| Literature DB >> 22904894 |
Lerato P Ntsala1, Andreas Lemmerer.
Abstract
In the title compound, C(6)H(7)N(3)O, the amide group is rotated such that the carbonyl O atom is syn to the pyridine N atom, with an O-C-C-C torsion angle of -23.55 (18)°. The crystal packing involves four hydrogen bonds of the types N-H⋯N and N-H⋯O. Two separate centrosymmetric rings are formed using N-H⋯N and N-H⋯O hydrogen bonds that result in a ribbon of 6-aminonicotinamide molecules, joined by the amide and amine functional groups. The remaining two hydrogen bonds are used to generate a three-dimensional packing arrangement.Entities:
Year: 2012 PMID: 22904894 PMCID: PMC3414361 DOI: 10.1107/S1600536812031224
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1574 reflections |
| θ = 2.9–28.4° | |
| µ = 0.1 mm−1 | |
| β = 99.215 (2)° | Cube, colourless |
| 0.27 × 0.25 × 0.2 mm | |
| Bruker APEXII CCD area-detector diffractometer | 1300 reflections with |
| ω scans | |
| Absorption correction: multi-scan ( | θmax = 28°, θmin = 2.9° |
| 4078 measured reflections | |
| 1582 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.33 e Å−3 | |
| 1582 reflections | Δρmin = −0.21 e Å−3 |
| 107 parameters |
| Experimental. Absorption corrections were made using the program |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| C1 | 0.21465 (8) | 0.3830 (3) | 0.06966 (12) | 0.0216 (3) | |
| C2 | 0.28897 (8) | 0.3112 (3) | 0.00180 (12) | 0.0227 (3) | |
| H2 | 0.279 | 0.1654 | −0.0651 | 0.027* | |
| C3 | 0.38732 (8) | 0.6424 (2) | 0.11660 (12) | 0.0212 (3) | |
| C4 | 0.31587 (9) | 0.7304 (3) | 0.19125 (13) | 0.0246 (3) | |
| H4 | 0.3271 | 0.878 | 0.257 | 0.03* | |
| C5 | 0.22979 (9) | 0.5994 (3) | 0.16746 (13) | 0.0242 (3) | |
| H5 | 0.1808 | 0.6552 | 0.217 | 0.029* | |
| C6 | 0.12477 (8) | 0.2249 (3) | 0.03728 (12) | 0.0235 (3) | |
| N1 | 0.06896 (8) | 0.2202 (3) | 0.13454 (12) | 0.0315 (3) | |
| H1S | 0.0150 (13) | 0.121 (3) | 0.1119 (18) | 0.037 (4)* | |
| H1A | 0.0869 (12) | 0.292 (3) | 0.219 (2) | 0.036 (4)* | |
| N2 | 0.37410 (7) | 0.4326 (2) | 0.02370 (11) | 0.0232 (3) | |
| N3 | 0.47474 (8) | 0.7598 (2) | 0.14074 (13) | 0.0275 (3) | |
| H3S | 0.5162 (12) | 0.710 (4) | 0.0824 (19) | 0.037 (4)* | |
| H3A | 0.4816 (12) | 0.918 (3) | 0.1855 (18) | 0.034 (4)* | |
| O1 | 0.10436 (6) | 0.0996 (2) | −0.07631 (9) | 0.0295 (3) |
| C1 | 0.0207 (5) | 0.0269 (6) | 0.0175 (5) | −0.0015 (4) | 0.0042 (4) | 0.0035 (4) |
| C2 | 0.0232 (6) | 0.0257 (6) | 0.0194 (6) | −0.0029 (5) | 0.0045 (4) | −0.0017 (5) |
| C3 | 0.0206 (6) | 0.0219 (6) | 0.0208 (6) | −0.0007 (4) | 0.0027 (4) | 0.0028 (4) |
