| Literature DB >> 22904913 |
Matloob Ahmad, Hamid Latif Siddiqui, Naveed Ahmad, Sana Aslam, Masood Parvez.
Abstract
In the title mol-ecule, C(20)H(19)FN(4)O(3)S, the heterocyclic thia-zine ring adopts a half-chair conformation with the S atom displaced by 0.668 (4) Å from the mean plane formed by the remaining ring atoms. The mean planes of the benzene and pyrazole rings are inclined with respect to each other at a dihedral angle of 17.4 (3)°. The acetamide chain (O/N/C/C/C) linking the pyrazole and 2-fluoro-benzyl rings is essentially planar (r.m.s. deviation = 0.030 Å) and forms dihedral angles with the mean planes of these rings of 78.8 (2) and 78.89 (14)°, respectively. The crystal structure is stabilized by N-H⋯O and C-H⋯O hydrogen-bonding inter-actions, resulting in a six-membered ring with an R(2) (1)(6) motif, while C-H⋯O and C-H⋯F hydrogen-bonding inter-actions result in chains of mol-ecules lying along the c axis in a zigzag fashion.Entities:
Year: 2012 PMID: 22904913 PMCID: PMC3414926 DOI: 10.1107/S160053681203187X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H19FN4O3S | |
| Orthorhombic, | Cu |
| Hall symbol: P 2c -2n | Cell parameters from 8539 reflections |
| θ = 3.2–67.4° | |
| µ = 1.88 mm−1 | |
| Needle, colorless | |
| 0.12 × 0.06 × 0.05 mm |
| Bruker SMART APEXII CCD diffractometer | 3009 independent reflections |
| Radiation source: fine-focus sealed tube | 2730 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 68.1°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 17539 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3009 reflections | Δρmax = 1.05 e Å−3 |
| 264 parameters | Δρmin = −0.45 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1207 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.05 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.18005 (14) | 0.5585 (5) | 0.5621 (5) | 0.0298 (9) | |
| C2 | 0.19683 (14) | 0.6653 (6) | 0.4508 (5) | 0.0366 (10) | |
| H2 | 0.2306 | 0.6695 | 0.4286 | 0.044* | |
| C3 | 0.16385 (16) | 0.7660 (6) | 0.3722 (6) | 0.0410 (11) | |
| H3 | 0.1747 | 0.8363 | 0.2928 | 0.049* | |
| C4 | 0.11472 (16) | 0.7642 (5) | 0.4095 (6) | 0.0411 (11) | |
| H4 | 0.0925 | 0.8391 | 0.3589 | 0.049* | |
| C5 | 0.09785 (14) | 0.6551 (5) | 0.5191 (5) | 0.0330 (10) | |
| H5 | 0.0642 | 0.6552 | 0.5433 | 0.040* | |
| C6 | 0.12980 (13) | 0.5455 (5) | 0.5939 (5) | 0.0276 (8) | |
| C7 | 0.11436 (12) | 0.4057 (5) | 0.6914 (5) | 0.0279 (8) | |
| C8 | 0.14419 (13) | 0.2643 (5) | 0.7402 (5) | 0.0294 (9) | |
| C9 | 0.21028 (17) | 0.0897 (7) | 0.6235 (6) | 0.0487 (13) | |
