| Literature DB >> 22904928 |
Yanxi Song, C S Chidan Kumar, S Chandraju, S Naveen, Hongqi Li.
Abstract
The asymmetric unit of the title compound, C(17)H(20)ClN(2) (+)·C(6)H(2)N(3)O(7) (-)·H(2)O, contains a piperazin-1-ium cation, a picrate anion and one solvent water mol-ecule. The piperazene ring is protonated at one N atom and adopts a highly distorted chair conformation with the chloro-pheny(phen-yl)methyl substituent on the second N atom in an equatorial position. The crystal structure is stabilized by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds.Entities:
Year: 2012 PMID: 22904928 PMCID: PMC3414941 DOI: 10.1107/S1600536812031984
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H20ClN2+·C6H2N3O7−·H2O | |
| Monoclinic, | Melting point = 441–445 K |
| Hall symbol: -C 2yc | Mo |
| Cell parameters from 2514 reflections | |
| θ = 2.3–21.0° | |
| µ = 0.21 mm−1 | |
| β = 93.029 (1)° | |
| Block, yellow | |
| 0.25 × 0.22 × 0.07 mm |
| Bruker APEXII CCD diffractometer | 4417 independent reflections |
| Radiation source: fine-focus sealed tube | 2996 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.1°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 12567 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4417 reflections | (Δ/σ)max < 0.001 |
| 334 parameters | Δρmax = 0.63 e Å−3 |
| 0 restraints | Δρmin = −0.46 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.4904 (2) | 0.8333 (6) | 0.18443 (11) | 0.0783 (11) | |
| C2 | 0.5527 (2) | 0.8799 (4) | 0.19014 (11) | 0.0737 (10) | |
| H2 | 0.5633 | 0.9873 | 0.1955 | 0.088* | |
| C3 | 0.59944 (16) | 0.7637 (4) | 0.18770 (10) | 0.0606 (8) | |
| H3 | 0.6418 | 0.7938 | 0.1915 | 0.073* | |
| C4 | 0.58414 (13) | 0.6039 (4) | 0.17965 (9) | 0.0490 (7) | |
| C5 | 0.52105 (16) | 0.5623 (5) | 0.17391 (12) | 0.0700 (9) | |
| H5 | 0.5100 | 0.4553 | 0.1682 | 0.084* | |
| C6 | 0.47386 (18) | 0.6774 (7) | 0.17651 (14) | 0.0917 (13) | |
| H6 | 0.4314 | 0.6481 | 0.1729 | 0.110* | |
| C7 | 0.63529 (13) | 0.4768 (3) | 0.17948 (9) | 0.0471 (7) | |
| H7 | 0.6158 | 0.3740 | 0.1699 | 0.057* | |
| C8 | 0.66452 (14) | 0.4592 (3) | 0.22959 (9) | 0.0472 (7) | |
| C9 | 0.63449 (16) | 0.3611 (4) | 0.26056 (10) | 0.0609 (8) | |
| H9 | 0.5991 | 0.3016 | 0.2503 | 0.073* | |
| C10 | 0.65702 (19) | 0.3512 (4) | 0.30690 (11) | 0.0749 (10) | |
| H10 | 0.6356 | 0.2884 | 0.3279 | 0.090* | |
| C11 | 0.7106 (2) | 0.4329 (4) | 0.32234 (11) | 0.0766 (11) | |
| H11 | 0.7259 | 0.4240 | 0.3534 | 0.092* | |
| C12 | 0.74098 (18) | 0.5272 (4) | 0.29149 (11) | 0.0683 (9) | |
