Literature DB >> 22904894

6-Amino-nicotinamide.

Lerato P Ntsala1, Andreas Lemmerer.   

Abstract

In the title compound, C(6)H(7)N(3)O, the amide group is rotated such that the carbonyl O atom is syn to the pyridine N atom, with an O-C-C-C torsion angle of -23.55 (18)°. The crystal packing involves four hydrogen bonds of the types N-H⋯N and N-H⋯O. Two separate centrosymmetric rings are formed using N-H⋯N and N-H⋯O hydrogen bonds that result in a ribbon of 6-aminonicotinamide molecules, joined by the amide and amine functional groups. The remaining two hydrogen bonds are used to generate a three-dimensional packing arrangement.

Entities:  

Year:  2012        PMID: 22904894      PMCID: PMC3414361          DOI: 10.1107/S1600536812031224

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological activity, see: Street et al. (1997 ▶); Budihardjo et al. (2000 ▶). For structurally related compounds, see: Miwa et al. (1999 ▶); Li et al. (2011 ▶).

Experimental

Crystal data

C6H7N3O M = 137.15 Monoclinic, a = 14.3483 (6) Å b = 4.8143 (2) Å c = 9.6685 (4) Å β = 99.215 (2)° V = 659.25 (5) Å3 Z = 4 Mo Kα radiation μ = 0.1 mm−1 T = 173 K 0.27 × 0.25 × 0.2 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.974, T max = 0.980 4078 measured reflections 1582 independent reflections 1300 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.113 S = 1.03 1582 reflections 107 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812031224/fj2584sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812031224/fj2584Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812031224/fj2584Isup3.mol Supplementary material file. DOI: 10.1107/S1600536812031224/fj2584Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N3OF(000) = 288
Mr = 137.15Dx = 1.382 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1574 reflections
a = 14.3483 (6) Åθ = 2.9–28.4°
b = 4.8143 (2) ŵ = 0.1 mm1
c = 9.6685 (4) ÅT = 173 K
β = 99.215 (2)°Cube, colourless
V = 659.25 (5) Å30.27 × 0.25 × 0.2 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer1300 reflections with I > 2σ(I)
ω scansRint = 0.037
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)θmax = 28°, θmin = 2.9°
Tmin = 0.974, Tmax = 0.980h = −18→18
4078 measured reflectionsk = −6→6
1582 independent reflectionsl = −11→12
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.040w = 1/[σ2(Fo2) + (0.0577P)2 + 0.1618P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.113(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.33 e Å3
1582 reflectionsΔρmin = −0.21 e Å3
107 parameters
Experimental. Absorption corrections were made using the program SADABS (Sheldrick, 1996)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.21465 (8)0.3830 (3)0.06966 (12)0.0216 (3)
C20.28897 (8)0.3112 (3)0.00180 (12)0.0227 (3)
H20.2790.1654−0.06510.027*
C30.38732 (8)0.6424 (2)0.11660 (12)0.0212 (3)
C40.31587 (9)0.7304 (3)0.19125 (13)0.0246 (3)
H40.32710.8780.2570.03*
C50.22979 (9)0.5994 (3)0.16746 (13)0.0242 (3)
H50.18080.65520.2170.029*
C60.12477 (8)0.2249 (3)0.03728 (12)0.0235 (3)
N10.06896 (8)0.2202 (3)0.13454 (12)0.0315 (3)
H1S0.0150 (13)0.121 (3)0.1119 (18)0.037 (4)*
H1A0.0869 (12)0.292 (3)0.219 (2)0.036 (4)*
N20.37410 (7)0.4326 (2)0.02370 (11)0.0232 (3)
N30.47474 (8)0.7598 (2)0.14074 (13)0.0275 (3)
H3S0.5162 (12)0.710 (4)0.0824 (19)0.037 (4)*
H3A0.4816 (12)0.918 (3)0.1855 (18)0.034 (4)*
