Literature DB >> 22906809

Current relaxation of selection on the human genome: tolerance of deleterious mutations on olfactory receptors.

Denis Pierron1, Nicolás Gutiérrez Cortés, Thierry Letellier, Lawrence I Grossman.   

Abstract

Knowledge and understanding about the selective pressures that have shaped present human genetic diversity have dramatically increased in the last few years in parallel with the availability of large genomic datasets. The release of large datasets composed of millions of SNPs across hundreds of genomes by HAPMAP, the Human Genome Diversity Panel, and other projects has led to considerable effort to detect selection signals across the nuclear genome (Coop et al., 2009; Lopez Herraez et al., 2009; Sabeti et al., 2006, 2007; Voight et al., 2006). Most of the research has focused on positive selection forces although other selective forces, such as negative selection, may have played a substantive role on the shape of our genome. Here we studied the selective strengths acting presently on the genome by making computational predictions of the pathogenicity of nonsynonymous protein mutations and interpreting the distribution of scores in terms of selection. We could show that the genetic diversity for all the major pathways is still constrained by negative selection in all 11 human populations studied. In a single exception, we observed a relaxation of negative selection acting on olfactory receptors. Since a decreased number of functioning olfactory receptors in human compared with other primates had already been shown, this suggests that the role of olfactory receptors for survival and reproductive success has decreased during human evolution. By showing that negative selection is still relaxed, the present results imply that no plateau of minimal function has yet been reached in modern humans and therefore that olfactory capability might still be decreasing. This is a first clue to present human evolution.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22906809     DOI: 10.1016/j.ympev.2012.07.032

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  10 in total

1.  Human testis-specific genes are under relaxed negative selection.

Authors:  Denis Pierron; Harilanto Razafindrazaka; Christophe Rocher; Thierry Letellier; Lawrence I Grossman
Journal:  Mol Genet Genomics       Date:  2013-11-08       Impact factor: 3.291

Review 2.  The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives.

Authors:  Yuval B Simons; Guy Sella
Journal:  Curr Opin Genet Dev       Date:  2016-10-13       Impact factor: 5.578

3.  Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes.

Authors:  Antonio Rausell; Yufei Luo; Marie Lopez; Yoann Seeleuthner; Franck Rapaport; Antoine Favier; Peter D Stenson; David N Cooper; Etienne Patin; Jean-Laurent Casanova; Lluis Quintana-Murci; Laurent Abel
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-02       Impact factor: 11.205

4.  Contiguously hydrophobic sequences are functionally significant throughout the human exome.

Authors:  Ruchi Lohia; Matthew E B Hansen; Grace Brannigan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-16       Impact factor: 12.779

5.  A scan for human-specific relaxation of negative selection reveals unexpected polymorphism in proteasome genes.

Authors:  Mehmet Somel; Melissa A Wilson Sayres; Gregory Jordan; Emilia Huerta-Sanchez; Matteo Fumagalli; Anna Ferrer-Admetlla; Rasmus Nielsen
Journal:  Mol Biol Evol       Date:  2013-05-22       Impact factor: 16.240

6.  Purifying selection shapes the coincident SNP distribution of primate coding sequences.

Authors:  Chia-Ying Chen; Li-Yuan Hung; Chan-Shuo Wu; Trees-Juen Chuang
Journal:  Sci Rep       Date:  2016-06-03       Impact factor: 4.379

7.  Investigating the effects of copy number variants on reading and language performance.

Authors:  Alessandro Gialluisi; Alessia Visconti; Erik G Willcutt; Shelley D Smith; Bruce F Pennington; Mario Falchi; John C DeFries; Richard K Olson; Clyde Francks; Simon E Fisher
Journal:  J Neurodev Disord       Date:  2016-05-15       Impact factor: 4.025

8.  Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain.

Authors:  Daniel R Schrider; Andrew D Kern
Journal:  Genome Biol Evol       Date:  2015-11-19       Impact factor: 3.416

9.  Genetic variants affecting equivalent protein family positions reflect human diversity.

Authors:  Francesco Raimondi; Matthew J Betts; Qianhao Lu; Asuka Inoue; J Silvio Gutkind; Robert B Russell
Journal:  Sci Rep       Date:  2017-10-06       Impact factor: 4.379

10.  The Evolution of the Mammalian ABCA6-like Genes: Analysis of Phylogenetic, Expression, and Population Genetic Data Reveals Complex Evolutionary Histories.

Authors:  Martin W Breuss; Allen Mamerto; Tanya Renner; Elizabeth R Waters
Journal:  Genome Biol Evol       Date:  2020-11-03       Impact factor: 3.416

  10 in total

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