| H12 | 0.7776 | 0.5820 | 0.3015 | 0.082* | |
| C13 | 0.71784 (15) | 0.5421 (3) | 0.24554 (10) | 0.0572 (8) | |
| H13 | 0.7385 | 0.6089 | 0.2251 | 0.069* | |
| C14 | 0.65583 (14) | 0.5363 (4) | 0.09816 (9) | 0.0526 (7) | |
| H14A | 0.6220 | 0.6154 | 0.0980 | 0.063* | |
| H14B | 0.6379 | 0.4345 | 0.0874 | 0.063* | |
| C15 | 0.70566 (15) | 0.5901 (4) | 0.06551 (10) | 0.0569 (8) | |
| H15A | 0.6869 | 0.5989 | 0.0338 | 0.068* | |
| H15B | 0.7213 | 0.6956 | 0.0750 | 0.068* | |
| C16 | 0.78429 (15) | 0.4460 (4) | 0.11470 (10) | 0.0624 (8) | |
| H16A | 0.8031 | 0.5443 | 0.1274 | 0.075* | |
| H16B | 0.8170 | 0.3640 | 0.1148 | 0.075* | |
| C17 | 0.73229 (14) | 0.3923 (4) | 0.14476 (10) | 0.0535 (7) | |
| H17A | 0.7135 | 0.2937 | 0.1321 | 0.064* | |
| H17B | 0.7495 | 0.3703 | 0.1763 | 0.064* | |
| C18 | 0.89491 (14) | 0.6145 (3) | 0.98892 (9) | 0.0476 (7) | |
| C19 | 0.92823 (13) | 0.7277 (3) | 1.01969 (9) | 0.0458 (6) | |
| C20 | 0.98723 (13) | 0.7849 (3) | 1.01257 (9) | 0.0478 (7) | |
| H20 | 1.0065 | 0.8563 | 1.0340 | 0.057* | |
| C21 | 1.01856 (13) | 0.7372 (3) | 0.97362 (9) | 0.0463 (6) | |
| C22 | 0.98998 (13) | 0.6302 (3) | 0.94120 (9) | 0.0473 (7) | |
| H22 | 1.0111 | 0.5966 | 0.9151 | 0.057* | |
| C23 | 0.93097 (14) | 0.5763 (3) | 0.94855 (8) | 0.0456 (6) | |
| Cl1 | 0.43227 (7) | 0.9810 (2) | 0.18712 (4) | 0.1402 (6) | |
| N1 | 0.68382 (10) | 0.5177 (2) | 0.14618 (7) | 0.0434 (5) | |
| N2 | 0.75908 (12) | 0.4746 (3) | 0.06606 (8) | 0.0579 (7) | |
| H2A | 0.7458 | 0.3808 | 0.0531 | 0.069* | |
| H2B | 0.7900 | 0.5140 | 0.0488 | 0.069* | |
| N3 | 0.89901 (14) | 0.7854 (3) | 1.06134 (9) | 0.0658 (7) | |
| N4 | 1.08105 (12) | 0.7960 (3) | 0.96648 (9) | 0.0631 (7) | |
| N5 | 0.90198 (15) | 0.4691 (3) | 0.91305 (9) | 0.0638 (7) | |
| O1 | 0.84301 (10) | 0.5503 (3) | 0.99573 (7) | 0.0664 (6) | |
| O2 | 0.84210 (16) | 0.7700 (4) | 1.06424 (12) | 0.1309 (14) | |
| O3 | 0.92957 (14) | 0.8649 (4) | 1.08951 (9) | 0.1129 (11) | |
| O4 | 1.10570 (11) | 0.8886 (3) | 0.99550 (9) | 0.0830 (7) | |
| O5 | 1.10730 (11) | 0.7526 (4) | 0.93145 (9) | 0.0903 (8) | |
| O6 | 0.93478 (15) | 0.3624 (3) | 0.89779 (9) | 0.0927 (9) | |
| O7 | 0.84749 (14) | 0.4966 (4) | 0.89915 (9) | 0.0922 (9) | |
| O1W | 0.74452 (12) | 0.3604 (3) | 0.95584 (11) | 0.0996 (9) | |
| H1WA | 0.7756 | 0.4210 | 0.9638 | 0.100* | |
| H1WB | 0.7219 | 0.4009 | 0.9333 | 0.100* |
| C1 | 0.076 (3) | 0.113 (3) | 0.0465 (18) | 0.037 (2) | 0.0071 (17) | 0.008 (2) |
| C2 | 0.104 (3) | 0.069 (2) | 0.0476 (18) | 0.020 (2) | 0.0063 (18) | −0.0020 (16) |
