Literature DB >> 22904972

(S)-2-Oxotetra-hydro-furan-3-aminium bromide.

Jace D Sandifer1, Frank R Fronczek, Steven F Watkins.   

Abstract

In the title HBr salt of (S)-homoserine lactone, C(4)H(8)NO(2) (+)·Br(-), the five-membered ring has an envelope conformation, with the -CH(2)- C atom adjacent to the N-substituted C atom at the flap position. The four-atom mean plane (r.m.s. deviation = 0.005 Å) of the envelope forms a dihedral angle of 32.12 (9)° with the three-atom flap plane. The distorted square-pyramidal coordination about the anion involves five surrounding cations, with the square base defined by three N-H⋯Br hydrogen bonds [Br⋯N = 3.3046 (10), 3.3407 (12) and 3.3644 (13) Å] and near-contact with an H atom attached to C [BrC = 3.739 (1) Å]. Another BrC contact of 3.427 (1) Å defines the apex. There is also an N-H⋯O hydrogen bond present linking the cations.

Entities:  

Year:  2012        PMID: 22904972      PMCID: PMC3414985          DOI: 10.1107/S1600536812032552

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see: Bocelli & Grenier-Loustalot (1981 ▶); Papaioannou et al. (1990 ▶). For the synthesis of the title compound, see: Armstrong (1948 ▶); Cowell (1996 ▶). For the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C4H8NO2Br M = 182.02 Orthorhombic, a = 6.1425 (1) Å b = 9.4196 (2) Å c = 11.0394 (3) Å V = 638.74 (2) Å3 Z = 4 Mo Kα radiation μ = 6.35 mm−1 T = 90 K 0.25 × 0.25 × 0.22 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.300, T max = 0.336 4072 measured reflections 4072 independent reflections 3915 reflections with I > 2σ(I) R int = 0

