Literature DB >> 22906839

Epigenetics: the link between nature and nurture.

Stephanie A Tammen1, Simonetta Friso, Sang-Woon Choi.   

Abstract

While the eukaryotic genome is the same throughout all somatic cells in an organism, there are specific structures and functions that discern one type of cell from another. These differences are due to the cell's unique gene expression patterns that are determined during cellular differentiation. Interestingly, these cell-specific gene expression patterns can be affected by an organism's environment throughout its lifetime leading to phenotypical changes that have the potential of altering risk of some diseases. Both cell-specific gene expression signatures and environment mediated changes in expression patterns can be explained by a complex network of modifications to the DNA, histone proteins and degree of DNA packaging called epigenetic marks. Several areas of research have formed to study these epigenetic modifications, including DNA methylation, histone modifications, chromatin remodeling and microRNA (miRNA). The original definition of epigenetics incorporates inheritable but reversible phenomena that affect gene expression without altering base pairs. Even though not all of the above listed epigenetic traits have demonstrated heritability, they can all alter gene transcription without modification to the underlying genetic sequence. Because these epigenetic patterns can also be affected by an organism's environment, they serve as an important bridge between life experiences and phenotypes. Epigenetic patterns may change throughout one's lifespan, by an early life experience, environmental exposure or nutritional status. Epigenetic signatures influenced by the environment may determine our appearance, behavior, stress response, disease susceptibility, and even longevity. The interaction between types of epigenetic modifications in response to environmental factors and how environmental cues affect epigenetic patterns will further elucidate how gene transcription can be affectively altered.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22906839      PMCID: PMC3515707          DOI: 10.1016/j.mam.2012.07.018

Source DB:  PubMed          Journal:  Mol Aspects Med        ISSN: 0098-2997


  107 in total

1.  Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA.

Authors:  Lin Zhang; Dongxia Hou; Xi Chen; Donghai Li; Lingyun Zhu; Yujing Zhang; Jing Li; Zhen Bian; Xiangying Liang; Xing Cai; Yuan Yin; Cheng Wang; Tianfu Zhang; Dihan Zhu; Dianmu Zhang; Jie Xu; Qun Chen; Yi Ba; Jing Liu; Qiang Wang; Jianqun Chen; Jin Wang; Meng Wang; Qipeng Zhang; Junfeng Zhang; Ke Zen; Chen-Yu Zhang
Journal:  Cell Res       Date:  2011-09-20       Impact factor: 25.617

2.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

3.  Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.

Authors:  Robert J Sims; Scott Millhouse; Chi-Fu Chen; Brian A Lewis; Hediye Erdjument-Bromage; Paul Tempst; James L Manley; Danny Reinberg
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

Review 4.  Functions of site-specific histone acetylation and deacetylation.

Authors:  Mona D Shahbazian; Michael Grunstein
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

5.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

6.  Evidence for non-CpG methylation in mammals.

Authors:  Jie Yan; Juleen R Zierath; Romain Barrès
Journal:  Exp Cell Res       Date:  2011-09-07       Impact factor: 3.905

7.  Diet, methyl donors and DNA methylation: interactions between dietary folate, methionine and choline.

Authors:  Mihai D Niculescu; Steven H Zeisel
Journal:  J Nutr       Date:  2002-08       Impact factor: 4.798

8.  Postsynthetic trimethylation of histone H4 at lysine 20 in mammalian tissues is associated with aging.

Authors:  Bettina Sarg; Elisavet Koutzamani; Wilfried Helliger; Ingemar Rundquist; Herbert H Lindner
Journal:  J Biol Chem       Date:  2002-08-01       Impact factor: 5.157

Review 9.  Structure and function of SWI/SNF chromatin remodeling complexes and mechanistic implications for transcription.

Authors:  Liling Tang; Eva Nogales; Claudio Ciferri
Journal:  Prog Biophys Mol Biol       Date:  2010-05-20       Impact factor: 3.667

10.  Effects of green tea polyphenol on methylation status of RECK gene and cancer cell invasion in oral squamous cell carcinoma cells.

Authors:  K Kato; N K Long; H Makita; M Toida; T Yamashita; D Hatakeyama; A Hara; H Mori; T Shibata
Journal:  Br J Cancer       Date:  2008-07-29       Impact factor: 7.640

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  98 in total

1.  Considerations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies.

Authors:  Paul Yousefi; Karen Huen; Raul Aguilar Schall; Anna Decker; Emon Elboudwarej; Hong Quach; Lisa Barcellos; Nina Holland
Journal:  Epigenetics       Date:  2013-08-19       Impact factor: 4.528

2.  [Genetics of atopic eczema. An update].

Authors:  E Rodríguez; S Weidinger
Journal:  Hautarzt       Date:  2015-02       Impact factor: 0.751

3.  DNA methylation, colon cancer and Mediterranean diet: results from the EPIC-Italy cohort.

Authors:  Francesca Fasanelli; Maria Teresa Giraudo; Paolo Vineis; Valentina Fiano; Giovanni Fiorito; Chiara Grasso; Silvia Polidoro; Morena Trevisan; Sara Grioni; Vittorio Krogh; Amalia Mattiello; Salvatore Panico; Maria Concetta Giurdanella; Rosario Tumino; Laura De Marco; Fulvio Ricceri; Carlotta Sacerdote
Journal:  Epigenetics       Date:  2019-06-14       Impact factor: 4.528

Review 4.  Epigenetic modulation during hippocampal development.

Authors:  Si-Jing Fan; An-Bang Sun; Lian Liu
Journal:  Biomed Rep       Date:  2018-10-18

Review 5.  Effects of prenatal exposure to endocrine disruptors and toxic metals on the fetal epigenome.

Authors:  Paige A Bommarito; Elizabeth Martin; Rebecca C Fry
Journal:  Epigenomics       Date:  2017-02-17       Impact factor: 4.778

Review 6.  DNA methylation-based variation between human populations.

Authors:  Farzeen Kader; Meenu Ghai
Journal:  Mol Genet Genomics       Date:  2016-11-04       Impact factor: 3.291

7.  Adherence to Mediterranean diet is associated with methylation changes in inflammation-related genes in peripheral blood cells.

Authors:  A Arpón; J I Riezu-Boj; F I Milagro; A Marti; C Razquin; M A Martínez-González; D Corella; R Estruch; R Casas; M Fitó; E Ros; J Salas-Salvadó; J A Martínez
Journal:  J Physiol Biochem       Date:  2017-02-08       Impact factor: 4.158

Review 8.  Pesticides as the drivers of neuropsychotic diseases, cancers, and teratogenicity among agro-workers as well as general public.

Authors:  Seema Patel; Sushree Sangeeta
Journal:  Environ Sci Pollut Res Int       Date:  2018-11-08       Impact factor: 4.223

Review 9.  Epigenetics Variation and Pathogenesis in Diabetes.

Authors:  Haichen Zhang; Toni I Pollin
Journal:  Curr Diab Rep       Date:  2018-10-02       Impact factor: 4.810

Review 10.  Epigenetic mechanisms and models in the origins of asthma.

Authors:  Wilfried Karmaus; Ali H Ziyab; Todd Everson; John W Holloway
Journal:  Curr Opin Allergy Clin Immunol       Date:  2013-02
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