| C3 | 0.063 (2) | 0.066 (2) | 0.0534 (17) | 0.0055 (16) | 0.0062 (14) | −0.0042 (15) |
| C4 | 0.0517 (17) | 0.0633 (19) | 0.0323 (13) | −0.0009 (14) | 0.0060 (11) | 0.0012 (12) |
| C5 | 0.057 (2) | 0.086 (2) | 0.066 (2) | −0.0055 (18) | −0.0042 (16) | 0.0045 (18) |
| C6 | 0.053 (2) | 0.139 (4) | 0.083 (3) | 0.013 (2) | −0.0016 (19) | 0.021 (3) |
| C7 | 0.0550 (17) | 0.0479 (16) | 0.0390 (14) | −0.0083 (13) | 0.0066 (12) | −0.0017 (12) |
| C8 | 0.0609 (18) | 0.0451 (15) | 0.0362 (14) | 0.0050 (13) | 0.0099 (12) | 0.0016 (12) |
| C9 | 0.070 (2) | 0.0621 (19) | 0.0514 (17) | −0.0011 (16) | 0.0138 (15) | 0.0072 (15) |
| C10 | 0.102 (3) | 0.078 (2) | 0.0464 (18) | 0.010 (2) | 0.0210 (18) | 0.0172 (17) |
| C11 | 0.114 (3) | 0.074 (2) | 0.0407 (17) | 0.022 (2) | −0.0060 (18) | −0.0037 (17) |
| C12 | 0.092 (3) | 0.059 (2) | 0.0517 (19) | 0.0035 (18) | −0.0103 (17) | −0.0110 (16) |
| C13 | 0.076 (2) | 0.0493 (17) | 0.0459 (16) | −0.0060 (15) | 0.0015 (14) | 0.0000 (13) |
| C14 | 0.0597 (18) | 0.0622 (18) | 0.0360 (14) | −0.0025 (14) | 0.0050 (12) | 0.0029 (13) |
| C15 | 0.068 (2) | 0.0625 (19) | 0.0413 (15) | −0.0056 (15) | 0.0105 (13) | 0.0058 (13) |
| C16 | 0.0562 (19) | 0.077 (2) | 0.0551 (18) | 0.0061 (16) | 0.0105 (14) | −0.0074 (16) |
| C17 | 0.0615 (18) | 0.0558 (17) | 0.0437 (15) | 0.0042 (14) | 0.0074 (13) | −0.0004 (13) |
| C18 | 0.0596 (18) | 0.0456 (15) | 0.0377 (14) | −0.0050 (13) | 0.0036 (12) | 0.0050 (12) |
| C19 | 0.0569 (18) | 0.0463 (15) | 0.0349 (13) | −0.0004 (13) | 0.0105 (12) | −0.0017 (11) |
| C20 | 0.0556 (18) | 0.0469 (15) | 0.0407 (14) | 0.0011 (13) | 0.0000 (12) | −0.0056 (12) |
| C21 | 0.0450 (16) | 0.0524 (16) | 0.0416 (14) | 0.0024 (12) | 0.0037 (12) | −0.0032 (12) |
| C22 | 0.0587 (18) | 0.0481 (16) | 0.0357 (14) | 0.0051 (13) | 0.0066 (12) | 0.0004 (12) |
| C23 | 0.0615 (18) | 0.0420 (15) | 0.0332 (13) | −0.0034 (13) | 0.0002 (12) | −0.0011 (11) |
| Cl1 | 0.1339 (11) | 0.1911 (15) | 0.0945 (9) | 0.1027 (11) | −0.0038 (7) | 0.0031 (8) |
| N1 | 0.0497 (13) | 0.0483 (13) | 0.0329 (11) | 0.0007 (10) | 0.0079 (9) | 0.0009 (9) |
| N2 | 0.0628 (16) | 0.0653 (16) | 0.0474 (14) | −0.0124 (13) | 0.0204 (11) | −0.0090 (12) |
| N3 | 0.073 (2) | 0.0739 (18) | 0.0525 (15) | −0.0172 (15) | 0.0207 (14) | −0.0167 (13) |
| N4 | 0.0517 (16) | 0.0783 (18) | 0.0599 (16) | −0.0023 (13) | 0.0082 (13) | −0.0124 (14) |
| N5 | 0.083 (2) | 0.0657 (18) | 0.0430 (14) | −0.0191 (16) | 0.0051 (14) | −0.0043 (13) |