| H9A | 0.1937 | −0.0172 | 0.6608 | 0.073* | |
| H9B | 0.2456 | 0.0742 | 0.6326 | 0.073* | |
| H9C | 0.2018 | 0.1066 | 0.5216 | 0.073* | |
| C10 | 0.11529 (13) | 0.1512 (5) | 0.8186 (5) | 0.0309 (9) | |
| C11 | 0.12523 (17) | −0.0203 (6) | 0.8981 (6) | 0.0402 (11) | |
| H11A | 0.1037 | −0.0283 | 0.9824 | 0.060* | |
| H11B | 0.1593 | −0.0221 | 0.9301 | 0.060* | |
| H11C | 0.1192 | −0.1225 | 0.8340 | 0.060* | |
| C12 | 0.02597 (14) | 0.1619 (5) | 0.8796 (5) | 0.0336 (9) | |
| H12A | −0.0003 | 0.2517 | 0.8664 | 0.040* | |
| H12B | 0.0315 | 0.1467 | 0.9845 | 0.040* | |
| C13 | 0.00996 (13) | −0.0174 (5) | 0.8142 (5) | 0.0265 (8) | |
| C14 | −0.02579 (14) | −0.3102 (5) | 0.8631 (5) | 0.0317 (9) | |
| H14A | −0.0295 | −0.3838 | 0.9515 | 0.038* | |
| H14B | 0.0014 | −0.3620 | 0.8063 | 0.038* | |
| C15 | −0.07211 (15) | −0.3255 (5) | 0.7752 (5) | 0.0321 (9) | |
| C16 | −0.07666 (19) | −0.4367 (6) | 0.6583 (6) | 0.0504 (13) | |
| C17 | −0.1212 (2) | −0.4580 (7) | 0.5805 (6) | 0.0593 (16) | |
| H17 | −0.1236 | −0.5374 | 0.5006 | 0.071* | |
| C18 | −0.1600 (2) | −0.3605 (8) | 0.6252 (8) | 0.0618 (16) | |
| H18 | −0.1898 | −0.3701 | 0.5735 | 0.074* | |
| C19 | −0.15798 (19) | −0.2509 (9) | 0.7397 (8) | 0.0635 (16) | |
| H19 | −0.1864 | −0.1850 | 0.7649 | 0.076* | |
| C20 | −0.11537 (14) | −0.2278 (8) | 0.8259 (9) | 0.077 (2) | |
| H20 | −0.1150 | −0.1547 | 0.9099 | 0.093* | |
| F1 | −0.03977 (13) | −0.5300 (6) | 0.6187 (5) | 0.0875 (13) | |
| N1 | 0.19490 (11) | 0.2479 (4) | 0.7068 (4) | 0.0341 (9) | |
| N2 | 0.06857 (10) | 0.3820 (4) | 0.7375 (4) | 0.0281 (7) | |
| N3 | 0.07015 (11) | 0.2262 (4) | 0.8123 (4) | 0.0294 (7) | |
| N4 | −0.01247 (11) | −0.1285 (5) | 0.9057 (4) | 0.0304 (8) | |
| H4A | −0.0193 | −0.0912 | 0.9936 | 0.036* | |
| O1 | 0.22202 (11) | 0.5389 (4) | 0.8089 (4) | 0.0455 (8) | |
| O2 | 0.26539 (10) | 0.4115 (5) | 0.5993 (4) | 0.0522 (9) | |
| O3 | 0.01791 (9) | −0.0534 (4) | 0.6870 (4) | 0.0345 (6) | |
| S1 | 0.22083 (3) | 0.44366 (14) | 0.67509 (13) | 0.0366 (3) |
| C1 | 0.0245 (19) | 0.035 (2) | 0.030 (3) | −0.0034 (15) | −0.0003 (17) | −0.0045 (17) |
| C2 | 0.0277 (19) | 0.041 (2) | 0.041 (3) | −0.0089 (16) | 0.0123 (19) | −0.003 (2) |
| C3 | 0.045 (2) | 0.039 (2) | 0.038 (3) | −0.0113 (19) | 0.003 (2) | 0.008 (2) |
| C4 | 0.037 (2) | 0.032 (2) | 0.055 (3) | −0.0024 (17) | −0.004 (2) | 0.007 (2) |
| C5 | 0.0247 (18) | 0.0297 (19) | 0.044 (3) | −0.0011 (15) | −0.0004 (18) | −0.0020 (19) |
| C6 | 0.0256 (18) | 0.0299 (18) | 0.027 (2) | −0.0046 (15) | 0.0001 (17) | −0.0017 (17) |