| C4 | 0.0275 (6) | 0.0239 (6) | 0.0229 (6) | −0.0008 (5) | 0.0058 (5) | −0.0034 (5) |
| C5 | 0.0234 (6) | 0.0281 (6) | 0.0223 (6) | 0.0026 (5) | 0.0078 (5) | 0.0010 (5) |
| C6 | 0.0203 (6) | 0.0320 (6) | 0.0185 (6) | −0.0012 (5) | 0.0039 (4) | 0.0023 (5) |
| N1 | 0.0246 (6) | 0.0497 (7) | 0.0219 (6) | −0.0122 (5) | 0.0086 (4) | −0.0067 (5) |
| N2 | 0.0219 (5) | 0.0260 (5) | 0.0224 (5) | −0.0017 (4) | 0.0061 (4) | −0.0017 (4) |
| N3 | 0.0229 (6) | 0.0275 (6) | 0.0329 (6) | −0.0045 (4) | 0.0068 (4) | −0.0066 (5) |
| O1 | 0.0250 (5) | 0.0451 (6) | 0.0190 (5) | −0.0094 (4) | 0.0057 (3) | −0.0040 (4) |
| C1—C2 | 1.3824 (17) | C4—H4 | 0.95 |
| C1—C5 | 1.4004 (17) | C5—H5 | 0.95 |
| C1—C6 | 1.4870 (16) | C6—O1 | 1.2461 (15) |
| C2—N2 | 1.3401 (15) | C6—N1 | 1.3293 (16) |
| C2—H2 | 0.95 | N1—H1S | 0.907 (18) |
| C3—N2 | 1.3449 (15) | N1—H1A | 0.888 (18) |
| C3—N3 | 1.3614 (15) | N3—H3S | 0.915 (18) |
| C3—C4 | 1.4100 (17) | N3—H3A | 0.875 (17) |
| C4—C5 | 1.3730 (17) | ||
| C2—C1—C5 | 117.29 (11) | C4—C5—H5 | 120.2 |
| C2—C1—C6 | 118.75 (11) | C1—C5—H5 | 120.2 |
| C5—C1—C6 | 123.95 (11) | O1—C6—N1 | 122.15 (12) |
| N2—C2—C1 | 124.66 (11) | O1—C6—C1 | 120.45 (11) |
| N2—C2—H2 | 117.7 | N1—C6—C1 | 117.39 (11) |
| C1—C2—H2 | 117.7 | C6—N1—H1S | 115.2 (11) |
| N2—C3—N3 | 116.99 (11) | C6—N1—H1A | 121.9 (11) |
| N2—C3—C4 | 122.08 (11) | H1S—N1—H1A | 122.5 (16) |
| N3—C3—C4 | 120.87 (11) | C2—N2—C3 | 117.43 (10) |
| C5—C4—C3 | 118.99 (11) | C3—N3—H3S | 117.2 (11) |
| C5—C4—H4 | 120.5 | C3—N3—H3A | 118.4 (11) |
| C3—C4—H4 | 120.5 | H3S—N3—H3A | 120.1 (15) |
| C4—C5—C1 | 119.53 (11) | ||
| C5—C1—C2—N2 | 0.43 (19) | C2—C1—C6—O1 | −23.55 (18) |
| C6—C1—C2—N2 | −178.45 (11) | C5—C1—C6—O1 | 157.66 (12) |
| N2—C3—C4—C5 | −0.61 (19) | C2—C1—C6—N1 | 155.44 (12) |
| N3—C3—C4—C5 | −177.58 (11) | C5—C1—C6—N1 | −23.36 (18) |
| C3—C4—C5—C1 | −0.24 (18) | C1—C2—N2—C3 | −1.24 (18) |
| C2—C1—C5—C4 | 0.34 (18) | N3—C3—N2—C2 | 178.40 (11) |
| C6—C1—C5—C4 | 179.15 (11) | C4—C3—N2—C2 | 1.31 (18) |
| H··· | ||||
| N1—H1 | 0.888 (18) | 2.021 (19) | 2.8933 (15) | 167.2 (15) |
| N1—H1 | 0.907 (18) | 1.997 (19) | 2.9024 (14) | 176.0 (16) |
| N3—H3 | 0.915 (18) | 2.125 (19) | 3.0322 (15) | 170.9 (15) |
| N3—H3 | 0.875 (17) | 2.363 (17) | 3.2083 (16) | 162.7 (15) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.888 (18) | 2.021 (19) | 2.8933 (15) | 167.2 (15) |
| N1—H1 | 0.907 (18) | 1.997 (19) | 2.9024 (14) | 176.0 (16) |
| N3—H3 | 0.915 (18) | 2.125 (19) | 3.0322 (15) | 170.9 (15) |
| N3—H3 | 0.875 (17) | 2.363 (17) | 3.2083 (16) | 162.7 (15) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .