Literature DB >> 22904988

3-(Dihy-droxy-bor-yl)anilinium 6-carb-oxy-pyridine-2-carboxyl-ate.

Chunhua Ge1, Xiangdong Zhang, Rui Zhang, Chenglong Zhang.   

Abstract

In the anion of the title molecular salt, C(6)H(9)BNO(2) (+)·C(7)H(4)NO(4) (-), the dihedral angles between the -COO(2-) and -CO(2)H groups and their attached ring are 4.02 (13) and 21.41 (10)°, respectively. The B atom in the cation adopts a syn-syn geometry and the dihedral angle between the -B(OH)(2) group and its attached ring is 11.06 (5)°. In the crystal, O-H⋯O, N-H⋯O and N-H⋯N hydrogen bonds link the components into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22904988      PMCID: PMC3415001          DOI: 10.1107/S1600536812031790

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Hall (2005 ▶). For related structures, see: Li et al. (1995 ▶); SeethaLekshmi & Pedireddi (2006 ▶); Sokolov & MacGillivray (2006 ▶); Vega et al. (2010 ▶).

Experimental

Crystal data

C6H9BNO2C7H4NO4 M = 304.06 Monoclinic, a = 7.7065 (6) Å b = 14.0473 (10) Å c = 13.0852 (10) Å β = 106.963 (1)° V = 1354.92 (18) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.28 × 0.25 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.958, T max = 0.989 8330 measured reflections 2677 independent reflections 2260 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.102 S = 1.05 2677 reflections 206 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: Mercury (Macrae et al., 2006 ▶), PLATON (Spek, 2009 ▶), SHELXL97 and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812031790/cv5313sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031790/cv5313Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031790/cv5313Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9BNO2+·C7H4NO4F(000) = 632
Mr = 304.06Dx = 1.491 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P2ynCell parameters from 58 reflections
a = 7.7065 (6) Åθ = 2.3–22.7°
b = 14.0473 (10) ŵ = 0.12 mm1
c = 13.0852 (10) ÅT = 293 K
β = 106.963 (1)°Block, colourless
V = 1354.92 (18) Å30.28 × 0.25 × 0.20 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2677 independent reflections
Radiation source: fine-focus sealed tube2260 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −9→8
Tmin = 0.958, Tmax = 0.989k = −17→17
8330 measured reflectionsl = −16→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0541P)2 + 0.416P] where P = (Fo2 + 2Fc2)/3
2677 reflections(Δ/σ)max < 0.001
206 parametersΔρmax = 0.25 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.99515 (15)0.89532 (8)0.27933 (8)0.0301 (3)
