Literature DB >> 22904928

4-[(4-Chloro-phen-yl)(phen-yl)-meth-yl]-piperazin-1-ium picrate monohydrate.

Yanxi Song, C S Chidan Kumar, S Chandraju, S Naveen, Hongqi Li.   

Abstract

The asymmetric unit of the title compound, C(17)H(20)ClN(2) (+)·C(6)H(2)N(3)O(7) (-)·H(2)O, contains a piperazin-1-ium cation, a picrate anion and one solvent water mol-ecule. The piperazene ring is protonated at one N atom and adopts a highly distorted chair conformation with the chloro-pheny(phen-yl)methyl substituent on the second N atom in an equatorial position. The crystal structure is stabilized by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22904928      PMCID: PMC3414941          DOI: 10.1107/S1600536812031984

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 1-benzyl­piperazine, see: Campbell et al. (1973 ▶). For related structures, see: Jasinski et al. (2011 ▶); Song et al. (2012 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H20ClN2 +·C6H2N3O7 −·H2O M = 533.92 Monoclinic, a = 21.144 (2) Å b = 8.2997 (8) Å c = 28.528 (3) Å β = 93.029 (1)° V = 4999.3 (8) Å3 Z = 8 Mo Kα radiation μ = 0.21 mm−1 T = 296 K 0.25 × 0.22 × 0.07 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.949, T max = 0.985 12567 measured reflections 4417 independent reflections 2996 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.175 S = 1.04 4417 reflections 334 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812031984/sj5246sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031984/sj5246Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031984/sj5246Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20ClN2+·C6H2N3O7·H2OF(000) = 2224
Mr = 533.92Dx = 1.419 Mg m3
Monoclinic, C2/cMelting point = 441–445 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 21.144 (2) ÅCell parameters from 2514 reflections
b = 8.2997 (8) Åθ = 2.3–21.0°
c = 28.528 (3) ŵ = 0.21 mm1
β = 93.029 (1)°T = 296 K
V = 4999.3 (8) Å3Block, yellow
Z = 80.25 × 0.22 × 0.07 mm
Bruker APEXII CCD diffractometer4417 independent reflections
Radiation source: fine-focus sealed tube2996 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
φ and ω scansθmax = 25.1°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −25→20
Tmin = 0.949, Tmax = 0.985k = −9→8
12567 measured reflectionsl = −31→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0837P)2 + 4.3115P] where P = (Fo2 + 2Fc2)/3
4417 reflections(Δ/σ)max < 0.001
334 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.46 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4904 (2)0.8333 (6)0.18443 (11)0.0783 (11)
C20.5527 (2)0.8799 (4)0.19014 (11)0.0737 (10)
H20.56330.98730.19550.088*
C30.59944 (16)0.7637 (4)0.18770 (10)0.0606 (8)
H30.64180.79380.19150.073*
C40.58414 (13)0.6039 (4)0.17965 (9)0.0490 (7)
C50.52105 (16)0.5623 (5)0.17391 (12)0.0700 (9)
H50.51000.45530.16820.084*