O10.10436 (6)0.0996 (2)−0.07631 (9)0.0295 (3)
U11U22U33U12U13U23
C10.0207 (5)0.0269 (6)0.0175 (5)−0.0015 (4)0.0042 (4)0.0035 (4)
C20.0232 (6)0.0257 (6)0.0194 (6)−0.0029 (5)0.0045 (4)−0.0017 (5)
C30.0206 (6)0.0219 (6)0.0208 (6)−0.0007 (4)0.0027 (4)0.0028 (4)
C40.0275 (6)0.0239 (6)0.0229 (6)−0.0008 (5)0.0058 (5)−0.0034 (5)
C50.0234 (6)0.0281 (6)0.0223 (6)0.0026 (5)0.0078 (5)0.0010 (5)
C60.0203 (6)0.0320 (6)0.0185 (6)−0.0012 (5)0.0039 (4)0.0023 (5)
N10.0246 (6)0.0497 (7)0.0219 (6)−0.0122 (5)0.0086 (4)−0.0067 (5)
N20.0219 (5)0.0260 (5)0.0224 (5)−0.0017 (4)0.0061 (4)−0.0017 (4)
N30.0229 (6)0.0275 (6)0.0329 (6)−0.0045 (4)0.0068 (4)−0.0066 (5)
O10.0250 (5)0.0451 (6)0.0190 (5)−0.0094 (4)0.0057 (3)−0.0040 (4)
C1—C21.3824 (17)C4—H40.95
C1—C51.4004 (17)C5—H50.95
C1—C61.4870 (16)C6—O11.2461 (15)
C2—N21.3401 (15)C6—N11.3293 (16)
C2—H20.95N1—H1S0.907 (18)
C3—N21.3449 (15)N1—H1A0.888 (18)
C3—N31.3614 (15)N3—H3S0.915 (18)
C3—C41.4100 (17)N3—H3A0.875 (17)
C4—C51.3730 (17)
C2—C1—C5117.29 (11)C4—C5—H5120.2
C2—C1—C6118.75 (11)C1—C5—H5120.2
C5—C1—C6123.95 (11)O1—C6—N1122.15 (12)
N2—C2—C1124.66 (11)O1—C6—C1120.45 (11)
N2—C2—H2117.7N1—C6—C1117.39 (11)
C1—C2—H2117.7C6—N1—H1S115.2 (11)
N2—C3—N3116.99 (11)C6—N1—H1A121.9 (11)
N2—C3—C4122.08 (11)H1S—N1—H1A122.5 (16)
N3—C3—C4120.87 (11)C2—N2—C3117.43 (10)
C5—C4—C3118.99 (11)C3—N3—H3S117.2 (11)
C5—C4—H4120.5C3—N3—H3A118.4 (11)
C3—C4—H4120.5H3S—N3—H3A120.1 (15)
C4—C5—C1119.53 (11)
C5—C1—C2—N20.43 (19)C2—C1—C6—O1−23.55 (18)
C6—C1—C2—N2−178.45 (11)C5—C1—C6—O1157.66 (12)
N2—C3—C4—C5−0.61 (19)C2—C1—C6—N1155.44 (12)
N3—C3—C4—C5−177.58 (11)C5—C1—C6—N1−23.36 (18)
C3—C4—C5—C1−0.24 (18)C1—C2—N2—C3−1.24 (18)
C2—C1—C5—C40.34 (18)N3—C3—N2—C2178.40 (11)
C6—C1—C5—C4179.15 (11)C4—C3—N2—C21.31 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.888 (18)2.021 (19)2.8933 (15)167.2 (15)
N1—H1S···O1ii0.907 (18)1.997 (19)2.9024 (14)176.0 (16)
N3—H3S···N2iii0.915 (18)2.125 (19)3.0322 (15)170.9 (15)
N3—H3A···N3iv0.875 (17)2.363 (17)3.2083 (16)162.7 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.888 (18)2.021 (19)2.8933 (15)167.2 (15)
N1—H1S⋯O1ii 0.907 (18)1.997 (19)2.9024 (14)176.0 (16)
N3—H3S⋯N2iii 0.915 (18)2.125 (19)3.0322 (15)170.9 (15)
N3—H3A⋯N3iv 0.875 (17)2.363 (17)3.2083 (16)162.7 (15)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  Effect of 6-aminonicotinamide and other protein synthesis inhibitors on formation of platinum-DNA adducts and cisplatin sensitivity.

Authors:  I I Budihardjo; S A Boerner; S Eckdahl; P A Svingen; R Rios; M M Ames; S H Kaufmann
Journal:  Mol Pharmacol       Date:  2000-03       Impact factor: 4.436

2.  New polymorphs of isonicotinamide and nicotinamide.

Authors:  Jinjing Li; Susan A Bourne; Mino R Caira
Journal:  Chem Commun (Camb)       Date:  2010-11-19       Impact factor: 6.222

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Quantitation of metabolic and radiobiological effects of 6-aminonicotinamide in RIF-1 tumor cells in vitro.

Authors:  J C Street; A A Alfieri; J A Koutcher
Journal:  Cancer Res       Date:  1997-09-15       Impact factor: 12.701

5.  Experimental charge density and electrostatic potential in nicotinamide.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-02-01

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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