B10.1026 (2)0.91402 (12)−0.06619 (13)0.0257 (4)
C11.19186 (19)0.93213 (10)0.45205 (11)0.0227 (3)
C21.1728 (2)1.02978 (11)0.43673 (12)0.0300 (4)
H21.09861.05440.37290.036*
C31.2659 (2)1.08965 (11)0.51780 (14)0.0363 (4)
H31.25341.15530.51010.044*
C41.3776 (2)1.05063 (11)0.61038 (13)0.0319 (4)
H41.44591.08940.66500.038*
C51.38602 (19)0.95208 (10)0.62036 (12)0.0248 (3)
C61.5061 (2)0.90725 (10)0.72088 (12)0.0266 (3)
C71.09722 (19)0.86419 (10)0.36402 (11)0.0233 (3)
C80.57150 (19)0.81556 (10)0.09336 (11)0.0212 (3)
C90.5358 (2)0.76762 (10)0.17760 (12)0.0246 (3)
H90.62740.73500.22740.030*
C100.3611 (2)0.76933 (11)0.18593 (12)0.0280 (3)
H100.33450.73880.24260.034*
C110.2256 (2)0.81672 (11)0.10949 (12)0.0273 (3)
H110.10850.81680.11570.033*
C120.2593 (2)0.86417 (10)0.02364 (12)0.0241 (3)
C130.43773 (19)0.86366 (10)0.01759 (11)0.0230 (3)
H130.46620.8958−0.03760.028*
H1A1.070 (4)0.7337 (19)0.329 (2)0.103 (10)*
N11.29358 (16)0.89300 (8)0.54318 (9)0.0222 (3)
N20.75722 (16)0.81145 (8)0.08587 (10)0.0230 (3)
H2A0.78320.75200.07190.034*
H2B0.83410.83020.14750.034*
H2C0.76730.84970.03370.034*
O11.13249 (15)0.77632 (8)0.38493 (8)0.0309 (3)
O31.46409 (15)0.82127 (8)0.73569 (9)0.0334 (3)
O41.63185 (16)0.95337 (9)0.77863 (10)0.0424 (3)
O50.15502 (15)0.96244 (9)−0.14174 (9)0.0371 (3)
H50.06610.9872−0.18370.056*
O6−0.07164 (14)0.90249 (8)−0.06323 (8)0.0312 (3)
H6−0.14160.9245−0.11780.047*
U11U22U33U12U13U23
O20.0322 (6)0.0294 (6)0.0216 (5)0.0028 (4)−0.0035 (5)0.0030 (4)
B10.0264 (9)0.0232 (8)0.0244 (9)0.0018 (7)0.0023 (7)−0.0019 (6)
C10.0208 (7)0.0259 (7)0.0204 (7)−0.0005 (6)0.0045 (6)0.0007 (6)
C20.0350 (9)0.0271 (8)0.0235 (8)0.0021 (6)0.0016 (7)0.0039 (6)
C30.0485 (10)0.0207 (7)0.0351 (9)0.0004 (7)0.0050 (8)0.0015 (7)
C40.0376 (9)0.0249 (8)0.0277 (8)−0.0041 (7)0.0008 (7)−0.0043 (6)
C50.0222 (7)0.0256 (7)0.0242 (8)−0.0002 (6)0.0030 (6)−0.0014 (6)
C60.0263 (8)0.0265 (8)0.0231 (8)0.0017 (6)0.0014 (6)−0.0030 (6)
C70.0227 (7)0.0261 (7)0.0203 (7)0.0012 (6)0.0050 (6)0.0022 (6)
C80.0190 (7)0.0210 (7)0.0220 (7)−0.0012 (5)0.0033 (5)−0.0029 (5)
C90.0237 (7)0.0250 (7)0.0216 (7)0.0014 (6)0.0012 (6)0.0013 (6)
C100.0287 (8)0.0318 (8)0.0237 (8)−0.0001 (6)0.0080 (6)0.0043 (6)
C110.0201 (7)0.0328 (8)0.0290 (8)0.0016 (6)0.0071 (6)−0.0001 (6)
C120.0237 (8)0.0217 (7)0.0245 (8)0.0009 (6)0.0033 (6)−0.0025 (6)
C130.0247 (8)0.0225 (7)0.0208 (7)−0.0001 (6)0.0051 (6)0.0013 (5)
N10.0193 (6)0.0241 (6)0.0209 (6)−0.0004 (5)0.0024 (5)−0.0007 (5)
N20.0203 (6)0.0241 (6)0.0223 (6)0.0000 (5)0.0026 (5)−0.0001 (5)
O10.0382 (7)0.0241 (5)0.0228 (6)0.0001 (5)−0.0031 (5)0.0002 (4)
