| Literature DB >> 22904972 |
Jace D Sandifer1, Frank R Fronczek, Steven F Watkins.
Abstract
In the title HBr salt of (S)-homoserine lactone, C(4)H(8)NO(2) (+)·Br(-), the five-membered ring has an envelope conformation, with the -CH(2)- C atom adjacent to the N-substituted C atom at the flap position. The four-atom mean plane (r.m.s. deviation = 0.005 Å) of the envelope forms a dihedral angle of 32.12 (9)° with the three-atom flap plane. The distorted square-pyramidal coordination about the anion involves five surrounding cations, with the square base defined by three N-H⋯Br hydrogen bonds [Br⋯N = 3.3046 (10), 3.3407 (12) and 3.3644 (13) Å] and near-contact with an H atom attached to C [Br⋯C = 3.739 (1) Å]. Another Br⋯C contact of 3.427 (1) Å defines the apex. There is also an N-H⋯O hydrogen bond present linking the cations.Entities:
Year: 2012 PMID: 22904972 PMCID: PMC3414985 DOI: 10.1107/S1600536812032552
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H8NO2+·Br− | |
| Melting point: 514 K | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2320 reflections |
| θ = 2.6–41.2° | |
| µ = 6.35 mm−1 | |
| Prism, colourless | |
| 0.25 × 0.25 × 0.22 mm | |
| Nonius KappaCCD diffractometer | 4072 independent reflections |
| Radiation source: sealed tube | 3915 reflections with |
| Horizonally mounted graphite crystal monochromator | |
| Detector resolution: 9 pixels mm-1 | θmax = 40.8°, θmin = 2.8° |
| CCD rotation images, thick slices scans | |
| Absorption correction: multi-scan ( | |
| 4072 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.68 e Å−3 | |
| 4072 reflections | Δρmin = −0.74 e Å−3 |
| 76 parameters | Extinction correction: |
| 0 restraints | Extinction coefficient: 0.0198 (9) |
| 0 constraints | Absolute structure: Flack (1983) and Hooft |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.030 (7) |
| Secondary atom site location: difference Fourier map |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Br1 | 0.398524 (19) | −0.035758 (13) | −0.012904 (11) | 0.00918 (3) | |
| C1 | 0.73144 (19) | −0.01395 (12) | 0.23546 (12) | 0.00862 (18) | |
| C2 | 0.64286 (18) | 0.13091 (12) | 0.27008 (11) | 0.00776 (17) | |
| H2 | 0.505 | 0.1494 | 0.2246 | 0.009* | |
| C3 | 0.8183 (2) | 0.23236 (13) | 0.22670 (12) | 0.01110 (19) | |
| H3A | 0.9319 | 0.2468 | 0.2891 | 0.013* | |
| H3B | 0.7564 | 0.3254 | 0.2032 | 0.013* | |
| C4 | 0.9071 (3) | 0.15234 (14) | 0.11731 (11) | 0.01289 (19) | |
| H4A | 0.8245 | 0.1772 | 0.0433 | 0.015* | |
| H4B | 1.0626 | 0.1752 | 0.1042 | 0.015* | |
| N1 | 0.5994 (2) | 0.13823 (11) | 0.40235 (9) | 0.00966 (14) | |
| H1A | 0.4755 | 0.0892 | 0.4197 | 0.014* | |
| H1B | 0.5828 | 0.2305 | 0.4249 | 0.014* | |
