| Literature DB >> 22904990 |
Abstract
The crystal structure of the title compound, C(3)H(4)N(4)O(2)·H(2)O, exhibits O-H⋯O and O-H⋯N hydrogen bonds, which lead to the formation of a two-dimensional network parallel to the bc plane. The dihedral angle between the ring and the carboxylic acid group is 84.6 (14)°.Entities:
Year: 2012 PMID: 22904990 PMCID: PMC3415003 DOI: 10.1107/S1600536812033090
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H4N4O2·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 6216 reflections |
| θ = 3.2–27.5° | |
| µ = 0.13 mm−1 | |
| Needle, pale yellow | |
| 0.26 × 0.23 × 0.19 mm |
| Rigaku SCXmini diffractometer | 786 independent reflections |
| Radiation source: fine-focus sealed tube | 715 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 27.5°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 6216 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 786 reflections | (Δ/σ)max < 0.001 |
| 103 parameters | Δρmax = 0.11 e Å−3 |
| 1 restraint | Δρmin = −0.12 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.38513 (14) | 0.5364 (3) | 1.01953 (17) | 0.0450 (4) | |
| O2 | 0.30421 (14) | 0.8326 (3) | 0.89450 (17) | 0.0525 (5) | |
| N2 | 0.37640 (16) | 0.8301 (4) | 0.4743 (2) | 0.0436 (5) | |
| C5 | 0.36860 (19) | 0.6540 (4) | 0.5678 (2) | 0.0381 (5) | |
| H5A | 0.3281 | 0.5047 | 0.5614 | 0.046* | |
| N4 | 0.47431 (18) | 0.9471 (4) | 0.6448 (2) | 0.0497 (5) | |
| C7 | 0.37025 (18) | 0.6679 (4) | 0.9087 (2) | 0.0358 (5) | |
| N1 | 0.44272 (18) | 1.0105 (4) | 0.5252 (2) | 0.0527 (6) | |
| N3 | 0.42748 (14) | 0.7205 (3) | 0.67377 (18) | 0.0334 (4) | |
| C6 | 0.44751 (19) | 0.5888 (4) | 0.8003 (2) | 0.0379 (5) | |
| H6A | 0.5190 | 0.6270 | 0.8302 | 0.046* | |
| H6B | 0.4424 | 0.4042 | 0.7860 | 0.046* | |
| O3 | 0.27445 (17) | 0.7053 (4) | 0.22354 (17) | 0.0509 (5) | |
| H1A | 0.344 (3) | 0.595 (6) | 1.086 (4) | 0.079 (11)* | |
| H3A | 0.246 (2) | 0.600 (6) | 0.263 (4) | 0.062 (10)* | |
| H3B | 0.310 (3) | 0.789 (6) | 0.279 (4) | 0.062 (10)* |
| O1 | 0.0495 (9) | 0.0525 (10) | 0.0330 (9) | 0.0046 (8) | −0.0002 (8) | 0.0146 (8) |
| O2 | 0.0605 (10) | 0.0645 (11) | 0.0327 (9) | 0.0259 (9) | 0.0079 (8) | 0.0131 (9) |
| N2 | 0.0554 (12) | 0.0453 (11) | 0.0303 (9) | −0.0005 (9) | 0.0026 (9) | 0.0036 (9) |
| C5 | 0.0438 (14) | 0.0403 (12) | 0.0303 (11) | −0.0033 (9) | 0.0011 (9) | −0.0052 (9) |
| N4 | 0.0678 (14) | 0.0421 (11) | 0.0393 (11) | −0.0149 (10) | 0.0003 (11) | −0.0023 (9) |
| C7 | 0.0409 (12) | 0.0368 (11) | 0.0298 (11) | −0.0010 (10) | −0.0039 (9) | 0.0036 (10) |
| N1 | 0.0729 (14) | 0.0454 (11) | 0.0396 (12) | −0.0118 (10) | 0.0050 (12) | 0.0042 (10) |
| N3 | 0.0402 (9) | 0.0325 (9) | 0.0276 (8) | 0.0000 (8) | 0.0031 (8) | −0.0036 (7) |
| C6 | 0.0446 (12) | 0.0366 (11) | 0.0326 (11) | 0.0070 (11) | −0.0046 (10) | −0.0011 (9) |
| O3 | 0.0612 (11) | 0.0625 (12) | 0.0289 (9) | −0.0116 (10) | −0.0018 (8) | 0.0107 (9) |
| O1—C7 | 1.303 (3) | N4—N3 | 1.346 (3) |
| O1—H1A | 0.89 (4) | C7—C6 | 1.505 (3) |
| O2—C7 | 1.202 (3) | N3—C6 | 1.446 (3) |
| N2—C5 | 1.303 (3) | C6—H6A | 0.9700 |
| N2—N1 | 1.352 (3) | C6—H6B | 0.9700 |
| C5—N3 | 1.329 (3) | O3—H3A | 0.76 (3) |
| C5—H5A | 0.9300 | O3—H3B | 0.83 (4) |
| N4—N1 | 1.289 (3) | ||
| C7—O1—H1A | 111 (2) | C5—N3—N4 | 107.74 (19) |
| C5—N2—N1 | 105.6 (2) | C5—N3—C6 | 130.92 (19) |
| N2—C5—N3 | 109.49 (19) | N4—N3—C6 | 121.31 (19) |
| N2—C5—H5A | 125.3 | N3—C6—C7 | 111.87 (17) |
| N3—C5—H5A | 125.3 | N3—C6—H6A | 109.2 |
| N1—N4—N3 | 106.37 (19) | C7—C6—H6A | 109.2 |
| O2—C7—O1 | 124.8 (2) | N3—C6—H6B | 109.2 |
| O2—C7—C6 | 124.0 (2) | C7—C6—H6B | 109.2 |
| O1—C7—C6 | 111.19 (19) | H6A—C6—H6B | 107.9 |
| N4—N1—N2 | 110.82 (19) | H3A—O3—H3B | 107 (3) |
| N1—N2—C5—N3 | 0.1 (3) | N1—N4—N3—C6 | 178.50 (19) |
| N3—N4—N1—N2 | −0.3 (3) | C5—N3—C6—C7 | −92.1 (3) |
| C5—N2—N1—N4 | 0.1 (3) | N4—N3—C6—C7 | 90.3 (3) |
| N2—C5—N3—N4 | −0.3 (3) | O2—C7—C6—N3 | −4.4 (3) |
| N2—C5—N3—C6 | −178.2 (2) | O1—C7—C6—N3 | 176.12 (18) |
| N1—N4—N3—C5 | 0.3 (3) |
| H··· | ||||
| O3—H3 | 0.83 (4) | 2.11 (4) | 2.864 (3) | 150 (3) |
| O1—H1 | 0.89 (4) | 1.72 (4) | 2.603 (3) | 175 (4) |
| O3—H3 | 0.76 (3) | 2.00 (3) | 2.752 (3) | 168 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.83 (4) | 2.11 (4) | 2.864 (3) | 150 (3) |
| O1—H1 | 0.89 (4) | 1.72 (4) | 2.603 (3) | 175 (4) |
| O3—H3 | 0.76 (3) | 2.00 (3) | 2.752 (3) | 168 (3) |
Symmetry codes: (i) ; (ii) .