journal:  PLoS One       Date:  2018-06-11       Impact factor: 3.240

6.  Whole-genome fetal and maternal DNA methylation analysis using MeDIP-NGS for the identification of differentially methylated regions.

Authors:  Anna Keravnou; Marios Ioannides; Kyriakos Tsangaras; Charalambos Loizides; Michael D Hadjidaniel; Elisavet A Papageorgiou; Skevi Kyriakou; Pavlos Antoniou; Petros Mina; Achilleas Achilleos; Maria Neofytou; Elena Kypri; Carolina Sismani; George Koumbaris; Philippos C Patsalis
Journal:  Genet Res (Camb)       Date:  2016-11-11       Impact factor: 1.588

7.  An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform.

Authors:  Francesco Marabita; Malin Almgren; Maléne E Lindholm; Sabrina Ruhrmann; Fredrik Fagerström-Billai; Maja Jagodic; Carl J Sundberg; Tomas J Ekström; Andrew E Teschendorff; Jesper Tegnér; David Gomez-Cabrero
Journal:  Epigenetics       Date:  2013-02-19       Impact factor: 4.528

8.  Potential roles of microRNA-29a in the molecular pathophysiology of T-cell acute lymphoblastic leukemia.

Authors:  Lucila H Oliveira; Josiane L Schiavinato; Mariane S Fráguas; Antonio R Lucena-Araujo; Rodrigo Haddad; Amélia G Araújo; Leandro F Dalmazzo; Eduardo M Rego; Dimas T Covas; Marco A Zago; Rodrigo A Panepucci
Journal:  Cancer Sci       Date:  2015-09-21       Impact factor: 6.716

9.  The Epigenome View: An Effort towards Non-Invasive Prenatal Diagnosis.

Authors:  Elisavet A Papageorgiou; George Koumbaris; Elena Kypri; Michael Hadjidaniel; Philippos C Patsalis
Journal:  Genes (Basel)       Date:  2014-04-09       Impact factor: 4.096

10.  Development of a new methylation-based fetal fraction estimation assay using multiplex ddPCR.

Authors:  Marios Ioannides; Achilleas Achilleos; Skevi Kyriakou; Elena Kypri; Charalambos Loizides; Kyriakos Tsangaras; Louiza Constantinou; George Koumbaris; Philippos C Patsalis
Journal:  Mol Genet Genomic Med       Date:  2019-12-10       Impact factor: 2.183

  10 in total

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