| C7 | 0.0202 (15) | 0.0357 (19) | 0.028 (2) | −0.0012 (13) | 0.0007 (17) | −0.0018 (19) |
| C8 | 0.0192 (16) | 0.041 (2) | 0.028 (2) | −0.0003 (15) | −0.0001 (17) | −0.0041 (17) |
| C9 | 0.038 (2) | 0.057 (3) | 0.051 (3) | 0.011 (2) | 0.004 (2) | −0.014 (2) |
| C10 | 0.0257 (18) | 0.0307 (19) | 0.036 (3) | 0.0002 (14) | −0.0043 (17) | −0.0015 (18) |
| C11 | 0.038 (2) | 0.042 (2) | 0.041 (3) | 0.0007 (18) | −0.006 (2) | 0.010 (2) |
| C12 | 0.0290 (19) | 0.038 (2) | 0.033 (3) | −0.0057 (16) | 0.0026 (18) | −0.0058 (19) |
| C13 | 0.0202 (17) | 0.036 (2) | 0.023 (2) | 0.0010 (14) | 0.0011 (16) | 0.0009 (18) |
| C14 | 0.0278 (18) | 0.0296 (19) | 0.038 (3) | −0.0008 (15) | 0.0007 (18) | 0.0023 (18) |
| C15 | 0.037 (2) | 0.035 (2) | 0.024 (2) | −0.0099 (16) | −0.0015 (17) | 0.0037 (17) |
| C16 | 0.058 (3) | 0.050 (3) | 0.044 (3) | −0.003 (2) | 0.004 (3) | 0.003 (2) |
| C17 | 0.092 (4) | 0.056 (3) | 0.030 (3) | −0.029 (3) | −0.018 (3) | 0.006 (2) |
| C18 | 0.047 (3) | 0.070 (4) | 0.069 (4) | −0.018 (3) | −0.008 (3) | 0.022 (3) |
| C19 | 0.043 (3) | 0.074 (4) | 0.073 (5) | −0.004 (3) | −0.011 (3) | 0.015 (4) |
| C20 | 0.019 (2) | 0.072 (3) | 0.141 (7) | −0.013 (2) | −0.021 (3) | 0.068 (4) |
| F1 | 0.063 (2) | 0.117 (3) | 0.082 (3) | 0.011 (2) | −0.0018 (19) | −0.036 (3) |
| N1 | 0.0213 (14) | 0.0416 (18) | 0.039 (2) | 0.0041 (12) | 0.0043 (15) | 0.0026 (17) |
| N2 | 0.0225 (14) | 0.0303 (17) | 0.032 (2) | −0.0024 (12) | 0.0031 (14) | −0.0018 (14) |
| N3 | 0.0235 (15) | 0.0333 (16) | 0.032 (2) | −0.0056 (12) | 0.0006 (14) | 0.0017 (15) |
| N4 | 0.0254 (15) | 0.0374 (17) | 0.028 (2) | −0.0041 (14) | 0.0007 (14) | −0.0031 (15) |
| O1 | 0.0400 (17) | 0.059 (2) | 0.038 (2) | −0.0167 (13) | −0.0096 (15) | −0.0051 (17) |
| O2 | 0.0200 (13) | 0.077 (2) | 0.060 (2) | 0.0022 (14) | 0.0048 (15) | 0.007 (2) |
| O3 | 0.0364 (14) | 0.0427 (15) | 0.0243 (17) | −0.0059 (11) | −0.0004 (14) | 0.0020 (13) |
| S1 | 0.0184 (4) | 0.0516 (6) | 0.0399 (7) | −0.0042 (4) | −0.0017 (4) | 0.0012 (5) |
| C1—C2 | 1.381 (6) | C12—C13 | 1.531 (6) |
| C1—C6 | 1.413 (5) | C12—H12A | 0.9900 |
| C1—S1 | 1.755 (4) | C12—H12B | 0.9900 |
| C2—C3 | 1.383 (7) | C13—O3 | 1.227 (5) |
| C2—H2 | 0.9500 | C13—N4 | 1.335 (5) |
| C3—C4 | 1.391 (6) | C14—N4 | 1.457 (5) |
| C3—H3 | 0.9500 | C14—C15 | 1.514 (6) |
| C4—C5 | 1.380 (7) | C14—H14A | 0.9900 |
| C4—H4 | 0.9500 | C14—H14B | 0.9900 |
| C5—C6 | 1.384 (6) | C15—C16 | 1.369 (7) |
| C5—H5 | 0.9500 | C15—C20 | 1.469 (7) |
| C6—C7 | 1.443 (6) | C16—F1 | 1.282 (6) |