| O1 | 0.0707 (15) | 0.0780 (15) | 0.0518 (12) | −0.0294 (12) | 0.0165 (10) | −0.0060 (10) |
| O2 | 0.110 (2) | 0.157 (3) | 0.134 (3) | −0.068 (2) | 0.080 (2) | −0.084 (2) |
| O3 | 0.096 (2) | 0.176 (3) | 0.0682 (16) | −0.019 (2) | 0.0176 (14) | −0.0608 (19) |
| O4 | 0.0640 (15) | 0.1024 (19) | 0.0827 (16) | −0.0237 (14) | 0.0053 (12) | −0.0275 (15) |
| O5 | 0.0620 (15) | 0.131 (2) | 0.0809 (17) | −0.0089 (15) | 0.0277 (13) | −0.0341 (16) |
| O6 | 0.142 (3) | 0.0651 (15) | 0.0704 (16) | −0.0023 (16) | 0.0001 (16) | −0.0268 (13) |
| O7 | 0.0768 (18) | 0.135 (2) | 0.0642 (16) | −0.0288 (17) | −0.0021 (13) | −0.0199 (15) |
| O1W | 0.0735 (17) | 0.0920 (19) | 0.133 (2) | −0.0152 (14) | 0.0024 (16) | −0.0241 (17) |
| C1—C6 | 1.356 (6) | C15—H15B | 0.9700 |
| C1—C2 | 1.376 (5) | C16—N2 | 1.479 (4) |
| C1—Cl1 | 1.740 (4) | C16—C17 | 1.497 (4) |
| C2—C3 | 1.384 (5) | C16—H16A | 0.9700 |
| C2—H2 | 0.9300 | C16—H16B | 0.9700 |
| C3—C4 | 1.382 (4) | C17—N1 | 1.463 (3) |
| C3—H3 | 0.9300 | C17—H17A | 0.9700 |
| C4—C5 | 1.379 (4) | C17—H17B | 0.9700 |
| C4—C7 | 1.511 (4) | C18—O1 | 1.244 (3) |
| C5—C6 | 1.386 (5) | C18—C19 | 1.444 (4) |
| C5—H5 | 0.9300 | C18—C23 | 1.449 (4) |
| C6—H6 | 0.9300 | C19—C20 | 1.360 (4) |
| C7—N1 | 1.474 (3) | C19—N3 | 1.449 (4) |
| C7—C8 | 1.534 (4) | C20—C21 | 1.381 (4) |
| C7—H7 | 0.9800 | C20—H20 | 0.9300 |
| C8—C13 | 1.378 (4) | C21—C22 | 1.397 (4) |
| C8—C9 | 1.381 (4) | C21—N4 | 1.433 (4) |
| C9—C10 | 1.384 (4) | C22—C23 | 1.352 (4) |
| C9—H9 | 0.9300 | C22—H22 | 0.9300 |
| C10—C11 | 1.372 (5) | C23—N5 | 1.459 (4) |
| C10—H10 | 0.9300 | N2—H2A | 0.9000 |
| C11—C12 | 1.364 (5) | N2—H2B | 0.9000 |
| C11—H11 | 0.9300 | N3—O3 | 1.202 (3) |
| C12—C13 | 1.380 (4) | N3—O2 | 1.217 (4) |
| C12—H12 | 0.9300 | N4—O5 | 1.223 (3) |
| C13—H13 | 0.9300 | N4—O4 | 1.226 (3) |
| C14—N1 | 1.471 (3) | N5—O6 | 1.219 (4) |
| C14—C15 | 1.510 (4) | N5—O7 | 1.220 (4) |
| C14—H14A | 0.9700 | O1W—H1WA | 0.8501 |
| C14—H14B | 0.9700 | O1W—H1WA | 0.8501 |
| C15—N2 | 1.481 (4) | O1W—H1WB | 0.8502 |
| C15—H15A | 0.9700 | ||
| C6—C1—C2 | 121.6 (3) | H15A—C15—H15B | 108.0 |
| C6—C1—Cl1 | 120.2 (4) | N2—C16—C17 | 110.2 (2) |
| C2—C1—Cl1 | 118.2 (4) | N2—C16—H16A | 109.6 |
| C1—C2—C3 | 118.7 (4) | C17—C16—H16A | 109.6 |
| C1—C2—H2 | 120.6 | N2—C16—H16B | 109.6 |
| C3—C2—H2 | 120.6 | C17—C16—H16B | 109.6 |
| C4—C3—C2 | 121.0 (3) | H16A—C16—H16B | 108.1 |
| C4—C3—H3 | 119.5 | N1—C17—C16 | 109.9 (2) |
| C2—C3—H3 | 119.5 | N1—C17—H17A | 109.7 |
| C5—C4—C3 | 118.5 (3) | C16—C17—H17A | 109.7 |
| C5—C4—C7 | 120.9 (3) | N1—C17—H17B | 109.7 |
