Literature DB >> 22904901

N-(4-Meth-oxy-benz-yl)phthalimide: a triclinic polymorph.

Hiroki Takahashi1.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: 2-(4-meth-oxy-benz-yl)-isoindoline-1,3-dione], C(16)H(13)NO(3), represents a triclinic polymorph of the previously reported monoclinic form [Warzecha et al. (2006 ▶). Acta Cryst. E62, o5450-o5452]. The reaction of potassium phthalimide and 4-meth-oxy-benzyl chloride in dimethyl-formamide gave platelet-shaped crystals; these were harvested and then needle-shaped crystals were deposited. The platelet- and needle-shaped crystals correspond to the triclinic and monoclinic forms, respectively. The N-C-C(ar)-C(ar) torsion angles between the ring systems are -82.66 (14) and 95.28 (13)°, resulting in a roof-shaped conformation. In the crystal, mol-ecules are accumulated by offset face-face π-π inter-actions between phthalimide units [centroid-centroid distances = 3.640 (2) and 3.651 (2) Å], with inter-planar distances of 3.321 (1) and 3.435 (1) Å. Weak inter-molecular C(ar-yl)-H⋯O=C and C(alk-yl)-H⋯O=C contacts form C(8) and C(11) infinite chain motifs, respectively.

Entities:  

Year:  2012        PMID: 22904901      PMCID: PMC3414914          DOI: 10.1107/S1600536812031376

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the monoclinic form of the title compound, see: Warzecha et al. (2006b ▶). For a photochemical study of the title compound, see: Warzecha, Görner et al. (2006 ▶). For related compounds, see: Lü et al. (2006 ▶); Warzecha et al. (2006a ▶); Chen et al. (2006 ▶). For graph-set motifs, see: Etter (1990 ▶).

Experimental

Crystal data

C16H13NO3 M = 267.27 Triclinic, a = 8.190 (3) Å b = 8.293 (4) Å c = 11.465 (5) Å α = 105.794 (5)° β = 90.8094 (16)° γ = 118.154 (5)° V = 651.3 (5) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.35 × 0.30 × 0.05 mm

