Literature DB >> 22904859

4-(Diphenyl-amino)-benzaldehyde 4-phenyl-thio-semicarbazone.

Rafael Mendoza-Meroño1, Laura Menéndez-Taboada, Santiago García-Granda.   

Abstract

The title mol-ecule, C(26)H(22)N(4)S, is composed of three main parts, viz. a triphenyl-amine group is connected to a phenyl ring by a thio-semicarbazone moiety. The C= N double bond has an E conformation. The crystal packing is dominated by strong hydrogen bonds through the thio-semicarbazone moiety, with pairs of N-H⋯S hydrogen bonds linking the mol-ecules to form inversion dimers with an R(2) (2)(8) ring motif. An intra-molecular N-H⋯N hydrogen bond is also present, generating an S(5) ring motif. Although the structure contains four phenyl rings, π-π stacking inter-actions are not formed between them, probably due to the conformation adopted by the triphenyl-amine group. However, a weak π-π stacking inter-action is observed between the phenyl ring and the delocalized thio-semicarbazone moiety.

Entities:  

Year:  2012        PMID: 22904859      PMCID: PMC3414326          DOI: 10.1107/S160053681203053X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds and their biological activity, see: Gupta et al. (2007 ▶); Lee et al. (2010 ▶); Odenike et al. (2008 ▶). For hydrogen-bond motifs, see Bernstein et al. (1995 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C26H22N4S M = 422.55 Monoclinic, a = 13.6069 (3) Å b = 15.2763 (3) Å c = 11.2778 (2) Å β = 104.094 (2)° V = 2273.67 (8) Å3 Z = 4 Cu Kα radiation μ = 1.41 mm−1 T = 285 K 0.17 × 0.09 × 0.05 mm