| C7—N2 | 1.339 (5) | C16—C17 | 1.428 (8) |
| C7—C8 | 1.408 (5) | C17—C18 | 1.354 (9) |
| C8—C10 | 1.366 (6) | C17—H17 | 0.9500 |
| C8—N1 | 1.430 (5) | C18—C19 | 1.340 (9) |
| C9—N1 | 1.471 (6) | C18—H18 | 0.9500 |
| C9—H9A | 0.9800 | C19—C20 | 1.425 (8) |
| C9—H9B | 0.9800 | C19—H19 | 0.9500 |
| C9—H9C | 0.9800 | C20—H20 | 0.9500 |
| C10—N3 | 1.360 (5) | N1—S1 | 1.650 (3) |
| C10—C11 | 1.500 (6) | N2—N3 | 1.353 (5) |
| C11—H11A | 0.9800 | N4—H4A | 0.8800 |
| C11—H11B | 0.9800 | O1—S1 | 1.429 (4) |
| C11—H11C | 0.9800 | O2—S1 | 1.430 (3) |
| C12—N3 | 1.444 (5) | ||
| C2—C1—C6 | 121.3 (4) | H12A—C12—H12B | 108.0 |
| C2—C1—S1 | 120.9 (3) | O3—C13—N4 | 123.7 (4) |
| C6—C1—S1 | 117.7 (3) | O3—C13—C12 | 121.3 (4) |
| C1—C2—C3 | 119.2 (4) | N4—C13—C12 | 115.0 (4) |
| C1—C2—H2 | 120.4 | N4—C14—C15 | 115.2 (3) |
| C3—C2—H2 | 120.4 | N4—C14—H14A | 108.5 |
| C2—C3—C4 | 119.8 (4) | C15—C14—H14A | 108.5 |
| C2—C3—H3 | 120.1 | N4—C14—H14B | 108.5 |
| C4—C3—H3 | 120.1 | C15—C14—H14B | 108.5 |
| C5—C4—C3 | 120.9 (4) | H14A—C14—H14B | 107.5 |
| C5—C4—H4 | 119.6 | C16—C15—C20 | 118.6 (5) |
| C3—C4—H4 | 119.6 | C16—C15—C14 | 123.2 (4) |
| C4—C5—C6 | 120.2 (4) | C20—C15—C14 | 118.0 (4) |
| C4—C5—H5 | 119.9 | F1—C16—C15 | 118.9 (5) |
| C6—C5—H5 | 119.9 | F1—C16—C17 | 118.1 (5) |
| C5—C6—C1 | 118.3 (4) | C15—C16—C17 | 123.0 (5) |
| C5—C6—C7 | 123.6 (3) | C18—C17—C16 | 117.4 (5) |
| C1—C6—C7 | 117.8 (3) | C18—C17—H17 | 121.3 |
| N2—C7—C8 | 110.2 (3) | C16—C17—H17 | 121.3 |
| N2—C7—C6 | 124.8 (3) | C19—C18—C17 | 122.4 (6) |
| C8—C7—C6 | 124.8 (3) | C19—C18—H18 | 118.8 |
| C10—C8—C7 | 107.1 (3) | C17—C18—H18 | 118.8 |
| C10—C8—N1 | 128.8 (4) | C18—C19—C20 | 123.4 (6) |
| C7—C8—N1 | 124.1 (4) | C18—C19—H19 | 118.3 |
| N1—C9—H9A | 109.5 | C20—C19—H19 | 118.3 |
| N1—C9—H9B | 109.5 | C19—C20—C15 | 115.1 (7) |
| H9A—C9—H9B | 109.5 | C19—C20—H20 | 122.5 |
| N1—C9—H9C | 109.5 | C15—C20—H20 | 122.5 |
| H9A—C9—H9C | 109.5 | C8—N1—C9 | 117.5 (3) |
| H9B—C9—H9C | 109.5 | C8—N1—S1 | 112.4 (3) |
| N3—C10—C8 | 104.6 (3) | C9—N1—S1 | 119.5 (3) |
| N3—C10—C11 | 122.4 (4) | C7—N2—N3 | 104.3 (3) |
| C8—C10—C11 | 132.9 (4) | N2—N3—C10 | 113.8 (3) |
| C10—C11—H11A | 109.5 | N2—N3—C12 | 118.6 (3) |
| C10—C11—H11B | 109.5 | C10—N3—C12 | 127.6 (3) |
| H11A—C11—H11B | 109.5 | C13—N4—C14 | 121.3 (4) |
| C10—C11—H11C | 109.5 | C13—N4—H4A | 119.3 |
| H11A—C11—H11C | 109.5 | C14—N4—H4A | 119.3 |
| H11B—C11—H11C | 109.5 | O1—S1—O2 | 119.3 (2) |
| N3—C12—C13 | 111.1 (3) | O1—S1—N1 | 107.15 (19) |
| N3—C12—H12A | 109.4 | O2—S1—N1 | 107.9 (2) |
