Literature DB >> 22904893

(2RS)-2-(2,4-Difluoro-phen-yl)-1-[(4-iodo-benz-yl)(meth-yl)amino]-3-(1H-1,2,4-tri-azol-1-yl)propan-2-ol.

Hui-Ping Xiong, Shou-Hong Gao, Chun-Tong Li, Zhi-Jun Wu.   

Abstract

IN THE TITLE COMPOUND (COMMON NAME: iodiconazole), C(19)H(19)F(2)IN(4)O, there is an intra-molecular O-H⋯N hydrogen bond and mol-ecules are linked by weak inter-actions only, namely C-H⋯N, C-H⋯O and C-H⋯F hydrogen bonds, and π-electron ring-π-electron ring inter-actions between the triazole rings with centroid-centroid distances of 3.725 (3) Å.

Entities:  

Year:  2012        PMID: 22904893      PMCID: PMC3414360          DOI: 10.1107/S160053681203139X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of azole compounds, see Fromtling (1988 ▶); Gallagher et al. (2003 ▶). For a liquid chromatography-tandem mass spectrometry (LC-MS/MS) assay for determination of trace amounts of iodiconazole in human plasma, see Gao et al. (2009 ▶). For an ultra-fast LC method for the determination of iodiconazole in microdialysis samples and its application in the calibration of laboratory-made linear probes, see Sun et al. (2010 ▶). For the high-performance liquid chromatographic (HPLC) determination of iodiconazole in rat plasma, see Wen et al. (2007 ▶). For the synthesis of iodiconazole, see Sheng et al. (2002 ▶); Zhang et al. (2001 ▶). For classification of the hydrogen bonds, see Gilli & Gilli (2009 ▶).

Experimental

Crystal data

C19H19F2IN4O M = 484.28 Monoclinic, a = 34.398 (14) Å b = 5.812 (2) Å c = 21.619 (9) Å β = 114.895 (5)° V = 3921 (3) Å3 Z = 8 Mo Kα radiation μ = 1.67 mm−1 T = 293 K 0.30 × 0.25 × 0.25 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.635, T max = 0.681 8473 measured reflections 3929 independent reflections 3441 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.103 S = 1.07 3929 reflections 249 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.66 e Å−3 Δρmin = −0.89 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681203139X/fb2257sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203139X/fb2257Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203139X/fb2257Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19F2IN4OF(000) = 1920
Mr = 484.28Dx = 1.641 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 935 reflections
a = 34.398 (14) Åθ = 2.4–27.3°
b = 5.812 (2) ŵ = 1.67 mm1
c = 21.619 (9) ÅT = 293 K
β = 114.895 (5)°Prism, colourless
V = 3921 (3) Å30.30 × 0.25 × 0.25 mm
Z = 8
Bruker SMART APEX diffractometer3929 independent reflections
Radiation source: fine-focus sealed tube3441 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
ω scansθmax = 26.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −42→37
Tmin = 0.635, Tmax = 0.681k = −7→6
8473 measured reflectionsl = −20→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0625P)2 + 1.2617P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
3929 reflectionsΔρmax = 0.66 e Å3
249 parametersΔρmin = −0.89 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
72 constraintsExtinction coefficient: 0.0042 (2)
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ (F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.039478 (7)0.71329 (5)1.084656 (12)0.05727 (14)
O10.14979 (9)0.4892 (4)0.86484 (13)0.0526 (6)
H10.1635 (13)0.562 (7)0.8990 (16)0.079*
F10.12653 (7)1.0421 (3)0.72386 (10)0.0579 (5)
F20.21734 (8)0.6966 (5)0.64091 (13)0.0730 (7)
N10.18407 (7)0.8775 (4)0.92893 (12)0.0381 (5)
N20.06131 (9)0.6265 (5)0.81152 (15)0.0512 (7)
N30.02469 (12)0.4885 (7)0.8643 (2)0.0786 (11)
N40.04556 (10)0.8147 (6)0.8307 (2)0.0631 (9)
C10.08547 (10)0.8148 (6)1.04983 (16)0.0428 (7)
C20.11877 (10)0.6647 (5)1.05788 (17)0.0432 (7)
H2A0.12020.52071.07750.052*
C30.14984 (11)0.7318 (5)1.03632 (17)0.0423 (7)
H3A0.17220.63191.04210.051*
C40.14813 (9)0.9441 (5)1.00639 (15)0.0388 (6)
C50.11418 (11)1.0879 (5)0.99801 (16)0.0451 (7)
H5A0.11221.22980.97690.054*
C60.08326 (10)1.0275 (6)1.01995 (17)0.0486 (7)
H6A0.06121.12881.01470.058*
C70.18278 (10)1.0181 (5)0.98510 (15)0.0432 (7)
H7A0.17821.17780.97080.052*
H7B0.21031.00781.02420.052*
C80.22209 (10)0.9452 (7)0.91844 (18)0.0532 (8)
H8A0.22390.85280.88290.080*
H8B0.24740.92260.95990.080*
H8C0.21981.10450.90560.080*
C90.14435 (9)0.9017 (5)0.86661 (15)0.0383 (6)
H9A0.14641.03590.84150.046*
H9B0.12050.92480.87870.046*
C100.13590 (9)0.6840 (5)0.82054 (16)0.0378 (6)
C110.15886 (9)0.6898 (5)0.77369 (15)0.0375 (6)
C120.18560 (10)0.5119 (5)0.77230 (17)0.0471 (7)
H12A0.19030.38850.80200.056*
C130.20542 (11)0.5125 (6)0.72800 (19)0.0535 (8)
H13A0.22320.39170.72800.064*
C140.19842 (11)0.6929 (6)0.68468 (18)0.0490 (8)
C150.17194 (11)0.8736 (6)0.68202 (16)0.0473 (7)
H15A0.16710.99490.65160.057*
C160.15292 (9)0.8656 (5)0.72667 (15)0.0392 (6)
C170.08801 (11)0.6515 (6)0.77506 (18)0.0499 (8)
H17A0.07790.78280.74480.060*
H17B0.08450.51600.74700.060*
C180.02440 (14)0.7188 (9)0.8626 (3)0.0735 (13)
H18A0.01010.80590.88270.088*
C190.04840 (13)0.4356 (8)0.8317 (2)0.0675 (11)
H19A0.05510.28660.82390.081*
U11U22U33U12U13U23
I10.04130 (16)0.0808 (2)0.05347 (18)−0.01084 (10)0.02357 (12)−0.00551 (11)
O10.0739 (16)0.0366 (11)0.0525 (14)−0.0017 (11)0.0318 (13)0.0096 (10)
F10.0711 (12)0.0534 (11)0.0545 (11)0.0266 (10)0.0318 (10)0.0207 (9)
F20.0674 (15)0.1079 (19)0.0620 (14)−0.0039 (13)0.0450 (13)−0.0128 (13)
N10.0346 (12)0.0465 (13)0.0348 (12)−0.0034 (10)0.0161 (10)0.0018 (10)
N20.0443 (15)0.0601 (16)0.0555 (17)−0.0121 (13)0.0270 (14)−0.0102 (14)
N30.069 (2)0.095 (3)0.092 (3)−0.020 (2)0.054 (2)−0.009 (2)
N40.0486 (17)0.067 (2)0.078 (2)−0.0083 (14)0.0309 (17)−0.0192 (17)
C10.0370 (15)0.0553 (18)0.0365 (15)−0.0055 (13)0.0159 (13)−0.0072 (13)
C20.0497 (17)0.0382 (15)0.0451 (17)−0.0023 (12)0.0232 (15)0.0025 (12)
C30.0460 (17)0.0410 (15)0.0448 (17)0.0051 (12)0.0241 (15)0.0024 (13)
C40.0432 (15)0.0389 (15)0.0341 (14)−0.0047 (12)0.0160 (12)−0.0046 (11)
C50.0547 (17)0.0373 (15)0.0426 (17)0.0024 (13)0.0198 (14)0.0048 (13)
C60.0446 (16)0.0522 (18)0.0471 (18)0.0099 (14)0.0174 (14)0.0009 (14)
C70.0460 (15)0.0450 (16)0.0392 (16)−0.0108 (13)0.0184 (13)−0.0038 (13)
C80.0389 (15)0.074 (2)0.0492 (19)−0.0104 (15)0.0214 (14)0.0001 (17)
C90.0384 (14)0.0405 (15)0.0380 (15)0.0016 (12)0.0179 (12)0.0011 (12)
C100.0399 (15)0.0367 (14)0.0394 (16)−0.0013 (11)0.0192 (13)0.0020 (12)
C110.0396 (15)0.0373 (14)0.0350 (15)−0.0014 (11)0.0152 (13)0.0002 (11)
C120.0521 (17)0.0379 (15)0.0497 (18)0.0068 (13)0.0200 (15)0.0032 (13)
C130.0469 (17)0.0555 (19)0.060 (2)0.0086 (14)0.0242 (16)−0.0091 (16)
C140.0409 (17)0.069 (2)0.0398 (17)−0.0059 (15)0.0197 (14)−0.0122 (15)
C150.0487 (17)0.0569 (18)0.0345 (16)−0.0043 (15)0.0157 (14)0.0051 (14)
C160.0407 (15)0.0408 (15)0.0366 (15)0.0042 (12)0.0167 (13)0.0015 (12)
C170.0450 (17)0.064 (2)0.0450 (18)−0.0134 (15)0.0234 (15)−0.0101 (15)
C180.049 (2)0.104 (4)0.081 (3)−0.012 (2)0.040 (2)−0.025 (3)
C190.061 (2)0.068 (2)0.087 (3)−0.0139 (19)0.044 (2)−0.007 (2)
I1—C12.103 (3)C6—H6A0.9300
O1—C101.429 (4)C7—H7A0.9700
O1—H10.810 (19)C7—H7B0.9700
F1—C161.354 (3)C8—H8A0.9600
F2—C141.356 (4)C8—H8B0.9600
N1—C91.467 (4)C8—H8C0.9600
N1—C81.472 (4)C9—C101.560 (4)
N1—C71.480 (4)C9—H9A0.9700
N2—C191.335 (5)C9—H9B0.9700
N2—N41.360 (4)C10—C111.525 (4)
N2—C171.448 (4)C10—C171.534 (4)
N3—C191.320 (5)C11—C121.393 (4)
N3—C181.339 (6)C11—C161.394 (4)
N4—C181.319 (6)C12—C131.390 (5)
C1—C61.382 (5)C12—H12A0.9300
C1—C21.391 (5)C13—C141.358 (5)
C2—C31.390 (5)C13—H13A0.9300
C2—H2A0.9300C14—C151.375 (5)
C3—C41.383 (4)C15—C161.376 (4)
C3—H3A0.9300C15—H15A0.9300
C4—C51.385 (4)C17—H17A0.9700
C4—C71.510 (4)C17—H17B0.9700
C5—C61.380 (5)C18—H18A0.9300
C5—H5A0.9300C19—H19A0.9300