| H1C | 0.7131 | 0.0994 | 0.4435 | 0.014* | |
| O1 | 0.87958 (17) | 0.00107 (10) | 0.14696 (9) | 0.01107 (15) | |
| O2 | 0.68198 (18) | −0.12734 (10) | 0.27816 (10) | 0.01255 (16) |
| Br1 | 0.00741 (4) | 0.00830 (4) | 0.01182 (4) | −0.00006 (4) | −0.00068 (3) | 0.00165 (3) |
| C1 | 0.0080 (4) | 0.0070 (5) | 0.0109 (4) | −0.0001 (3) | −0.0007 (3) | −0.0011 (3) |
| C2 | 0.0082 (4) | 0.0052 (4) | 0.0099 (4) | 0.0006 (3) | 0.0002 (3) | −0.0001 (3) |
| C3 | 0.0133 (5) | 0.0066 (4) | 0.0134 (5) | −0.0012 (4) | 0.0025 (4) | 0.0011 (3) |
| C4 | 0.0159 (5) | 0.0101 (4) | 0.0126 (4) | −0.0012 (5) | 0.0040 (5) | 0.0010 (3) |
| N1 | 0.0093 (3) | 0.0084 (3) | 0.0112 (4) | −0.0007 (4) | 0.0026 (4) | −0.0013 (3) |
| O1 | 0.0120 (4) | 0.0086 (3) | 0.0126 (3) | 0.0003 (3) | 0.0033 (3) | −0.0017 (3) |
| O2 | 0.0132 (4) | 0.0063 (3) | 0.0181 (4) | −0.0017 (3) | −0.0006 (3) | 0.0009 (3) |
| C1—O2 | 1.2063 (15) | C3—H3B | 0.99 |
| C1—O1 | 1.3427 (16) | C4—O1 | 1.4717 (16) |
| C1—C2 | 1.5179 (17) | C4—H4A | 0.99 |
| C2—N1 | 1.4861 (16) | C4—H4B | 0.99 |
| C2—C3 | 1.5178 (17) | N1—H1A | 0.91 |
| C2—H2 | 1 | N1—H1B | 0.91 |
| C3—C4 | 1.5244 (18) | N1—H1C | 0.91 |
| C3—H3A | 0.99 | ||
| O2—C1—O1 | 123.25 (12) | C4—C3—H3B | 111.6 |
| O2—C1—C2 | 127.40 (12) | H3A—C3—H3B | 109.4 |
| O1—C1—C2 | 109.35 (10) | O1—C4—C3 | 105.16 (10) |
| O2—C1—Br1 | 96.27 (8) | O1—C4—H4A | 110.7 |
| O1—C1—Br1 | 80.12 (7) | C3—C4—H4A | 110.7 |
| C2—C1—Br1 | 92.37 (7) | O1—C4—H4B | 110.7 |
| N1—C2—C1 | 110.70 (10) | C3—C4—H4B | 110.7 |
| N1—C2—C3 | 114.11 (10) | H4A—C4—H4B | 108.8 |
| C1—C2—C3 | 103.42 (10) | C2—N1—H1A | 109.5 |
| N1—C2—H2 | 109.5 | C2—N1—H1B | 109.5 |
| C1—C2—H2 | 109.5 | H1A—N1—H1B | 109.5 |
| C3—C2—H2 | 109.5 | C2—N1—H1C | 109.5 |
| C2—C3—C4 | 101.11 (10) | H1A—N1—H1C | 109.5 |
| C2—C3—H3A | 111.6 | H1B—N1—H1C | 109.5 |
| C4—C3—H3A | 111.6 | C1—O1—C4 | 109.98 (10) |
| C2—C3—H3B | 111.6 | ||
| O2—C1—C2—N1 | 35.80 (17) | C1—C2—C3—C4 | 31.16 (13) |
| O1—C1—C2—N1 | −144.09 (10) | C2—C3—C4—O1 | −31.04 (14) |
| Br1—C1—C2—N1 | 135.54 (8) | O2—C1—O1—C4 | −178.50 (13) |
| O2—C1—C2—C3 | 158.41 (13) | C2—C1—O1—C4 | 1.40 (14) |
| O1—C1—C2—C3 | −21.48 (13) | Br1—C1—O1—C4 | 90.45 (9) |
| Br1—C1—C2—C3 | −101.84 (8) | C3—C4—O1—C1 | 19.30 (15) |
| N1—C2—C3—C4 | 151.48 (11) |
| H··· | ||||
| N1—H1 | 0.91 | 2.47 | 3.3407 (12) | 161 |
| N1—H1 | 0.91 | 2.41 | 3.3046 (10) | 168 |
| N1—H1 | 0.91 | 2.51 | 3.3644 (13) | 157 |
| N1—H1 | 0.91 | 2.5 | 3.0050 (14) | 115 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.91 | 2.47 | 3.3407 (12) | 161 |
| N1—H1 | 0.91 | 2.41 | 3.3046 (10) | 168 |
| N1—H1 | 0.91 | 2.51 | 3.3644 (13) | 157 |
| N1—H1 | 0.91 | 2.5 | 3.0050 (14) | 115 |
Symmetry codes: (i) ; (ii) ; (iii) .