C60.47386 (18)0.6774 (7)0.17651 (14)0.0917 (13)
H60.43140.64810.17290.110*
C70.63529 (13)0.4768 (3)0.17948 (9)0.0471 (7)
H70.61580.37400.16990.057*
C80.66452 (14)0.4592 (3)0.22959 (9)0.0472 (7)
C90.63449 (16)0.3611 (4)0.26056 (10)0.0609 (8)
H90.59910.30160.25030.073*
C100.65702 (19)0.3512 (4)0.30690 (11)0.0749 (10)
H100.63560.28840.32790.090*
C110.7106 (2)0.4329 (4)0.32234 (11)0.0766 (11)
H110.72590.42400.35340.092*
C120.74098 (18)0.5272 (4)0.29149 (11)0.0683 (9)
H120.77760.58200.30150.082*
C130.71784 (15)0.5421 (3)0.24554 (10)0.0572 (8)
H130.73850.60890.22510.069*
C140.65583 (14)0.5363 (4)0.09816 (9)0.0526 (7)
H14A0.62200.61540.09800.063*
H14B0.63790.43450.08740.063*
C150.70566 (15)0.5901 (4)0.06551 (10)0.0569 (8)
H15A0.68690.59890.03380.068*
H15B0.72130.69560.07500.068*
C160.78429 (15)0.4460 (4)0.11470 (10)0.0624 (8)
H16A0.80310.54430.12740.075*
H16B0.81700.36400.11480.075*
C170.73229 (14)0.3923 (4)0.14476 (10)0.0535 (7)
H17A0.71350.29370.13210.064*
H17B0.74950.37030.17630.064*
C180.89491 (14)0.6145 (3)0.98892 (9)0.0476 (7)
C190.92823 (13)0.7277 (3)1.01969 (9)0.0458 (6)
C200.98723 (13)0.7849 (3)1.01257 (9)0.0478 (7)
H201.00650.85631.03400.057*
C211.01856 (13)0.7372 (3)0.97362 (9)0.0463 (6)
C220.98998 (13)0.6302 (3)0.94120 (9)0.0473 (7)
H221.01110.59660.91510.057*
C230.93097 (14)0.5763 (3)0.94855 (8)0.0456 (6)
Cl10.43227 (7)0.9810 (2)0.18712 (4)0.1402 (6)
N10.68382 (10)0.5177 (2)0.14618 (7)0.0434 (5)
N20.75908 (12)0.4746 (3)0.06606 (8)0.0579 (7)
H2A0.74580.38080.05310.069*
H2B0.79000.51400.04880.069*
N30.89901 (14)0.7854 (3)1.06134 (9)0.0658 (7)
N41.08105 (12)0.7960 (3)0.96648 (9)0.0631 (7)
N50.90198 (15)0.4691 (3)0.91305 (9)0.0638 (7)
O10.84301 (10)0.5503 (3)0.99573 (7)0.0664 (6)
O20.84210 (16)0.7700 (4)1.06424 (12)0.1309 (14)
O30.92957 (14)0.8649 (4)1.08951 (9)0.1129 (11)
O41.10570 (11)0.8886 (3)0.99550 (9)0.0830 (7)
O51.10730 (11)0.7526 (4)0.93145 (9)0.0903 (8)
O60.93478 (15)0.3624 (3)0.89779 (9)0.0927 (9)
O70.84749 (14)0.4966 (4)0.89915 (9)0.0922 (9)
O1W0.74452 (12)0.3604 (3)0.95584 (11)0.0996 (9)
H1WA0.77560.42100.96380.100*
H1WB0.72190.40090.93330.100*
U11U22U33U12U13U23
C10.076 (3)0.113 (3)0.0465 (18)0.037 (2)0.0071 (17)0.008 (2)
C20.104 (3)0.069 (2)0.0476 (18)0.020 (2)0.0063 (18)−0.0020 (16)
C30.063 (2)0.066 (2)0.0534 (17)0.0055 (16)0.0062 (14)−0.0042 (15)
C40.0517 (17)0.0633 (19)0.0323 (13)−0.0009 (14)0.0060 (11)0.0012 (12)
C50.057 (2)0.086 (2)0.066 (2)−0.0055 (18)−0.0042 (16)0.0045 (18)
C60.053 (2)0.139 (4)0.083 (3)0.013 (2)−0.0016 (19)0.021 (3)
C70.0550 (17)0.0479 (16)0.0390 (14)−0.0083 (13)0.0066 (12)−0.0017 (12)
C80.0609 (18)0.0451 (15)0.0362 (14)0.0050 (13)0.0099 (12)0.0016 (12)
C90.070 (2)0.0621 (19)0.0514 (17)−0.0011 (16)0.0138 (15)0.0072 (15)
C100.102 (3)0.078 (2)0.0464 (18)0.010 (2)0.0210 (18)0.0172 (17)
C110.114 (3)0.074 (2)0.0407 (17)0.022 (2)−0.0060 (18)−0.0037 (17)
