Literature DB >> 22904862

3-(3-Meth-oxy-phen-yl)benzo[d]thia-zolo[3,2-a]imidazol-9-ium hydrogen sulfate.

Hoong-Kun Fun, Tze Shyang Chia, Ahmed M Alafeefy, Hatem A Abdel-Aziz.   

Abstract

In the title mol-ecular salt, C(16)H(13)N(2)OS(+)·HSO(4) (-), the thia-zolo[3,2-a]benzimidazolium ring system is roughly planar [maximum deviation = 0.046 (3) Å] and makes a dihedral angle of 58.22 (11)° with the benzene ring. The meth-oxy group is almost coplanar with its attached benzene ring [C(meth-yl)-O-C-C = -1.6 (5)°]. In the crystal, the cation is linked to the anion by a bifurcated N-H⋯(O,O) hydrogen bond, generating an R(1) (2)(4) ring motif. The ion pairs are then connected by a C-H⋯O hydrogen bond into inversion dimers and these dimers are further linked by O-H⋯O hydrogen bonds into an infinite tape along [100]. A π-π stacking inter-action [centroid-to-centroid distance = 3.5738 (18) Å] and a short inter-molecular contact [S⋯O = 2.830 (3) Å] are also observed.

Entities:  

Year:  2012        PMID: 22904862      PMCID: PMC3414329          DOI: 10.1107/S1600536812030541

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of thia­zolo[3,2-a]benzimidazoles, see: Chimirri et al. (1988 ▶); Al-Rashood & Abdel-Aziz (2010 ▶); Hamdy et al. (2007 ▶); Abdel-Aziz et al. (2007 ▶, 2008 ▶); Farag et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H13N2OS+·HSO4 M = 378.41 Monoclinic, a = 4.5428 (8) Å b = 20.096 (4) Å c = 17.788 (3) Å β = 93.003 (4)° V = 1621.6 (5) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 100 K 0.31 × 0.15 × 0.12 mm

Data collection

Bruker APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.898, T max = 0.959 12491 measured reflections 3699 independent reflections 2904 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.170 S = 1.04 3699 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.99 e Å−3 Δρmin = −0.68 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812030541/hb6885sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030541/hb6885Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812030541/hb6885Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13N2OS+·HSO4F(000) = 784
Mr = 378.41Dx = 1.550 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4717 reflections
a = 4.5428 (8) Åθ = 2.3–29.3°
b = 20.096 (4) ŵ = 0.36 mm1
c = 17.788 (3) ÅT = 100 K
β = 93.003 (4)°Block, colourless
V = 1621.6 (5) Å30.31 × 0.15 × 0.12 mm
Z = 4
Bruker APEX DUO CCD diffractometer3699 independent reflections
Radiation source: fine-focus sealed tube2904 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.050
φ and ω scansθmax = 27.5°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −5→5
Tmin = 0.898, Tmax = 0.959k = −26→24
12491 measured reflectionsl = −19→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.170H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0882P)2 + 3.0462P] where P = (Fo2 + 2Fc2)/3
3699 reflections(Δ/σ)max = 0.001
231 parametersΔρmax = 0.99 e Å3
0 restraintsΔρmin = −0.68 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.21267 (17)0.46487 (4)0.42583 (4)0.0192 (2)
S20.24639 (17)0.37855 (4)0.66173 (4)0.0214 (2)
O10.7757 (6)0.47885 (11)0.06026 (13)0.0313 (6)
O20.0440 (5)0.31645 (11)0.67548 (13)0.0281 (5)
H1O2−0.16400.32830.67410.042*
O30.5152 (6)0.34615 (13)0.63785 (13)0.0325 (6)
O40.1087 (6)0.41582 (12)0.59898 (14)0.0315 (6)
O50.2805 (7)0.41374 (13)0.73091 (15)0.0416 (7)
N10.5806 (6)0.36239 (12)0.48611 (14)0.0176 (5)
N20.5187 (5)0.37532 (11)0.36286 (13)0.0154 (5)
C10.7199 (6)0.32219 (14)0.37436 (16)0.0162 (6)
C20.8648 (7)0.28056 (14)0.32574 (16)0.0185 (6)
H2A0.84060.28490.27370.022*
C31.0472 (7)0.23229 (15)0.35886 (17)0.0217 (6)
H3A1.14770.20350.32820.026*
C41.0841 (7)0.22567 (15)0.43704 (17)0.0209 (6)
H4A1.20930.19270.45690.025*
C50.9397 (7)0.26676 (14)0.48591 (17)0.0195 (6)
H5A0.96540.26240.53790.023*
C60.7538 (6)0.31496 (14)0.45269 (16)0.0173 (6)
C70.4426 (6)0.39749 (14)0.43096 (16)0.0168 (6)
C80.2254 (7)0.46239 (14)0.32772 (16)0.0198 (6)
H8A0.12490.49260.29610.024*
C90.3934 (6)0.41295 (14)0.30187 (15)0.0167 (6)
C100.4589 (6)0.39786 (14)0.22327 (16)0.0171 (6)
C110.5788 (7)0.44837 (14)0.18026 (16)0.0186 (6)
H11A0.61040.49060.20060.022*
C120.6502 (7)0.43475 (15)0.10674 (16)0.0212 (6)
C130.6007 (7)0.37120 (15)0.07654 (17)0.0226 (6)
H13A0.65000.36210.02750.027*
C140.4790 (7)0.32211 (15)0.11920 (17)0.0212 (6)
H14A0.44600.28010.09860.025*
C150.4049 (6)0.33474 (14)0.19277 (16)0.0188 (6)
H15A0.32070.30160.22120.023*
C160.8306 (10)0.54428 (17)0.0891 (2)0.0367 (9)
H16A0.91770.57090.05130.055*
H16B0.96280.54180.13290.055*
H16C0.64810.56410.10230.055*
H1N10.540 (8)0.3670 (18)0.537 (2)0.022 (9)*
U11U22U33U12U13U23
S10.0257 (4)0.0124 (4)0.0195 (4)0.0041 (3)0.0020 (3)−0.0003 (3)
S20.0273 (4)0.0140 (4)0.0233 (4)0.0020 (3)0.0053 (3)−0.0002 (3)
O10.0577 (17)0.0144 (11)0.0228 (11)−0.0097 (10)0.0120 (11)0.0003 (9)
O20.0312 (13)0.0176 (11)0.0352 (13)−0.0015 (9)−0.0016 (10)0.0050 (9)
O30.0345 (14)0.0369 (15)0.0262 (12)0.0089 (10)0.0037 (10)0.0035 (10)
O40.0381 (14)0.0203 (12)0.0365 (13)0.0082 (10)0.0046 (10)0.0096 (10)
O50.067 (2)0.0288 (14)0.0294 (13)−0.0083 (12)0.0063 (12)−0.0110 (11)
N10.0243 (13)0.0119 (12)0.0165 (12)0.0029 (9)0.0011 (9)−0.0007 (9)
N20.0198 (12)0.0094 (11)0.0169 (11)0.0001 (8)−0.0001 (9)0.0004 (9)
C10.0178 (14)0.0089 (13)0.0219 (14)−0.0009 (10)0.0012 (10)0.0031 (10)
C20.0228 (15)0.0137 (14)0.0190 (13)−0.0015 (11)0.0013 (11)−0.0008 (11)
C30.0260 (16)0.0132 (14)0.0262 (15)0.0016 (11)0.0047 (12)−0.0031 (12)
C40.0249 (16)0.0125 (14)0.0252 (15)0.0027 (11)−0.0014 (11)0.0020 (11)
C50.0242 (16)0.0138 (14)0.0203 (14)0.0003 (11)0.0001 (11)0.0020 (11)
C60.0224 (15)0.0123 (13)0.0172 (13)−0.0009 (10)0.0024 (10)0.0005 (11)
C70.0190 (14)0.0119 (13)0.0196 (14)−0.0017 (10)0.0011 (10)−0.0004 (10)
C80.0269 (16)0.0105 (14)0.0218 (14)0.0022 (11)0.0005 (11)0.0022 (11)
C90.0217 (15)0.0102 (13)0.0179 (14)−0.0007 (10)−0.0015 (10)0.0029 (10)
C100.0204 (15)0.0114 (13)0.0192 (13)0.0005 (10)−0.0011 (10)0.0012 (11)
C110.0254 (16)0.0093 (13)0.0209 (14)−0.0018 (10)−0.0005 (11)0.0000 (11)
C120.0312 (17)0.0132 (14)0.0194 (14)−0.0026 (11)0.0024 (11)0.0028 (11)
C130.0334 (18)0.0165 (15)0.0181 (14)−0.0027 (12)0.0027 (12)−0.0036 (11)
C140.0261 (16)0.0116 (14)0.0256 (15)−0.0029 (11)−0.0021 (12)−0.0018 (11)
C150.0236 (15)0.0114 (13)0.0214 (14)−0.0038 (10)0.0001 (11)0.0000 (11)
C160.066 (3)0.0121 (16)0.0334 (19)−0.0074 (15)0.0170 (17)0.0012 (13)
S1—C71.710 (3)C4—C51.388 (4)
S1—C81.750 (3)C4—H4A0.9300
S2—O51.421 (3)C5—C61.396 (4)
S2—O41.458 (2)C5—H5A0.9300
S2—O31.466 (3)C8—C91.348 (4)
S2—O21.577 (2)C8—H8A0.9300
O1—C121.358 (4)C9—C101.476 (4)
O1—C161.428 (4)C10—C151.396 (4)
O2—H1O20.9734C10—C111.399 (4)
N1—C71.337 (4)C11—C121.391 (4)
N1—C61.389 (4)C11—H11A0.9300
N1—H1N10.93 (4)C12—C131.399 (4)
N2—C71.353 (4)C13—C141.378 (4)
N2—C11.413 (4)C13—H13A0.9300
N2—C91.417 (3)C14—C151.392 (4)
C1—C21.393 (4)C14—H14A0.9300
C1—C61.401 (4)C15—H15A0.9300
C2—C31.387 (4)C16—H16A0.9600
C2—H2A0.9300C16—H16B0.9600
C3—C41.398 (4)C16—H16C0.9600
C3—H3A0.9300
C7—S1—C888.78 (14)N1—C7—N2110.6 (2)
O5—S2—O4115.49 (16)N1—C7—S1135.9 (2)
O5—S2—O3114.67 (17)N2—C7—S1113.4 (2)
O4—S2—O3109.68 (14)C9—C8—S1114.2 (2)
O5—S2—O2107.32 (15)C9—C8—H8A122.9
O4—S2—O2107.17 (14)S1—C8—H8A122.9
O3—S2—O2101.22 (15)C8—C9—N2110.1 (2)
C12—O1—C16117.0 (2)C8—C9—C10128.3 (3)
S2—O2—H1O2112.1N2—C9—C10121.5 (2)
C7—N1—C6107.6 (2)C15—C10—C11120.8 (3)
C7—N1—H1N1123 (2)C15—C10—C9121.0 (3)
C6—N1—H1N1129 (2)C11—C10—C9118.2 (3)
C7—N2—C1108.2 (2)C12—C11—C10119.2 (3)
C7—N2—C9113.5 (2)C12—C11—H11A120.4
C1—N2—C9138.1 (2)C10—C11—H11A120.4
C2—C1—C6121.6 (3)O1—C12—C11124.8 (3)
C2—C1—N2133.4 (3)O1—C12—C13115.2 (3)
C6—C1—N2105.0 (2)C11—C12—C13120.0 (3)
C3—C2—C1116.6 (3)C14—C13—C12120.2 (3)
C3—C2—H2A121.7C14—C13—H13A119.9
C1—C2—H2A121.7C12—C13—H13A119.9
C2—C3—C4121.8 (3)C13—C14—C15120.7 (3)
C2—C3—H3A119.1C13—C14—H14A119.6
C4—C3—H3A119.1C15—C14—H14A119.6
C5—C4—C3122.0 (3)C14—C15—C10119.0 (3)
C5—C4—H4A119.0C14—C15—H15A120.5
C3—C4—H4A119.0C10—C15—H15A120.5
C4—C5—C6116.3 (3)O1—C16—H16A109.5
C4—C5—H5A121.9O1—C16—H16B109.5
C6—C5—H5A121.9H16A—C16—H16B109.5
N1—C6—C5129.7 (3)O1—C16—H16C109.5
N1—C6—C1108.6 (2)H16A—C16—H16C109.5
C5—C6—C1121.7 (3)H16B—C16—H16C109.5
C7—N2—C1—C2178.7 (3)C8—S1—C7—N2−0.4 (2)
C9—N2—C1—C2−6.0 (6)C7—S1—C8—C90.3 (2)
C7—N2—C1—C60.2 (3)S1—C8—C9—N2−0.1 (3)
C9—N2—C1—C6175.4 (3)S1—C8—C9—C10−178.0 (2)
C6—C1—C2—C3−0.8 (4)C7—N2—C9—C8−0.2 (3)
N2—C1—C2—C3−179.2 (3)C1—N2—C9—C8−175.2 (3)
C1—C2—C3—C40.0 (4)C7—N2—C9—C10177.9 (3)
C2—C3—C4—C50.3 (5)C1—N2—C9—C102.8 (5)
C3—C4—C5—C60.3 (4)C8—C9—C10—C15−125.6 (3)
C7—N1—C6—C5179.7 (3)N2—C9—C10—C1556.7 (4)
C7—N1—C6—C10.4 (3)C8—C9—C10—C1154.9 (4)
C4—C5—C6—N1179.6 (3)N2—C9—C10—C11−122.8 (3)
C4—C5—C6—C1−1.2 (4)C15—C10—C11—C12−1.3 (4)
C2—C1—C6—N1−179.1 (3)C9—C10—C11—C12178.2 (3)
N2—C1—C6—N1−0.4 (3)C16—O1—C12—C11−1.6 (5)
C2—C1—C6—C51.5 (4)C16—O1—C12—C13−179.9 (3)
N2—C1—C6—C5−179.8 (3)C10—C11—C12—O1−177.9 (3)
C6—N1—C7—N2−0.3 (3)C10—C11—C12—C130.3 (5)
C6—N1—C7—S1−176.2 (3)O1—C12—C13—C14178.9 (3)
C1—N2—C7—N10.0 (3)C11—C12—C13—C140.5 (5)
C9—N2—C7—N1−176.5 (2)C12—C13—C14—C15−0.3 (5)
C1—N2—C7—S1176.94 (19)C13—C14—C15—C10−0.8 (5)
C9—N2—C7—S10.4 (3)C11—C10—C15—C141.6 (4)
C8—S1—C7—N1175.4 (3)C9—C10—C15—C14−177.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O30.94 (4)1.85 (4)2.750 (3)160 (3)
N1—H1N1···O40.94 (4)2.50 (4)3.199 (4)132 (3)
O2—H1O2···O3i0.971.602.531 (4)158
C11—H11A···O5ii0.932.323.237 (4)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O30.94 (4)1.85 (4)2.750 (3)160 (3)
N1—H1N1⋯O40.94 (4)2.50 (4)3.199 (4)132 (3)
O2—H1O2⋯O3i 0.971.602.531 (4)158
C11—H11A⋯O5ii 0.932.323.237 (4)170

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Thiazolo[3,2-a]benzimidazoles: synthetic strategies, chemical transformations and biological activities.

Authors:  Khalid A Al-Rashood; Hatem A Abdel-Aziz
Journal:  Molecules       Date:  2010-05-26       Impact factor: 4.411

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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