| Literature DB >> 22904862 |
Hoong-Kun Fun, Tze Shyang Chia, Ahmed M Alafeefy, Hatem A Abdel-Aziz.
Abstract
In the title mol-ecular salt, C(16)H(13)N(2)OS(+)·HSO(4) (-), the thia-zolo[3,2-a]benzimidazolium ring system is roughly planar [maximum deviation = 0.046 (3) Å] and makes a dihedral angle of 58.22 (11)° with the benzene ring. The meth-oxy group is almost coplanar with its attached benzene ring [C(meth-yl)-O-C-C = -1.6 (5)°]. In the crystal, the cation is linked to the anion by a bifurcated N-H⋯(O,O) hydrogen bond, generating an R(1) (2)(4) ring motif. The ion pairs are then connected by a C-H⋯O hydrogen bond into inversion dimers and these dimers are further linked by O-H⋯O hydrogen bonds into an infinite tape along [100]. A π-π stacking inter-action [centroid-to-centroid distance = 3.5738 (18) Å] and a short inter-molecular contact [S⋯O = 2.830 (3) Å] are also observed.Entities:
Year: 2012 PMID: 22904862 PMCID: PMC3414329 DOI: 10.1107/S1600536812030541
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H13N2OS+·HSO4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4717 reflections |
| θ = 2.3–29.3° | |
| µ = 0.36 mm−1 | |
| β = 93.003 (4)° | Block, colourless |
| 0.31 × 0.15 × 0.12 mm | |
| Bruker APEX DUO CCD diffractometer | 3699 independent reflections |
| Radiation source: fine-focus sealed tube | 2904 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.5°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 12491 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3699 reflections | (Δ/σ)max = 0.001 |
| 231 parameters | Δρmax = 0.99 e Å−3 |
| 0 restraints | Δρmin = −0.68 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.21267 (17) | 0.46487 (4) | 0.42583 (4) | 0.0192 (2) | |
| S2 | 0.24639 (17) | 0.37855 (4) | 0.66173 (4) | 0.0214 (2) | |
| O1 | 0.7757 (6) | 0.47885 (11) | 0.06026 (13) | 0.0313 (6) | |
| O2 | 0.0440 (5) | 0.31645 (11) | 0.67548 (13) | 0.0281 (5) | |
| H1O2 | −0.1640 | 0.3283 | 0.6741 | 0.042* | |
| O3 | 0.5152 (6) | 0.34615 (13) | 0.63785 (13) | 0.0325 (6) | |
| O4 | 0.1087 (6) | 0.41582 (12) | 0.59898 (14) | 0.0315 (6) | |
| O5 | 0.2805 (7) | 0.41374 (13) | 0.73091 (15) | 0.0416 (7) | |
| N1 | 0.5806 (6) | 0.36239 (12) | 0.48611 (14) | 0.0176 (5) | |
| N2 | 0.5187 (5) | 0.37532 (11) | 0.36286 (13) | 0.0154 (5) | |
| C1 | 0.7199 (6) | 0.32219 (14) | 0.37436 (16) | 0.0162 (6) | |
| C2 | 0.8648 (7) | 0.28056 (14) | 0.32574 (16) | 0.0185 (6) | |
| H2A | 0.8406 | 0.2849 | 0.2737 | 0.022* | |
| C3 | 1.0472 (7) | 0.23229 (15) | 0.35886 (17) | 0.0217 (6) | |
| H3A | 1.1477 | 0.2035 | 0.3282 | 0.026* | |
| C4 | 1.0841 (7) | 0.22567 (15) | 0.43704 (17) | 0.0209 (6) | |
| H4A | 1.2093 | 0.1927 | 0.4569 | 0.025* | |
| C5 | 0.9397 (7) | 0.26676 (14) | 0.48591 (17) | 0.0195 (6) | |
| H5A | 0.9654 | 0.2624 | 0.5379 | 0.023* | |
| C6 | 0.7538 (6) | 0.31496 (14) | 0.45269 (16) | 0.0173 (6) | |
| C7 | 0.4426 (6) | 0.39749 (14) | 0.43096 (16) | 0.0168 (6) | |
| C8 | 0.2254 (7) | 0.46239 (14) | 0.32772 (16) | 0.0198 (6) | |
| H8A | 0.1249 | 0.4926 | 0.2961 | 0.024* | |
| C9 | 0.3934 (6) | 0.41295 (14) | 0.30187 (15) | 0.0167 (6) | |
| C10 | 0.4589 (6) | 0.39786 (14) | 0.22327 (16) | 0.0171 (6) | |
| C11 | 0.5788 (7) | 0.44837 (14) | 0.18026 (16) | 0.0186 (6) | |
| H11A | 0.6104 | 0.4906 | 0.2006 | 0.022* | |
| C12 | 0.6502 (7) | 0.43475 (15) | 0.10674 (16) | 0.0212 (6) | |
| C13 | 0.6007 (7) | 0.37120 (15) | 0.07654 (17) | 0.0226 (6) | |
| H13A | 0.6500 | 0.3621 | 0.0275 | 0.027* | |
| C14 | 0.4790 (7) | 0.32211 (15) | 0.11920 (17) | 0.0212 (6) | |
| H14A | 0.4460 | 0.2801 | 0.0986 | 0.025* | |
| C15 | 0.4049 (6) | 0.33474 (14) | 0.19277 (16) | 0.0188 (6) | |
| H15A | 0.3207 | 0.3016 | 0.2212 | 0.023* | |
| C16 | 0.8306 (10) | 0.54428 (17) | 0.0891 (2) | 0.0367 (9) | |
| H16A | 0.9177 | 0.5709 | 0.0513 | 0.055* | |
| H16B | 0.9628 | 0.5418 | 0.1329 | 0.055* | |
| H16C | 0.6481 | 0.5641 | 0.1023 | 0.055* | |
| H1N1 | 0.540 (8) | 0.3670 (18) | 0.537 (2) | 0.022 (9)* |
| S1 | 0.0257 (4) | 0.0124 (4) | 0.0195 (4) | 0.0041 (3) | 0.0020 (3) | −0.0003 (3) |
| S2 | 0.0273 (4) | 0.0140 (4) | 0.0233 (4) | 0.0020 (3) | 0.0053 (3) | −0.0002 (3) |
| O1 | 0.0577 (17) | 0.0144 (11) | 0.0228 (11) | −0.0097 (10) | 0.0120 (11) | 0.0003 (9) |
| O2 | 0.0312 (13) | 0.0176 (11) | 0.0352 (13) | −0.0015 (9) | −0.0016 (10) | 0.0050 (9) |
| O3 | 0.0345 (14) | 0.0369 (15) | 0.0262 (12) | 0.0089 (10) | 0.0037 (10) | 0.0035 (10) |
| O4 | 0.0381 (14) | 0.0203 (12) | 0.0365 (13) | 0.0082 (10) | 0.0046 (10) | 0.0096 (10) |
| O5 | 0.067 (2) | 0.0288 (14) | 0.0294 (13) | −0.0083 (12) | 0.0063 (12) | −0.0110 (11) |
| N1 | 0.0243 (13) | 0.0119 (12) | 0.0165 (12) | 0.0029 (9) | 0.0011 (9) | −0.0007 (9) |
| N2 | 0.0198 (12) | 0.0094 (11) | 0.0169 (11) | 0.0001 (8) | −0.0001 (9) | 0.0004 (9) |
| C1 | 0.0178 (14) | 0.0089 (13) | 0.0219 (14) | −0.0009 (10) | 0.0012 (10) | 0.0031 (10) |
| C2 | 0.0228 (15) | 0.0137 (14) | 0.0190 (13) | −0.0015 (11) | 0.0013 (11) | −0.0008 (11) |
| C3 | 0.0260 (16) | 0.0132 (14) | 0.0262 (15) | 0.0016 (11) | 0.0047 (12) | −0.0031 (12) |
| C4 | 0.0249 (16) | 0.0125 (14) | 0.0252 (15) | 0.0027 (11) | −0.0014 (11) | 0.0020 (11) |
| C5 | 0.0242 (16) | 0.0138 (14) | 0.0203 (14) | 0.0003 (11) | 0.0001 (11) | 0.0020 (11) |
| C6 | 0.0224 (15) | 0.0123 (13) | 0.0172 (13) | −0.0009 (10) | 0.0024 (10) | 0.0005 (11) |
| C7 | 0.0190 (14) | 0.0119 (13) | 0.0196 (14) | −0.0017 (10) | 0.0011 (10) | −0.0004 (10) |
| C8 | 0.0269 (16) | 0.0105 (14) | 0.0218 (14) | 0.0022 (11) | 0.0005 (11) | 0.0022 (11) |
| C9 | 0.0217 (15) | 0.0102 (13) | 0.0179 (14) | −0.0007 (10) | −0.0015 (10) | 0.0029 (10) |
| C10 | 0.0204 (15) | 0.0114 (13) | 0.0192 (13) | 0.0005 (10) | −0.0011 (10) | 0.0012 (11) |
| C11 | 0.0254 (16) | 0.0093 (13) | 0.0209 (14) | −0.0018 (10) | −0.0005 (11) | 0.0000 (11) |
| C12 | 0.0312 (17) | 0.0132 (14) | 0.0194 (14) | −0.0026 (11) | 0.0024 (11) | 0.0028 (11) |
| C13 | 0.0334 (18) | 0.0165 (15) | 0.0181 (14) | −0.0027 (12) | 0.0027 (12) | −0.0036 (11) |
| C14 | 0.0261 (16) | 0.0116 (14) | 0.0256 (15) | −0.0029 (11) | −0.0021 (12) | −0.0018 (11) |
| C15 | 0.0236 (15) | 0.0114 (13) | 0.0214 (14) | −0.0038 (10) | 0.0001 (11) | 0.0000 (11) |
| C16 | 0.066 (3) | 0.0121 (16) | 0.0334 (19) | −0.0074 (15) | 0.0170 (17) | 0.0012 (13) |
| S1—C7 | 1.710 (3) | C4—C5 | 1.388 (4) |
| S1—C8 | 1.750 (3) | C4—H4A | 0.9300 |
| S2—O5 | 1.421 (3) | C5—C6 | 1.396 (4) |
| S2—O4 | 1.458 (2) | C5—H5A | 0.9300 |
| S2—O3 | 1.466 (3) | C8—C9 | 1.348 (4) |
| S2—O2 | 1.577 (2) | C8—H8A | 0.9300 |
| O1—C12 | 1.358 (4) | C9—C10 | 1.476 (4) |
| O1—C16 | 1.428 (4) | C10—C15 | 1.396 (4) |
| O2—H1O2 | 0.9734 | C10—C11 | 1.399 (4) |
| N1—C7 | 1.337 (4) | C11—C12 | 1.391 (4) |
| N1—C6 | 1.389 (4) | C11—H11A | 0.9300 |
| N1—H1N1 | 0.93 (4) | C12—C13 | 1.399 (4) |
| N2—C7 | 1.353 (4) | C13—C14 | 1.378 (4) |
| N2—C1 | 1.413 (4) | C13—H13A | 0.9300 |
| N2—C9 | 1.417 (3) | C14—C15 | 1.392 (4) |
| C1—C2 | 1.393 (4) | C14—H14A | 0.9300 |
| C1—C6 | 1.401 (4) | C15—H15A | 0.9300 |
| C2—C3 | 1.387 (4) | C16—H16A | 0.9600 |
| C2—H2A | 0.9300 | C16—H16B | 0.9600 |
| C3—C4 | 1.398 (4) | C16—H16C | 0.9600 |
| C3—H3A | 0.9300 | ||
| C7—S1—C8 | 88.78 (14) | N1—C7—N2 | 110.6 (2) |
| O5—S2—O4 | 115.49 (16) | N1—C7—S1 | 135.9 (2) |
| O5—S2—O3 | 114.67 (17) | N2—C7—S1 | 113.4 (2) |
| O4—S2—O3 | 109.68 (14) | C9—C8—S1 | 114.2 (2) |
| O5—S2—O2 | 107.32 (15) | C9—C8—H8A | 122.9 |
| O4—S2—O2 | 107.17 (14) | S1—C8—H8A | 122.9 |
| O3—S2—O2 | 101.22 (15) | C8—C9—N2 | 110.1 (2) |
| C12—O1—C16 | 117.0 (2) | C8—C9—C10 | 128.3 (3) |
| S2—O2—H1O2 | 112.1 | N2—C9—C10 | 121.5 (2) |
| C7—N1—C6 | 107.6 (2) | C15—C10—C11 | 120.8 (3) |
| C7—N1—H1N1 | 123 (2) | C15—C10—C9 | 121.0 (3) |
| C6—N1—H1N1 | 129 (2) | C11—C10—C9 | 118.2 (3) |
| C7—N2—C1 | 108.2 (2) | C12—C11—C10 | 119.2 (3) |
| C7—N2—C9 | 113.5 (2) | C12—C11—H11A | 120.4 |
| C1—N2—C9 | 138.1 (2) | C10—C11—H11A | 120.4 |
| C2—C1—C6 | 121.6 (3) | O1—C12—C11 | 124.8 (3) |
| C2—C1—N2 | 133.4 (3) | O1—C12—C13 | 115.2 (3) |
| C6—C1—N2 | 105.0 (2) | C11—C12—C13 | 120.0 (3) |
| C3—C2—C1 | 116.6 (3) | C14—C13—C12 | 120.2 (3) |
| C3—C2—H2A | 121.7 | C14—C13—H13A | 119.9 |
| C1—C2—H2A | 121.7 | C12—C13—H13A | 119.9 |
| C2—C3—C4 | 121.8 (3) | C13—C14—C15 | 120.7 (3) |
| C2—C3—H3A | 119.1 | C13—C14—H14A | 119.6 |
| C4—C3—H3A | 119.1 | C15—C14—H14A | 119.6 |
| C5—C4—C3 | 122.0 (3) | C14—C15—C10 | 119.0 (3) |
| C5—C4—H4A | 119.0 | C14—C15—H15A | 120.5 |
| C3—C4—H4A | 119.0 | C10—C15—H15A | 120.5 |
| C4—C5—C6 | 116.3 (3) | O1—C16—H16A | 109.5 |
| C4—C5—H5A | 121.9 | O1—C16—H16B | 109.5 |
| C6—C5—H5A | 121.9 | H16A—C16—H16B | 109.5 |
| N1—C6—C5 | 129.7 (3) | O1—C16—H16C | 109.5 |
| N1—C6—C1 | 108.6 (2) | H16A—C16—H16C | 109.5 |
| C5—C6—C1 | 121.7 (3) | H16B—C16—H16C | 109.5 |
| C7—N2—C1—C2 | 178.7 (3) | C8—S1—C7—N2 | −0.4 (2) |
| C9—N2—C1—C2 | −6.0 (6) | C7—S1—C8—C9 | 0.3 (2) |
| C7—N2—C1—C6 | 0.2 (3) | S1—C8—C9—N2 | −0.1 (3) |
| C9—N2—C1—C6 | 175.4 (3) | S1—C8—C9—C10 | −178.0 (2) |
| C6—C1—C2—C3 | −0.8 (4) | C7—N2—C9—C8 | −0.2 (3) |
| N2—C1—C2—C3 | −179.2 (3) | C1—N2—C9—C8 | −175.2 (3) |
| C1—C2—C3—C4 | 0.0 (4) | C7—N2—C9—C10 | 177.9 (3) |
| C2—C3—C4—C5 | 0.3 (5) | C1—N2—C9—C10 | 2.8 (5) |
| C3—C4—C5—C6 | 0.3 (4) | C8—C9—C10—C15 | −125.6 (3) |
| C7—N1—C6—C5 | 179.7 (3) | N2—C9—C10—C15 | 56.7 (4) |
| C7—N1—C6—C1 | 0.4 (3) | C8—C9—C10—C11 | 54.9 (4) |
| C4—C5—C6—N1 | 179.6 (3) | N2—C9—C10—C11 | −122.8 (3) |
| C4—C5—C6—C1 | −1.2 (4) | C15—C10—C11—C12 | −1.3 (4) |
| C2—C1—C6—N1 | −179.1 (3) | C9—C10—C11—C12 | 178.2 (3) |
| N2—C1—C6—N1 | −0.4 (3) | C16—O1—C12—C11 | −1.6 (5) |
| C2—C1—C6—C5 | 1.5 (4) | C16—O1—C12—C13 | −179.9 (3) |
| N2—C1—C6—C5 | −179.8 (3) | C10—C11—C12—O1 | −177.9 (3) |
| C6—N1—C7—N2 | −0.3 (3) | C10—C11—C12—C13 | 0.3 (5) |
| C6—N1—C7—S1 | −176.2 (3) | O1—C12—C13—C14 | 178.9 (3) |
| C1—N2—C7—N1 | 0.0 (3) | C11—C12—C13—C14 | 0.5 (5) |
| C9—N2—C7—N1 | −176.5 (2) | C12—C13—C14—C15 | −0.3 (5) |
| C1—N2—C7—S1 | 176.94 (19) | C13—C14—C15—C10 | −0.8 (5) |
| C9—N2—C7—S1 | 0.4 (3) | C11—C10—C15—C14 | 1.6 (4) |
| C8—S1—C7—N1 | 175.4 (3) | C9—C10—C15—C14 | −177.9 (3) |
| H··· | ||||
| N1—H1 | 0.94 (4) | 1.85 (4) | 2.750 (3) | 160 (3) |
| N1—H1 | 0.94 (4) | 2.50 (4) | 3.199 (4) | 132 (3) |
| O2—H1 | 0.97 | 1.60 | 2.531 (4) | 158 |
| C11—H11 | 0.93 | 2.32 | 3.237 (4) | 170 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1N1⋯O3 | 0.94 (4) | 1.85 (4) | 2.750 (3) | 160 (3) |
| N1—H1N1⋯O4 | 0.94 (4) | 2.50 (4) | 3.199 (4) | 132 (3) |
| O2—H1O2⋯O3i | 0.97 | 1.60 | 2.531 (4) | 158 |
| C11—H11 | 0.93 | 2.32 | 3.237 (4) | 170 |
Symmetry codes: (i) ; (ii) .