| C13—C12—H12A | 109.4 | O1—S1—C1 | 106.9 (2) |
| N3—C12—H12B | 109.4 | O2—S1—C1 | 109.5 (2) |
| C13—C12—H12B | 109.4 | N1—S1—C1 | 105.23 (17) |
| C6—C1—C2—C3 | 2.2 (7) | C17—C18—C19—C20 | −0.7 (9) |
| S1—C1—C2—C3 | −174.3 (3) | C18—C19—C20—C15 | 3.6 (8) |
| C1—C2—C3—C4 | 2.6 (7) | C16—C15—C20—C19 | −4.1 (7) |
| C2—C3—C4—C5 | −3.7 (7) | C14—C15—C20—C19 | −178.8 (4) |
| C3—C4—C5—C6 | 0.1 (7) | C10—C8—N1—C9 | 60.7 (6) |
| C4—C5—C6—C1 | 4.5 (6) | C7—C8—N1—C9 | −117.5 (5) |
| C4—C5—C6—C7 | −168.7 (4) | C10—C8—N1—S1 | −154.7 (4) |
| C2—C1—C6—C5 | −5.7 (6) | C7—C8—N1—S1 | 27.0 (5) |
| S1—C1—C6—C5 | 170.9 (3) | C8—C7—N2—N3 | −0.8 (5) |
| C2—C1—C6—C7 | 167.9 (4) | C6—C7—N2—N3 | 173.4 (4) |
| S1—C1—C6—C7 | −15.5 (5) | C7—N2—N3—C10 | 1.3 (5) |
| C5—C6—C7—N2 | −10.3 (7) | C7—N2—N3—C12 | 179.1 (4) |
| C1—C6—C7—N2 | 176.5 (4) | C8—C10—N3—N2 | −1.3 (5) |
| C5—C6—C7—C8 | 163.0 (4) | C11—C10—N3—N2 | 179.0 (4) |
| C1—C6—C7—C8 | −10.2 (6) | C8—C10—N3—C12 | −178.9 (4) |
| N2—C7—C8—C10 | 0.0 (5) | C11—C10—N3—C12 | 1.5 (7) |
| C6—C7—C8—C10 | −174.1 (4) | C13—C12—N3—N2 | 116.5 (4) |
| N2—C7—C8—N1 | 178.6 (4) | C13—C12—N3—C10 | −66.1 (6) |
| C6—C7—C8—N1 | 4.5 (7) | O3—C13—N4—C14 | 5.2 (6) |
| C7—C8—C10—N3 | 0.8 (5) | C12—C13—N4—C14 | −174.2 (3) |
| N1—C8—C10—N3 | −177.8 (4) | C15—C14—N4—C13 | −80.3 (5) |
| C7—C8—C10—C11 | −179.7 (5) | C8—N1—S1—O1 | 68.7 (3) |
| N1—C8—C10—C11 | 1.8 (8) | C9—N1—S1—O1 | −147.5 (4) |
| N3—C12—C13—O3 | −31.9 (5) | C8—N1—S1—O2 | −161.6 (3) |
| N3—C12—C13—N4 | 147.6 (3) | C9—N1—S1—O2 | −17.8 (4) |
| N4—C14—C15—C16 | 138.4 (4) | C8—N1—S1—C1 | −44.7 (3) |
| N4—C14—C15—C20 | −47.1 (5) | C9—N1—S1—C1 | 99.0 (4) |
| C20—C15—C16—F1 | −176.0 (5) | C2—C1—S1—O1 | 104.4 (4) |
| C14—C15—C16—F1 | −1.6 (7) | C6—C1—S1—O1 | −72.2 (3) |
| C20—C15—C16—C17 | 2.0 (7) | C2—C1—S1—O2 | −26.1 (4) |
| C14—C15—C16—C17 | 176.4 (4) | C6—C1—S1—O2 | 157.2 (3) |
| F1—C16—C17—C18 | 179.0 (5) | C2—C1—S1—N1 | −141.9 (4) |
| C15—C16—C17—C18 | 0.9 (8) | C6—C1—S1—N1 | 41.5 (4) |
| C16—C17—C18—C19 | −1.6 (8) |
| H··· | ||||
| N4—H4 | 0.88 | 2.09 | 2.940 (5) | 162 |
| C3—H3···O2ii | 0.95 | 2.50 | 3.366 (6) | 152 |
| C14—H14 | 0.99 | 2.53 | 3.202 (6) | 125 |
| C12—H12 | 0.99 | 2.42 | 3.195 (6) | 135 |
| C14—H14 | 0.99 | 2.42 | 2.820 (6) | 103 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N4—H4 | 0.88 | 2.09 | 2.940 (5) | 162 |
| C3—H3⋯O2ii | 0.95 | 2.50 | 3.366 (6) | 152 |
| C14—H14 | 0.99 | 2.53 | 3.202 (6) | 125 |
| C12—H12 | 0.99 | 2.42 | 3.195 (6) | 135 |
| C14—H14 | 0.99 | 2.42 | 2.820 (6) | 103 |
Symmetry codes: (i) ; (ii) ; (iii) .