O30.0369 (7)0.0280 (6)0.0261 (6)−0.0019 (5)−0.0052 (5)0.0029 (4)
O40.0396 (7)0.0342 (6)0.0369 (7)−0.0055 (5)−0.0145 (5)−0.0009 (5)
O50.0291 (6)0.0446 (7)0.0344 (7)0.0090 (5)0.0042 (5)0.0160 (5)
O60.0234 (6)0.0377 (6)0.0270 (6)0.0021 (5)−0.0010 (4)0.0063 (5)
O2—C71.2367 (17)C8—C131.381 (2)
B1—O51.355 (2)C8—C91.386 (2)
B1—O61.365 (2)C8—N21.4640 (18)
B1—C121.582 (2)C9—C101.382 (2)
C1—N11.3391 (18)C9—H90.9300
C1—C21.388 (2)C10—C111.387 (2)
C1—C71.510 (2)C10—H100.9300
C2—C31.380 (2)C11—C121.394 (2)
C2—H20.9300C11—H110.9300
C3—C41.379 (2)C12—C131.400 (2)
C3—H30.9300C13—H130.9300
C4—C51.390 (2)N2—H2A0.8900
C4—H40.9300N2—H2B0.8900
C5—N11.3403 (19)N2—H2C0.8900
C5—C61.507 (2)O1—H1A0.963 (18)
C6—O41.2260 (19)O5—H50.8200
C6—O31.2796 (19)O6—H60.8200
C7—O11.2763 (18)
O5—B1—O6125.84 (14)C9—C8—N2117.31 (12)
O5—B1—C12116.05 (14)C10—C9—C8118.56 (14)
O6—B1—C12118.08 (13)C10—C9—H9120.7
N1—C1—C2122.97 (13)C8—C9—H9120.7
N1—C1—C7116.54 (12)C9—C10—C11119.81 (14)
C2—C1—C7120.48 (13)C9—C10—H10120.1
C3—C2—C1118.82 (14)C11—C10—H10120.1
C3—C2—H2120.6C10—C11—C12122.15 (14)
C1—C2—H2120.6C10—C11—H11118.9
C4—C3—C2118.99 (14)C12—C11—H11118.9
C4—C3—H3120.5C11—C12—C13117.39 (13)
C2—C3—H3120.5C11—C12—B1121.94 (13)
C3—C4—C5118.59 (14)C13—C12—B1120.64 (13)
C3—C4—H4120.7C8—C13—C12120.12 (13)
C5—C4—H4120.7C8—C13—H13119.9
N1—C5—C4123.08 (14)C12—C13—H13119.9
N1—C5—C6117.05 (13)C1—N1—C5117.46 (12)
C4—C5—C6119.86 (13)C8—N2—H2A109.5
O4—C6—O3126.49 (14)C8—N2—H2B109.5
O4—C6—C5119.39 (14)H2A—N2—H2B109.5
O3—C6—C5114.12 (13)C8—N2—H2C109.5
O2—C7—O1125.03 (14)H2A—N2—H2C109.5
O2—C7—C1119.97 (13)H2B—N2—H2C109.5
O1—C7—C1114.99 (12)C7—O1—H1A114.1 (18)
C13—C8—C9121.94 (13)B1—O5—H5109.5
C13—C8—N2120.73 (13)B1—O6—H6109.5
D—H···AD—HH···AD···AD—H···A
O1—H1A···O3i0.96 (2)1.47 (3)2.429 (2)173 (2)
N2—H2A···O1i0.892.422.808 (2)107
N2—H2A···O3i0.892.422.835 (2)109
N2—H2A···N1i0.892.082.955 (2)169
N2—H2B···O3i0.892.492.835 (2)104
N2—H2B···O20.892.032.907 (2)170
N2—H2C···O6ii0.892.152.947 (2)149
O5—H5···O2iii0.822.042.712 (2)139
O6—H6···O4iv0.821.912.694 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1A⋯O3i 0.96 (2)1.47 (3)2.429 (2)173 (2)
N2—H2A⋯O1i 0.892.422.808 (2)107
N2—H2A⋯O3i 0.892.422.835 (2)109
N2—H2A⋯N1i 0.892.082.955 (2)169
N2—H2B⋯O3i 0.892.492.835 (2)104
N2—H2B⋯O20.892.032.907 (2)170
N2—H2C⋯O6ii 0.892.152.947 (2)149
O5—H5⋯O2iii 0.822.042.712 (2)139
O6—H6⋯O4iv 0.821.912.694 (2)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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4.  Structure validation in chemical crystallography.

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