C120.092 (3)0.059 (2)0.0517 (19)0.0035 (18)−0.0103 (17)−0.0110 (16)
C130.076 (2)0.0493 (17)0.0459 (16)−0.0060 (15)0.0015 (14)0.0000 (13)
C140.0597 (18)0.0622 (18)0.0360 (14)−0.0025 (14)0.0050 (12)0.0029 (13)
C150.068 (2)0.0625 (19)0.0413 (15)−0.0056 (15)0.0105 (13)0.0058 (13)
C160.0562 (19)0.077 (2)0.0551 (18)0.0061 (16)0.0105 (14)−0.0074 (16)
C170.0615 (18)0.0558 (17)0.0437 (15)0.0042 (14)0.0074 (13)−0.0004 (13)
C180.0596 (18)0.0456 (15)0.0377 (14)−0.0050 (13)0.0036 (12)0.0050 (12)
C190.0569 (18)0.0463 (15)0.0349 (13)−0.0004 (13)0.0105 (12)−0.0017 (11)
C200.0556 (18)0.0469 (15)0.0407 (14)0.0011 (13)0.0000 (12)−0.0056 (12)
C210.0450 (16)0.0524 (16)0.0416 (14)0.0024 (12)0.0037 (12)−0.0032 (12)
C220.0587 (18)0.0481 (16)0.0357 (14)0.0051 (13)0.0066 (12)0.0004 (12)
C230.0615 (18)0.0420 (15)0.0332 (13)−0.0034 (13)0.0002 (12)−0.0011 (11)
Cl10.1339 (11)0.1911 (15)0.0945 (9)0.1027 (11)−0.0038 (7)0.0031 (8)
N10.0497 (13)0.0483 (13)0.0329 (11)0.0007 (10)0.0079 (9)0.0009 (9)
N20.0628 (16)0.0653 (16)0.0474 (14)−0.0124 (13)0.0204 (11)−0.0090 (12)
N30.073 (2)0.0739 (18)0.0525 (15)−0.0172 (15)0.0207 (14)−0.0167 (13)
N40.0517 (16)0.0783 (18)0.0599 (16)−0.0023 (13)0.0082 (13)−0.0124 (14)
N50.083 (2)0.0657 (18)0.0430 (14)−0.0191 (16)0.0051 (14)−0.0043 (13)
O10.0707 (15)0.0780 (15)0.0518 (12)−0.0294 (12)0.0165 (10)−0.0060 (10)
O20.110 (2)0.157 (3)0.134 (3)−0.068 (2)0.080 (2)−0.084 (2)
O30.096 (2)0.176 (3)0.0682 (16)−0.019 (2)0.0176 (14)−0.0608 (19)
O40.0640 (15)0.1024 (19)0.0827 (16)−0.0237 (14)0.0053 (12)−0.0275 (15)
O50.0620 (15)0.131 (2)0.0809 (17)−0.0089 (15)0.0277 (13)−0.0341 (16)
O60.142 (3)0.0651 (15)0.0704 (16)−0.0023 (16)0.0001 (16)−0.0268 (13)
O70.0768 (18)0.135 (2)0.0642 (16)−0.0288 (17)−0.0021 (13)−0.0199 (15)
O1W0.0735 (17)0.0920 (19)0.133 (2)−0.0152 (14)0.0024 (16)−0.0241 (17)
C1—C61.356 (6)C15—H15B0.9700
C1—C21.376 (5)C16—N21.479 (4)
C1—Cl11.740 (4)C16—C171.497 (4)
C2—C31.384 (5)C16—H16A0.9700
C2—H20.9300C16—H16B0.9700
C3—C41.382 (4)C17—N11.463 (3)
C3—H30.9300C17—H17A0.9700
C4—C51.379 (4)C17—H17B0.9700
C4—C71.511 (4)C18—O11.244 (3)
C5—C61.386 (5)C18—C191.444 (4)
C5—H50.9300C18—C231.449 (4)
C6—H60.9300C19—C201.360 (4)
C7—N11.474 (3)C19—N31.449 (4)
C7—C81.534 (4)C20—C211.381 (4)
C7—H70.9800C20—H200.9300
C8—C131.378 (4)C21—C221.397 (4)
C8—C91.381 (4)C21—N41.433 (4)
C9—C101.384 (4)C22—C231.352 (4)
C9—H90.9300C22—H220.9300
C10—C111.372 (5)C23—N51.459 (4)
C10—H100.9300N2—H2A0.9000
C11—C121.364 (5)N2—H2B0.9000
C11—H110.9300N3—O31.202 (3)
C12—C131.380 (4)N3—O21.217 (4)
C12—H120.9300N4—O51.223 (3)
C13—H130.9300N4—O41.226 (3)
C14—N11.471 (3)N5—O61.219 (4)
C14—C151.510 (4)N5—O71.220 (4)
C14—H14A0.9700O1W—H1WA0.8501
C14—H14B0.9700O1W—H1WA0.8501
C15—N21.481 (4)O1W—H1WB0.8502
C15—H15A0.9700
C6—C1—C2121.6 (3)H15A—C15—H15B108.0
C6—C1—Cl1120.2 (4)N2—C16—C17110.2 (2)
C2—C1—Cl1118.2 (4)N2—C16—H16A109.6