Data collection

Oxford Xcalibur diffractometer with Onyx Nova detector Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.726, T max = 1.000 26370 measured reflections 4623 independent reflections 3535 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.149 S = 1.07 4623 reflections 369 parameters All H-atom parameters refined Δρmax = 0.20 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2010 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR08 (Burla et al., 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PLATON (Spek, 2009 ▶), PARST95 (Nardelli, 1995 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681203053X/lr2069sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203053X/lr2069Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203053X/lr2069Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H22N4SF(000) = 888
Mr = 422.55Dx = 1.234 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ybcCell parameters from 8693 reflections
a = 13.6069 (3) Åθ = 2.9–75.3°
b = 15.2763 (3) ŵ = 1.41 mm1
c = 11.2778 (2) ÅT = 285 K
β = 104.094 (2)°Plate, dark yellow
V = 2273.67 (8) Å30.17 × 0.09 × 0.05 mm
Z = 4
Oxford Xcalibur diffractometer with Onyx Nova detector4623 independent reflections
Radiation source: Nova (Cu) X-ray Source3535 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.067
Detector resolution: 8.2640 pixels mm-1θmax = 75.5°, θmin = 3.4°
ω scansh = −16→16
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −17→18
Tmin = 0.726, Tmax = 1.000l = −11→14
26370 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049All H-atom parameters refined
wR(F2) = 0.149w = 1/[σ2(Fo2) + (0.0766P)2 + 0.2813P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
4623 reflectionsΔρmax = 0.20 e Å3
369 parametersΔρmin = −0.29 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0012 (3)
Experimental. Absorption correction: CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.36 (release 02-08-2010 CrysAlis171 .NET) (compiled Aug 2 2010,13:00:58) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.94600 (4)0.03619 (4)0.15627 (5)0.0689 (2)
N21.16947 (11)0.16240 (10)0.07520 (14)0.0504 (4)
N31.08689 (11)0.10941 (11)0.06823 (15)0.0522 (4)
N41.08031 (14)0.15773 (11)0.25732 (15)0.0591 (4)
N11.56053 (12)0.35772 (12)−0.02307 (15)0.0597 (4)
C81.21068 (14)0.15830 (13)−0.01584 (17)0.0520 (4)
C141.33120 (14)0.27924 (13)0.06329 (17)0.0527 (4)
C91.29891 (13)0.21151 (12)−0.01924 (16)0.0490 (4)
C71.04293 (14)0.10515 (12)0.16271 (16)0.0510 (4)
C121.47208 (13)0.30889 (12)−0.02447 (17)0.0508 (4)
C131.41611 (15)0.32736 (13)0.06068 (18)0.0534 (4)
C151.58656 (15)0.38294 (13)−0.13237 (19)0.0554 (5)
C111.43998 (16)0.24198 (14)−0.10803 (19)0.0611 (5)
C101.35392 (16)0.19418 (14)−0.10567 (18)0.0585 (5)
C61.04960 (16)0.15504 (13)0.37043 (18)0.0573 (5)
C211.62500 (14)0.38028 (13)0.09250 (18)0.0559 (5)
C201.68751 (18)0.39145 (16)−0.1348 (3)0.0717 (6)
C50.97506 (19)0.20986 (19)0.3890 (2)0.0749 (6)
C161.5132 (2)0.40044 (16)−0.2379 (2)0.0706 (6)
C221.66006 (18)0.46481 (15)0.1163 (2)0.0680 (6)
C30.9924 (3)0.1471 (2)0.5872 (3)0.0880 (8)
C11.0965 (2)0.09751 (18)0.4592 (2)0.0832 (7)
C191.7123 (3)0.4176 (2)−0.2411 (4)0.0966 (10)
C231.7227 (2)0.4862 (2)0.2285 (3)0.0841 (7)
C171.5399 (3)0.4254 (2)−0.3436 (3)0.0895 (8)
C181.6401 (3)0.4340 (2)−0.3447 (4)0.1005 (10)
C261.6521 (2)0.31817 (18)0.1832 (2)0.0818 (7)
C21.0684 (3)0.0947 (2)0.5689 (3)0.1006 (10)
C40.9469 (2)0.2052 (2)0.5001 (3)0.0877 (8)
C241.7493 (2)0.4241 (2)0.3180 (3)0.0984 (9)
C251.7131 (3)0.3415 (2)0.2959 (3)0.1070 (11)
H81.1832 (15)0.1157 (13)−0.0856 (18)0.052 (5)*
H131.4370 (18)0.3751 (16)0.116 (2)0.069 (6)*
H101.3326 (17)0.1481 (15)−0.163 (2)0.064 (6)*
H271.0675 (17)0.0693 (16)−0.001 (2)0.069 (6)*
H141.2919 (17)0.2952 (15)0.123 (2)0.067 (6)*
H281.131 (2)0.1912 (18)0.249 (2)0.076 (7)*
H111.4793 (19)0.2228 (16)−0.164 (2)0.076 (7)*
H221.639 (2)0.509 (2)0.055 (3)0.088 (8)*
H50.945 (2)0.249 (2)0.327 (3)0.094 (9)*
H201.737 (2)0.3775 (17)−0.064 (2)0.076 (7)*
H161.446 (2)0.3934 (18)−0.237 (2)0.085 (8)*
H11.157 (3)0.057 (2)0.454 (3)0.116 (10)*
H261.631 (2)0.259 (2)0.162 (3)0.099 (9)*
H231.743 (2)0.545 (2)0.249 (3)0.100 (9)*
H40.893 (3)0.242 (3)0.507 (3)0.127 (12)*
H30.970 (3)0.139 (2)0.657 (3)0.110 (10)*
H171.486 (2)0.4377 (19)−0.416 (3)0.095 (9)*
H251.729 (2)0.295 (2)0.356 (3)0.114 (10)*
H181.650 (3)0.453 (2)−0.425 (3)0.123 (11)*
H241.793 (3)0.435 (2)0.402 (3)0.117 (10)*
H21.094 (3)0.047 (3)0.627 (4)0.156 (15)*
H191.776 (3)0.418 (2)−0.242 (3)0.115 (11)*
U11U22U33U12U13U23
S10.0620 (3)0.0902 (4)0.0645 (3)−0.0305 (3)0.0346 (3)−0.0166 (2)
N20.0435 (8)0.0544 (9)0.0571 (9)−0.0051 (6)0.0197 (7)0.0061 (6)
N30.0470 (8)0.0611 (9)0.0538 (9)−0.0103 (6)0.0227 (7)0.0001 (7)
N40.0621 (10)0.0633 (10)0.0595 (10)−0.0172 (8)0.0291 (8)−0.0071 (7)
N10.0513 (9)0.0729 (11)0.0580 (10)−0.0204 (7)0.0194 (7)0.0007 (7)
C80.0469 (10)0.0628 (11)0.0496 (10)−0.0083 (8)0.0181 (8)0.0027 (8)
C140.0495 (10)0.0655 (11)0.0478 (10)−0.0069 (8)0.0208 (8)−0.0009 (8)
C90.0435 (9)0.0603 (10)0.0457 (9)−0.0073 (7)0.0158 (7)0.0046 (7)
C70.0456 (10)0.0591 (11)0.0518 (10)−0.0002 (7)0.0187 (8)0.0028 (7)
C120.0446 (9)0.0591 (10)0.0511 (10)−0.0118 (7)0.0164 (8)0.0016 (7)
C130.0527 (11)0.0601 (11)0.0504 (10)−0.0097 (8)0.0180 (8)−0.0041 (8)
C150.0517 (10)0.0556 (10)0.0659 (12)−0.0092 (8)0.0274 (9)0.0009 (8)
C110.0612 (12)0.0715 (13)0.0593 (12)−0.0200 (9)0.0315 (10)−0.0112 (9)
C100.0605 (12)0.0674 (12)0.0533 (11)−0.0206 (9)0.0244 (9)−0.0099 (9)
C60.0601 (11)0.0618 (11)0.0555 (11)−0.0156 (8)0.0248 (9)−0.0101 (8)
C210.0446 (10)0.0610 (11)0.0626 (11)−0.0097 (8)0.0141 (8)0.0007 (8)
C200.0556 (13)0.0799 (15)0.0902 (17)−0.0125 (10)0.0380 (13)−0.0069 (12)
C50.0682 (14)0.0901 (17)0.0703 (15)0.0024 (12)0.0241 (12)−0.0077 (12)
C160.0648 (14)0.0816 (15)0.0711 (14)−0.0047 (11)0.0274 (11)0.0119 (11)
C220.0681 (14)0.0619 (13)0.0732 (14)−0.0122 (10)0.0160 (11)−0.0012 (10)