C10—O1—H196 (3)C10—C9—H9A109.4
C9—N1—C8112.2 (2)N1—C9—H9B109.4
C9—N1—C7111.3 (2)C10—C9—H9B109.4
C8—N1—C7108.3 (2)H9A—C9—H9B108.0
C19—N2—N4109.8 (3)O1—C10—C11110.0 (2)
C19—N2—C17129.5 (3)O1—C10—C17107.3 (3)
N4—N2—C17120.7 (3)C11—C10—C17107.1 (2)
C19—N3—C18102.5 (4)O1—C10—C9107.2 (2)
C18—N4—N2101.4 (3)C11—C10—C9113.4 (2)
C6—C1—C2120.0 (3)C17—C10—C9111.7 (3)
C6—C1—I1121.1 (2)C12—C11—C16115.1 (3)
C2—C1—I1118.9 (2)C12—C11—C10122.0 (3)
C3—C2—C1119.4 (3)C16—C11—C10122.9 (3)
C3—C2—H2A120.3C13—C12—C11122.2 (3)
C1—C2—H2A120.3C13—C12—H12A118.9
C4—C3—C2121.3 (3)C11—C12—H12A118.9
C4—C3—H3A119.3C14—C13—C12118.8 (3)
C2—C3—H3A119.3C14—C13—H13A120.6
C3—C4—C5117.9 (3)C12—C13—H13A120.6
C3—C4—C7120.9 (3)F2—C14—C13119.7 (3)
C5—C4—C7121.2 (3)F2—C14—C15117.6 (3)
C6—C5—C4122.0 (3)C13—C14—C15122.7 (3)
C6—C5—H5A119.0C14—C15—C16116.5 (3)
C4—C5—H5A119.0C14—C15—H15A121.7
C5—C6—C1119.3 (3)C16—C15—H15A121.7
C5—C6—H6A120.3F1—C16—C15116.8 (3)
C1—C6—H6A120.3F1—C16—C11118.5 (3)
N1—C7—C4113.2 (2)C15—C16—C11124.7 (3)
N1—C7—H7A108.9N2—C17—C10114.8 (3)
C4—C7—H7A108.9N2—C17—H17A108.6
N1—C7—H7B108.9C10—C17—H17A108.6
C4—C7—H7B108.9N2—C17—H17B108.6
H7A—C7—H7B107.8C10—C17—H17B108.6
N1—C8—H8A109.5H17A—C17—H17B107.5
N1—C8—H8B109.5N4—C18—N3116.0 (4)
H8A—C8—H8B109.5N4—C18—H18A122.0
N1—C8—H8C109.5N3—C18—H18A122.0
H8A—C8—H8C109.5N3—C19—N2110.3 (4)
H8B—C8—H8C109.5N3—C19—H19A124.9
N1—C9—C10111.1 (2)N2—C19—H19A124.9
N1—C9—H9A109.4
D—H···AD—HH···AD···AD—H···A
C9—H9B···N20.972.603.045 (4)108
C9—H9B···N40.972.423.191 (4)136
C12—H12A···O10.932.392.759 (4)103
C17—H17A···F10.972.433.061 (4)122
O1—H1···N10.81 (2)1.97 (3)2.651 (4)141 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9B⋯N20.972.603.045 (4)108
C9—H9B⋯N40.972.423.191 (4)136
C12—H12A⋯O10.932.392.759 (4)103
C17—H17A⋯F10.972.433.061 (4)122
O1—H1⋯N10.81 (2)1.97 (3)2.651 (4)141 (4)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Overview of medically important antifungal azole derivatives.

Authors:  R A Fromtling
Journal:  Clin Microbiol Rev       Date:  1988-04       Impact factor: 26.132

3.  An ultra-fast LC method for the determination of iodiconazole in microdialysis samples and its application in the calibration of laboratory-made linear probes.

Authors:  Ning Sun; Jun Wen; Guocai Lu; Zhanying Hong; Guorong Fan; Yutian Wu; Chunquan Sheng; Wannian Zhang
Journal:  J Pharm Biomed Anal       Date:  2009-07-22       Impact factor: 3.935

4.  An liquid chromatography-tandem mass spectrometry assay for determination of trace amount of new antifungal drug iodiconazole in human plasma.

Authors:  Shouhong Gao; Xia Tao; Lianna Sun; Chunquan Sheng; Wannian Zhang; Yunlei Yun; Jingxian Li; Haijun Miao; Wansheng Chen
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2008-12-24       Impact factor: 3.205

Review 5.  Antifungal pharmacotherapy for invasive mould infections.

Authors:  Jason C Gallagher; Elizabeth S Dodds Ashley; Richard H Drew; John R Perfect
Journal:  Expert Opin Pharmacother       Date:  2003-02       Impact factor: 3.889

  5 in total

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