C1—C2—C3118.7 (4)C17—C16—H16A109.6
C1—C2—H2120.6N2—C16—H16B109.6
C3—C2—H2120.6C17—C16—H16B109.6
C4—C3—C2121.0 (3)H16A—C16—H16B108.1
C4—C3—H3119.5N1—C17—C16109.9 (2)
C2—C3—H3119.5N1—C17—H17A109.7
C5—C4—C3118.5 (3)C16—C17—H17A109.7
C5—C4—C7120.9 (3)N1—C17—H17B109.7
C3—C4—C7120.6 (3)C16—C17—H17B109.7
C4—C5—C6121.0 (4)H17A—C17—H17B108.2
C4—C5—H5119.5O1—C18—C19126.1 (3)
C6—C5—H5119.5O1—C18—C23122.4 (2)
C1—C6—C5119.2 (4)C19—C18—C23111.4 (2)
C1—C6—H6120.4C20—C19—C18123.9 (2)
C5—C6—H6120.4C20—C19—N3116.2 (2)
N1—C7—C4111.4 (2)C18—C19—N3119.9 (3)
N1—C7—C8111.3 (2)C19—C20—C21120.2 (2)
C4—C7—C8108.5 (2)C19—C20—H20119.9
N1—C7—H7108.6C21—C20—H20119.9
C4—C7—H7108.6C20—C21—C22120.4 (3)
C8—C7—H7108.6C20—C21—N4120.1 (2)
C13—C8—C9118.6 (3)C22—C21—N4119.5 (2)
C13—C8—C7122.8 (2)C23—C22—C21118.6 (2)
C9—C8—C7118.5 (3)C23—C22—H22120.7
C8—C9—C10120.0 (3)C21—C22—H22120.7
C8—C9—H9120.0C22—C23—C18125.4 (2)
C10—C9—H9120.0C22—C23—N5116.8 (2)
C11—C10—C9120.9 (3)C18—C23—N5117.7 (3)
C11—C10—H10119.5C17—N1—C14107.3 (2)
C9—C10—H10119.5C17—N1—C7111.5 (2)
C12—C11—C10119.1 (3)C14—N1—C7111.4 (2)
C12—C11—H11120.5C16—N2—C15110.5 (2)
C10—C11—H11120.5C16—N2—H2A109.5
C11—C12—C13120.6 (3)C15—N2—H2A109.5
C11—C12—H12119.7C16—N2—H2B109.5
C13—C12—H12119.7C15—N2—H2B109.5
C8—C13—C12120.8 (3)H2A—N2—H2B108.1
C8—C13—H13119.6O3—N3—O2120.7 (3)
C12—C13—H13119.6O3—N3—C19119.5 (3)
N1—C14—C15110.2 (2)O2—N3—C19119.1 (3)
N1—C14—H14A109.6O5—N4—O4122.8 (3)
C15—C14—H14A109.6O5—N4—C21118.5 (3)
N1—C14—H14B109.6O4—N4—C21118.7 (2)
C15—C14—H14B109.6O6—N5—O7124.4 (3)
H14A—C14—H14B108.1O6—N5—C23117.7 (3)
N2—C15—C14111.0 (2)O7—N5—C23117.8 (3)
N2—C15—H15A109.4H1WA—O1W—H1WA0.0
C14—C15—H15A109.4H1WA—O1W—H1WB111.4
N2—C15—H15B109.4H1WA—O1W—H1WB111.4
C14—C15—H15B109.4
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1Wi0.902.032.850 (4)151
N2—H2B···O1ii0.901.962.819 (3)160
N2—H2B···O2ii0.902.423.017 (4)124
O1W—H1WA···O10.851.972.805 (3)168
C16—H16B···O5iii0.972.343.166 (4)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O1W i 0.902.032.850 (4)151
N2—H2B⋯O1ii 0.901.962.819 (3)160
N2—H2B⋯O2ii 0.902.423.017 (4)124
O1W—H1WA⋯O10.851.972.805 (3)168
C16—H16B⋯O5iii 0.972.343.166 (4)143

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Comparison of the effects of dexamphetamine and 1-benzylpiperazine in former addicts.

Authors:  H Campbell; W Cline; M Evans; J Lloyd; A W Peck
Journal:  Eur J Clin Pharmacol       Date:  1973-10       Impact factor: 2.953

3.  Cinnarizinium dipicrate.

Authors:  Jerry P Jasinski; Ray J Butcher; M S Siddegowda; H S Yathirajan; C S Chidan Kumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-26

4.  Cinnarizinium picrate.

Authors:  Yanxi Song; C S Chidan Kumar; G B Nethravathi; S Naveen; Hongqi Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-16
  4 in total

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