C30.109 (2)0.100 (2)0.0674 (16)−0.0263 (16)0.0463 (16)−0.0164 (14)
C10.109 (2)0.0796 (16)0.0722 (15)0.0111 (14)0.0446 (14)0.0038 (11)
C190.088 (2)0.100 (2)0.125 (3)−0.0330 (16)0.071 (2)−0.0205 (18)
C230.0795 (17)0.0834 (18)0.0887 (18)−0.0274 (13)0.0189 (13)−0.0199 (14)
C170.111 (2)0.0909 (19)0.0725 (17)−0.0087 (15)0.0344 (16)0.0171 (13)
C180.133 (3)0.097 (2)0.094 (2)−0.0332 (18)0.070 (2)0.0010 (16)
C260.0736 (15)0.0710 (15)0.0876 (17)−0.0168 (12)−0.0056 (12)0.0146 (12)
C20.144 (3)0.097 (2)0.0718 (17)0.0073 (19)0.0487 (18)0.0130 (14)
C40.0747 (17)0.111 (2)0.0872 (19)−0.0094 (15)0.0392 (15)−0.0299 (16)
C240.0808 (18)0.124 (3)0.0789 (18)−0.0342 (17)−0.0022 (14)−0.0033 (16)
C250.097 (2)0.111 (2)0.091 (2)−0.0268 (17)−0.0221 (16)0.0267 (17)
S1—C71.6757 (19)C21—C261.378 (3)
N2—C81.286 (2)C21—C221.380 (3)
N2—N31.372 (2)C20—C191.380 (4)
N3—C71.345 (2)C20—H200.94 (3)
N3—N21.372 (2)C5—C41.399 (4)
N3—H270.98 (2)C5—H50.94 (3)
N4—C71.333 (2)C16—C171.382 (3)
N4—C61.436 (2)C16—H160.92 (3)
N4—H280.88 (3)C22—C231.381 (4)
N1—C121.413 (2)C22—H220.96 (3)
N1—C151.416 (2)C3—C41.357 (5)
N1—C211.425 (3)C3—C21.362 (5)
C8—N21.286 (2)C3—H30.92 (4)
C8—C91.458 (2)C1—C21.381 (4)
C8—H81.02 (2)C1—H11.04 (4)
C14—C131.376 (3)C19—C181.354 (5)
C14—C91.390 (3)C19—H190.87 (4)
C14—H140.98 (2)C23—C241.368 (4)
C9—C101.391 (3)C23—H230.95 (3)
C12—C111.387 (3)C17—C181.373 (5)
C12—C131.392 (3)C17—H170.98 (3)
C13—H130.96 (2)C18—H180.99 (4)
C15—C161.381 (3)C26—C251.385 (4)
C15—C201.387 (3)C26—H260.97 (3)
C11—C101.386 (3)C2—H20.99 (5)
C11—H110.97 (3)C4—H40.94 (4)
C10—H100.95 (2)C24—C251.356 (5)
C6—C11.368 (4)C24—H241.01 (3)
C6—C51.370 (3)C25—H250.97 (4)
C8—N2—N3115.86 (16)C19—C20—H20121.7 (17)
C7—N3—N2119.97 (16)C15—C20—H20118.5 (17)
C7—N3—H27121.1 (14)C6—C5—C4118.7 (3)
N2—N3—H27118.4 (14)C6—C5—H5118.7 (18)
C7—N4—C6123.82 (16)C4—C5—H5122.6 (18)
C7—N4—H28114.7 (17)C15—C16—C17120.7 (3)
C6—N4—H28121.1 (17)C15—C16—H16118.7 (17)
C12—N1—C15121.79 (16)C17—C16—H16120.6 (17)
C12—N1—C21118.09 (15)C21—C22—C23120.4 (2)
C15—N1—C21120.11 (15)C21—C22—H22118.8 (17)
N2—C8—C9121.06 (17)C23—C22—H22120.8 (17)
N2—C8—H8119.9 (11)C4—C3—C2120.3 (3)
C9—C8—H8119.0 (11)C4—C3—H3121 (2)
C13—C14—C9120.91 (18)C2—C3—H3118 (2)
C13—C14—H14118.7 (13)C6—C1—C2119.6 (3)
C9—C14—H14120.3 (13)C6—C1—H1125.0 (19)
C14—C9—C10118.33 (16)C2—C1—H1115.3 (19)
C14—C9—C8121.71 (17)C18—C19—C20121.6 (3)
C10—C9—C8119.95 (17)C18—C19—H19120 (2)
N4—C7—N3116.64 (16)C20—C19—H19118 (2)
N4—C7—S1123.79 (14)C24—C23—C22120.4 (3)
N3—C7—S1119.57 (14)C24—C23—H23118.0 (18)
C11—C12—C13118.91 (16)C22—C23—H23121.4 (18)
C11—C12—N1121.55 (17)C18—C17—C16120.3 (3)
C13—C12—N1119.53 (17)C18—C17—H17121.6 (18)
C14—C13—C12120.66 (18)C16—C17—H17118.1 (18)
C14—C13—H13120.6 (14)C19—C18—C17119.2 (3)
C12—C13—H13118.7 (14)C19—C18—H18128 (2)
C16—C15—C20118.5 (2)C17—C18—H18113 (2)
C16—C15—N1121.41 (18)C21—C26—C25119.8 (3)
C20—C15—N1120.1 (2)C21—C26—H26117.1 (18)
C10—C11—C12120.20 (19)C25—C26—H26122.9 (18)
C10—C11—H11117.2 (14)C3—C2—C1120.2 (3)