Data collection

Rigaku Saturn724+ diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.967, T max = 0.995 6640 measured reflections 2951 independent reflections 2256 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.087 S = 0.96 2951 reflections 212 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku/MSC, 2009 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Yadokari-XG 2009 (Kabuto et al., 2009 ▶), ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812031376/bh2442sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031376/bh2442Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031376/bh2442Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13NO3Z = 2
Mr = 267.27F(000) = 280
Triclinic, P1Dx = 1.363 Mg m3
Hall symbol: -P 1Melting point: 403 K
a = 8.190 (3) ÅMo Kα radiation, λ = 0.71075 Å
b = 8.293 (4) ÅCell parameters from 2075 reflections
c = 11.465 (5) Åθ = 3.1–27.5°
α = 105.794 (5)°µ = 0.10 mm1
β = 90.8094 (16)°T = 100 K
γ = 118.154 (5)°Platelet, colourless
V = 651.3 (5) Å30.35 × 0.30 × 0.05 mm
Rigaku Saturn724+ diffractometer2951 independent reflections
Radiation source: fine-focus sealed tube2256 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.019
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.2°
profile data from ω–scansh = −10→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −10→9
Tmin = 0.967, Tmax = 0.995l = −14→14
6640 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0536P)2] where P = (Fo2 + 2Fc2)/3
2951 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.17 e Å3
0 constraints
xyzUiso*/Ueq
C10.24334 (15)0.63806 (15)0.48690 (9)0.0191 (2)
C20.28334 (14)0.51357 (14)0.54106 (9)0.0171 (2)
C30.38757 (15)0.55798 (16)0.65211 (9)0.0191 (2)
H10.4508 (16)0.6886 (17)0.7095 (11)0.023*
C40.40053 (15)0.40875 (16)0.67783 (10)0.0214 (2)
H20.4719 (16)0.4320 (16)0.7563 (11)0.026*
C50.31087 (16)0.22283 (16)0.59444 (10)0.0233 (3)
H30.3180 (17)0.1217 (18)0.6154 (11)0.028*
C60.20666 (16)0.17978 (16)0.48220 (10)0.0218 (2)
H40.1445 (17)0.0499 (17)0.4223 (11)0.026*
C70.19461 (14)0.32803 (15)0.45735 (9)0.0185 (2)
C80.09817 (15)0.32978 (15)0.34721 (9)0.0204 (2)
C90.07198 (16)0.58653 (18)0.28326 (10)0.0234 (2)
H5−0.0527 (18)0.4833 (17)0.2403 (11)0.028*
H60.0580 (17)0.6973 (18)0.3337 (12)0.028*
C100.20838 (15)0.64133 (16)0.19466 (9)0.0206 (2)
C110.36928 (16)0.82062 (16)0.22606 (10)0.0222 (2)
H70.3937 (17)0.9133 (17)0.3059 (11)0.027*
C120.49800 (16)0.86831 (16)0.14608 (10)0.0216 (2)
H80.6131 (17)0.9974 (17)0.1698 (11)0.026*
C130.46131 (15)0.73395 (16)0.03122 (9)0.0198 (2)
C140.30067 (16)0.55359 (16)−0.00133 (10)0.0229 (2)
H90.2783 (16)0.4566 (17)−0.0834 (11)0.027*
C150.17604 (16)0.50759 (17)0.08016 (10)0.0227 (2)
H100.0627 (17)0.3755 (17)0.0568 (11)0.027*
C160.75343 (15)0.93637 (17)−0.02176 (10)0.0277 (3)
H110.73681.0498−0.00190.042*
H120.82460.9363−0.08970.042*
H130.82220.94020.05050.042*
O10.29209 (11)0.80774 (11)0.52998 (7)0.0264 (2)
O20.00784 (11)0.19931 (11)0.25296 (7)0.0285 (2)
N10.13193 (13)0.51842 (13)0.37221 (8)0.0202 (2)
O30.57369 (10)0.76553 (11)−0.05703 (7)0.0243 (2)
U11U22U33U12U13U23
C10.0172 (5)0.0215 (6)0.0175 (5)0.0096 (5)0.0056 (4)0.0045 (4)
C20.0151 (5)0.0175 (5)0.0180 (5)0.0078 (4)0.0063 (4)0.0048 (4)
C30.0169 (5)0.0202 (6)0.0178 (5)0.0088 (5)0.0042 (4)0.0030 (4)
C40.0186 (5)0.0276 (6)0.0198 (5)0.0123 (5)0.0056 (4)0.0084 (5)
C50.0238 (6)0.0232 (6)0.0282 (6)0.0137 (5)0.0094 (5)0.0120 (5)
C60.0211 (6)0.0172 (5)0.0236 (6)0.0076 (5)0.0067 (4)0.0044 (4)
C70.0148 (5)0.0193 (5)0.0175 (5)0.0065 (4)0.0049 (4)0.0040 (4)
C80.0169 (5)0.0221 (6)0.0184 (5)0.0076 (5)0.0067 (4)0.0045 (4)
C90.0221 (6)0.0316 (6)0.0214 (5)0.0159 (5)0.0047 (5)0.0106 (5)
C100.0203 (5)0.0285 (6)0.0184 (5)0.0154 (5)0.0025 (4)0.0090 (4)
C110.0263 (6)0.0250 (6)0.0169 (5)0.0152 (5)0.0019 (4)0.0041 (4)
C120.0213 (6)0.0208 (6)0.0204 (5)0.0096 (5)0.0003 (4)0.0050 (4)