| C3—C4—C7 | 120.6 (3) | C16—C17—H17B | 109.7 |
| C4—C5—C6 | 121.0 (4) | H17A—C17—H17B | 108.2 |
| C4—C5—H5 | 119.5 | O1—C18—C19 | 126.1 (3) |
| C6—C5—H5 | 119.5 | O1—C18—C23 | 122.4 (2) |
| C1—C6—C5 | 119.2 (4) | C19—C18—C23 | 111.4 (2) |
| C1—C6—H6 | 120.4 | C20—C19—C18 | 123.9 (2) |
| C5—C6—H6 | 120.4 | C20—C19—N3 | 116.2 (2) |
| N1—C7—C4 | 111.4 (2) | C18—C19—N3 | 119.9 (3) |
| N1—C7—C8 | 111.3 (2) | C19—C20—C21 | 120.2 (2) |
| C4—C7—C8 | 108.5 (2) | C19—C20—H20 | 119.9 |
| N1—C7—H7 | 108.6 | C21—C20—H20 | 119.9 |
| C4—C7—H7 | 108.6 | C20—C21—C22 | 120.4 (3) |
| C8—C7—H7 | 108.6 | C20—C21—N4 | 120.1 (2) |
| C13—C8—C9 | 118.6 (3) | C22—C21—N4 | 119.5 (2) |
| C13—C8—C7 | 122.8 (2) | C23—C22—C21 | 118.6 (2) |
| C9—C8—C7 | 118.5 (3) | C23—C22—H22 | 120.7 |
| C8—C9—C10 | 120.0 (3) | C21—C22—H22 | 120.7 |
| C8—C9—H9 | 120.0 | C22—C23—C18 | 125.4 (2) |
| C10—C9—H9 | 120.0 | C22—C23—N5 | 116.8 (2) |
| C11—C10—C9 | 120.9 (3) | C18—C23—N5 | 117.7 (3) |
| C11—C10—H10 | 119.5 | C17—N1—C14 | 107.3 (2) |
| C9—C10—H10 | 119.5 | C17—N1—C7 | 111.5 (2) |
| C12—C11—C10 | 119.1 (3) | C14—N1—C7 | 111.4 (2) |
| C12—C11—H11 | 120.5 | C16—N2—C15 | 110.5 (2) |
| C10—C11—H11 | 120.5 | C16—N2—H2A | 109.5 |
| C11—C12—C13 | 120.6 (3) | C15—N2—H2A | 109.5 |
| C11—C12—H12 | 119.7 | C16—N2—H2B | 109.5 |
| C13—C12—H12 | 119.7 | C15—N2—H2B | 109.5 |
| C8—C13—C12 | 120.8 (3) | H2A—N2—H2B | 108.1 |
| C8—C13—H13 | 119.6 | O3—N3—O2 | 120.7 (3) |
| C12—C13—H13 | 119.6 | O3—N3—C19 | 119.5 (3) |
| N1—C14—C15 | 110.2 (2) | O2—N3—C19 | 119.1 (3) |
| N1—C14—H14A | 109.6 | O5—N4—O4 | 122.8 (3) |
| C15—C14—H14A | 109.6 | O5—N4—C21 | 118.5 (3) |
| N1—C14—H14B | 109.6 | O4—N4—C21 | 118.7 (2) |
| C15—C14—H14B | 109.6 | O6—N5—O7 | 124.4 (3) |
| H14A—C14—H14B | 108.1 | O6—N5—C23 | 117.7 (3) |
| N2—C15—C14 | 111.0 (2) | O7—N5—C23 | 117.8 (3) |
| N2—C15—H15A | 109.4 | H1WA—O1W—H1WA | 0.0 |
| C14—C15—H15A | 109.4 | H1WA—O1W—H1WB | 111.4 |
| N2—C15—H15B | 109.4 | H1WA—O1W—H1WB | 111.4 |
| C14—C15—H15B | 109.4 |
| H··· | ||||
| N2—H2 | 0.90 | 2.03 | 2.850 (4) | 151 |
| N2—H2 | 0.90 | 1.96 | 2.819 (3) | 160 |
| N2—H2 | 0.90 | 2.42 | 3.017 (4) | 124 |
| O1 | 0.85 | 1.97 | 2.805 (3) | 168 |
| C16—H16 | 0.97 | 2.34 | 3.166 (4) | 143 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.90 | 2.03 | 2.850 (4) | 151 |
| N2—H2 | 0.90 | 1.96 | 2.819 (3) | 160 |
| N2—H2 | 0.90 | 2.42 | 3.017 (4) | 124 |
| O1 | 0.85 | 1.97 | 2.805 (3) | 168 |
| C16—H16 | 0.97 | 2.34 | 3.166 (4) | 143 |
Symmetry codes: (i) ; (ii) ; (iii) .