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.049 S = 1.07 4072 reflections 76 parameters H-atom parameters constrained Δρmax = 0.68 e Å−3 Δρmin = −0.74 e Å−3 Absolute structure: Flack (1983 ▶) and Hooft et al. (2008 ▶), with 1724 Friedel pairs Flack parameter: 0.030 (7) Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: IDEAL (Gould et al., 1988 ▶) and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812032552/zq2176sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032552/zq2176Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812032552/zq2176Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H8NO2+·BrDx = 1.893 Mg m3
Mr = 182.02Melting point: 514 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2320 reflections
a = 6.1425 (1) Åθ = 2.6–41.2°
b = 9.4196 (2) ŵ = 6.35 mm1
c = 11.0394 (3) ÅT = 90 K
V = 638.74 (2) Å3Prism, colourless
Z = 40.25 × 0.25 × 0.22 mm
F(000) = 360
Nonius KappaCCD diffractometer4072 independent reflections
Radiation source: sealed tube3915 reflections with I > 2σ(I)
Horizonally mounted graphite crystal monochromatorRint = 0
Detector resolution: 9 pixels mm-1θmax = 40.8°, θmin = 2.8°
CCD rotation images, thick slices scansh = −11→11
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997)k = −16→17
Tmin = 0.300, Tmax = 0.336l = −20→20
4072 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.022w = 1/[σ2(Fo2) + (0.0124P)2 + 0.6239P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.049(Δ/σ)max = 0.001
S = 1.07Δρmax = 0.68 e Å3
4072 reflectionsΔρmin = −0.74 e Å3
76 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0198 (9)
0 constraintsAbsolute structure: Flack (1983) and Hooft et al. (2008), with 1724 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.030 (7)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br10.398524 (19)−0.035758 (13)−0.012904 (11)0.00918 (3)
C10.73144 (19)−0.01395 (12)0.23546 (12)0.00862 (18)
C20.64286 (18)0.13091 (12)0.27008 (11)0.00776 (17)
H20.5050.14940.22460.009*
C30.8183 (2)0.23236 (13)0.22670 (12)0.01110 (19)
H3A0.93190.24680.28910.013*
H3B0.75640.32540.20320.013*
C40.9071 (3)0.15234 (14)0.11731 (11)0.01289 (19)
H4A0.82450.17720.04330.015*
H4B1.06260.17520.10420.015*
N10.5994 (2)0.13823 (11)0.40235 (9)0.00966 (14)
H1A0.47550.08920.41970.014*
H1B0.58280.23050.42490.014*
H1C0.71310.09940.44350.014*
O10.87958 (17)0.00107 (10)0.14696 (9)0.01107 (15)
O20.68198 (18)−0.12734 (10)0.27816 (10)0.01255 (16)
U11U22U33U12U13U23
Br10.00741 (4)0.00830 (4)0.01182 (4)−0.00006 (4)−0.00068 (3)0.00165 (3)
C10.0080 (4)0.0070 (5)0.0109 (4)−0.0001 (3)−0.0007 (3)−0.0011 (3)
C20.0082 (4)0.0052 (4)0.0099 (4)0.0006 (3)0.0002 (3)−0.0001 (3)
C30.0133 (5)0.0066 (4)0.0134 (5)−0.0012 (4)0.0025 (4)0.0011 (3)
C40.0159 (5)0.0101 (4)0.0126 (4)−0.0012 (5)0.0040 (5)0.0010 (3)
N10.0093 (3)0.0084 (3)0.0112 (4)−0.0007 (4)0.0026 (4)−0.0013 (3)
O10.0120 (4)0.0086 (3)0.0126 (3)0.0003 (3)0.0033 (3)−0.0017 (3)
O20.0132 (4)0.0063 (3)0.0181 (4)−0.0017 (3)−0.0006 (3)0.0009 (3)
C1—O21.2063 (15)C3—H3B0.99
C1—O11.3427 (16)C4—O11.4717 (16)
C1—C21.5179 (17)C4—H4A0.99
C2—N11.4861 (16)C4—H4B0.99
C2—C31.5178 (17)N1—H1A0.91
C2—H21N1—H1B0.91
C3—C41.5244 (18)N1—H1C0.91
C3—H3A0.99
O2—C1—O1123.25 (12)C4—C3—H3B111.6
O2—C1—C2127.40 (12)H3A—C3—H3B109.4
O1—C1—C2109.35 (10)O1—C4—C3105.16 (10)
O2—C1—Br196.27 (8)O1—C4—H4A110.7
O1—C1—Br180.12 (7)C3—C4—H4A110.7
C2—C1—Br192.37 (7)O1—C4—H4B110.7
N1—C2—C1110.70 (10)C3—C4—H4B110.7
N1—C2—C3114.11 (10)H4A—C4—H4B108.8
C1—C2—C3103.42 (10)C2—N1—H1A109.5
N1—C2—H2109.5C2—N1—H1B109.5
C1—C2—H2109.5H1A—N1—H1B109.5
C3—C2—H2109.5C2—N1—H1C109.5
C2—C3—C4101.11 (10)H1A—N1—H1C109.5
C2—C3—H3A111.6H1B—N1—H1C109.5
C4—C3—H3A111.6C1—O1—C4109.98 (10)
C2—C3—H3B111.6
O2—C1—C2—N135.80 (17)C1—C2—C3—C431.16 (13)
O1—C1—C2—N1−144.09 (10)C2—C3—C4—O1−31.04 (14)
Br1—C1—C2—N1135.54 (8)O2—C1—O1—C4−178.50 (13)
O2—C1—C2—C3158.41 (13)C2—C1—O1—C41.40 (14)
O1—C1—C2—C3−21.48 (13)Br1—C1—O1—C490.45 (9)
Br1—C1—C2—C3−101.84 (8)C3—C4—O1—C119.30 (15)
N1—C2—C3—C4151.48 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Br1i0.912.473.3407 (12)161
N1—H1B···Br1ii0.912.413.3046 (10)168
N1—H1C···Br1iii0.912.513.3644 (13)157
N1—H1C···O1iii0.912.53.0050 (14)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯Br1i 0.912.473.3407 (12)161
N1—H1B⋯Br1ii 0.912.413.3046 (10)168
N1—H1C⋯Br1iii 0.912.513.3644 (13)157
N1—H1C⋯O1iii 0.912.53.0050 (14)115

Symmetry codes: (i) ; (ii) ; (iii) .

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3.  The preparation of D- and L-homoserine.

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4.  Determination of absolute structure using Bayesian statistics on Bijvoet differences.

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