C130.0193 (5)0.0267 (6)0.0165 (5)0.0134 (5)0.0025 (4)0.0078 (4)
C140.0222 (6)0.0250 (6)0.0175 (5)0.0108 (5)0.0003 (4)0.0027 (4)
C150.0191 (6)0.0249 (6)0.0209 (5)0.0089 (5)0.0002 (4)0.0066 (5)
C160.0189 (6)0.0330 (7)0.0234 (6)0.0078 (5)0.0035 (4)0.0071 (5)
O10.0311 (5)0.0211 (4)0.0262 (4)0.0144 (4)0.0032 (3)0.0038 (3)
O20.0278 (4)0.0271 (4)0.0186 (4)0.0086 (4)−0.0012 (3)−0.0008 (3)
N10.0211 (5)0.0227 (5)0.0171 (4)0.0111 (4)0.0040 (4)0.0058 (4)
O30.0196 (4)0.0284 (4)0.0173 (4)0.0073 (3)0.0034 (3)0.0049 (3)
C1—O11.2122 (14)C9—H50.974 (13)
C1—N11.3956 (14)C9—H61.001 (13)
C1—C21.4903 (16)C10—C111.3867 (16)
C2—C31.3795 (15)C10—C151.3942 (15)
C2—C71.3921 (15)C11—C121.3928 (16)
C3—C41.3969 (16)C11—H70.967 (12)
C3—H10.974 (12)C12—C131.3929 (15)
C4—C51.3928 (16)C12—H80.995 (12)
C4—H20.987 (12)C13—O31.3720 (13)
C5—C61.3940 (17)C13—C141.3902 (16)
C5—H30.959 (13)C14—C151.3834 (15)
C6—C71.3808 (16)C14—H91.005 (12)
C6—H40.980 (12)C15—H101.004 (12)
C7—C81.4871 (16)C16—O31.4286 (14)
C8—O21.2129 (13)C16—H110.9800
C8—N11.3970 (16)C16—H120.9800
C9—N11.4701 (14)C16—H130.9800
C9—C101.5135 (15)
O1—C1—N1124.83 (10)H5—C9—H6107.4 (10)
O1—C1—C2129.26 (10)C11—C10—C15118.74 (10)
N1—C1—C2105.90 (9)C11—C10—C9121.47 (10)
C3—C2—C7121.69 (10)C15—C10—C9119.76 (11)
C3—C2—C1130.35 (10)C10—C11—C12121.38 (10)
C7—C2—C1107.96 (10)C10—C11—H7119.2 (7)
C2—C3—C4117.31 (10)C12—C11—H7119.4 (7)
C2—C3—H1121.1 (7)C11—C12—C13118.97 (11)
C4—C3—H1121.5 (7)C11—C12—H8120.6 (7)
C5—C4—C3121.03 (11)C13—C12—H8120.4 (7)
C5—C4—H2118.2 (7)O3—C13—C14115.20 (9)
C3—C4—H2120.8 (7)O3—C13—C12124.59 (10)
C4—C5—C6121.18 (11)C14—C13—C12120.21 (10)
C4—C5—H3119.5 (7)C15—C14—C13119.99 (10)
C6—C5—H3119.3 (8)C15—C14—H9120.7 (7)
C7—C6—C5117.47 (10)C13—C14—H9119.3 (7)
C7—C6—H4120.6 (7)C14—C15—C10120.69 (11)
C5—C6—H4121.9 (7)C14—C15—H10119.3 (7)
C6—C7—C2121.32 (11)C10—C15—H10120.0 (7)
C6—C7—C8130.48 (10)O3—C16—H11109.5
C2—C7—C8108.19 (10)O3—C16—H12109.5
O2—C8—N1124.84 (11)H11—C16—H12109.5
O2—C8—C7129.29 (11)O3—C16—H13109.5
N1—C8—C7105.88 (9)H11—C16—H13109.5
N1—C9—C10112.27 (9)H12—C16—H13109.5
N1—C9—H5106.8 (7)C1—N1—C8112.06 (9)
C10—C9—H5111.5 (7)C1—N1—C9123.97 (10)
N1—C9—H6105.7 (7)C8—N1—C9123.73 (9)
C10—C9—H6112.7 (7)C13—O3—C16117.23 (8)
O1—C1—C2—C3−1.23 (19)C9—C10—C11—C12177.70 (10)
N1—C1—C2—C3179.51 (10)C10—C11—C12—C131.45 (17)
O1—C1—C2—C7179.10 (10)C11—C12—C13—O3177.89 (9)
N1—C1—C2—C7−0.17 (11)C11—C12—C13—C14−1.53 (16)
C7—C2—C3—C4−0.16 (15)O3—C13—C14—C15−179.04 (10)
C1—C2—C3—C4−179.80 (10)C12—C13—C14—C150.44 (17)
C2—C3—C4—C5−0.22 (15)C13—C14—C15—C100.78 (17)
C3—C4—C5—C60.56 (17)C11—C10—C15—C14−0.87 (16)
C4—C5—C6—C7−0.48 (16)C9—C10—C15—C14−178.86 (10)
C5—C6—C7—C20.09 (16)O1—C1—N1—C8−179.86 (10)
C5—C6—C7—C8179.06 (10)C2—C1—N1—C8−0.56 (11)
C3—C2—C7—C60.23 (16)O1—C1—N1—C95.55 (16)
C1—C2—C7—C6179.94 (9)C2—C1—N1—C9−175.15 (9)
C3—C2—C7—C8−178.94 (9)O2—C8—N1—C1−178.80 (10)
C1—C2—C7—C80.77 (11)C7—C8—N1—C11.01 (11)
C6—C7—C8—O2−0.35 (19)O2—C8—N1—C9−4.19 (16)
C2—C7—C8—O2178.72 (10)C7—C8—N1—C9175.62 (9)
C6—C7—C8—N1179.84 (10)C10—C9—N1—C191.16 (12)
C2—C7—C8—N1−1.09 (11)C10—C9—N1—C8−82.81 (13)
N1—C9—C10—C11−82.66 (14)C14—C13—O3—C16−170.86 (10)
N1—C9—C10—C1595.28 (13)C12—C13—O3—C169.69 (15)
C15—C10—C11—C12−0.26 (16)
D—H···AD—HH···AD···AD—H···A
C5—H3···O1i0.959 (14)2.422 (14)3.245 (2)143.7 (10)
C16—H13···O2ii0.982.533.287 (2)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H3⋯O1i 0.959 (14)2.422 (14)3.245 (2)143.7 (10)
C16—H13⋯O2ii 0.982.533.287 (2)134

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Photoinduced decarboxylative benzylation of phthalimide triplets with phenyl acetates: a mechanistic study.

Authors:  Klaus-Dieter Warzecha; Helmut Görner; Axel G Griesbeck
Journal:  J Phys Chem A       Date:  2006-03-16       Impact factor: 2.781

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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