C12—C11—H11122.3 (14)C3—C2—H2120 (3)
C11—C10—C9120.97 (18)C1—C2—H2119 (3)
C11—C10—H10119.6 (14)C3—C4—C5120.4 (3)
C9—C10—H10119.4 (14)C3—C4—H4124 (2)
C1—C6—C5120.8 (2)C5—C4—H4116 (2)
C1—C6—N4118.9 (2)C25—C24—C23119.4 (3)
C5—C6—N4120.3 (2)C25—C24—H24116 (2)
C26—C21—C22118.8 (2)C23—C24—H24125 (2)
C26—C21—N1120.42 (19)C24—C25—C26121.2 (3)
C22—C21—N1120.73 (19)C24—C25—H25123 (2)
C19—C20—C15119.8 (3)C26—C25—H25116 (2)
C8—N2—N3—C7175.71 (17)C7—N4—C6—C185.9 (3)
N3—N2—C8—C9179.95 (16)C7—N4—C6—C5−94.6 (3)
C13—C14—C9—C10−0.8 (3)C12—N1—C21—C2646.8 (3)
C13—C14—C9—C8178.35 (18)C15—N1—C21—C26−132.2 (2)
N2—C8—C9—C14−11.5 (3)C12—N1—C21—C22−132.1 (2)
N2—C8—C9—C14−11.5 (3)C15—N1—C21—C2248.9 (3)
N2—C8—C9—C10167.58 (19)C16—C15—C20—C190.5 (4)
N2—C8—C9—C10167.58 (19)N1—C15—C20—C19−178.8 (2)
C6—N4—C7—N3−173.22 (18)C1—C6—C5—C4−0.7 (4)
C6—N4—C7—S17.0 (3)N4—C6—C5—C4179.8 (2)
N2—N3—C7—N43.5 (3)C20—C15—C16—C170.3 (4)
N2—N3—C7—N43.5 (3)N1—C15—C16—C17179.7 (2)
N2—N3—C7—S1−176.74 (13)C26—C21—C22—C231.1 (4)
N2—N3—C7—S1−176.74 (13)N1—C21—C22—C23−179.9 (2)
C15—N1—C12—C1139.0 (3)C5—C6—C1—C2−0.1 (4)
C21—N1—C12—C11−139.9 (2)N4—C6—C1—C2179.4 (3)
C15—N1—C12—C13−141.7 (2)C15—C20—C19—C18−1.1 (4)
C21—N1—C12—C1339.3 (3)C21—C22—C23—C24−1.0 (4)
C9—C14—C13—C12−0.4 (3)C15—C16—C17—C18−0.7 (4)
C11—C12—C13—C141.0 (3)C20—C19—C18—C170.8 (5)
N1—C12—C13—C14−178.29 (18)C16—C17—C18—C190.1 (5)
C12—N1—C15—C1631.7 (3)C22—C21—C26—C250.3 (4)
C21—N1—C15—C16−149.4 (2)N1—C21—C26—C25−178.6 (3)
C12—N1—C15—C20−149.0 (2)C4—C3—C2—C1−3.0 (5)
C21—N1—C15—C2030.0 (3)C6—C1—C2—C31.9 (5)
C13—C12—C11—C10−0.4 (3)C2—C3—C4—C52.2 (5)
N1—C12—C11—C10178.82 (19)C6—C5—C4—C3−0.3 (4)
C12—C11—C10—C9−0.7 (3)C22—C23—C24—C25−0.5 (5)
C14—C9—C10—C111.3 (3)C23—C24—C25—C262.0 (6)
C8—C9—C10—C11−177.8 (2)C21—C26—C25—C24−2.0 (6)
D—H···AD—HH···AD···AD—H···A
N4—H28···N20.88 (3)2.19 (3)2.629 (2)110 (2)
N3—H27···S1i0.98 (2)2.36 (3)3.318 (2)169 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H28⋯N20.88 (3)2.19 (3)2.629 (2)110 (2)
N3—H27⋯S1i 0.98 (2)2.36 (3)3.318 (2)169 (2)

Symmetry code: (i) .

  6 in total

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Journal:  Acta Crystallogr B       Date:  2002-05-29

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3.  Structural characteristics of thiosemicarbazones as inhibitors of melanogenesis.

Authors:  Ki-Cheul Lee; Pillaiyar Thanigaimalai; Vinay K Sharma; Min-Seok Kim; Eunmiri Roh; Bang-Yeon Hwang; Youngsoo Kim; Sang-Hun Jung
Journal:  Bioorg Med Chem Lett       Date:  2010-09-20       Impact factor: 2.823

4.  Phase I study of the ribonucleotide reductase inhibitor 3-aminopyridine-2-carboxaldehyde-thiosemicarbazone (3-AP) in combination with high dose cytarabine in patients with advanced myeloid leukemia.

Authors:  Olatoyosi M Odenike; Richard A Larson; Devika Gajria; M Eileen Dolan; Shannon M Delaney; Theodore G Karrison; Mark J Ratain; Wendy Stock
Journal:  Invest New Drugs       Date:  2008-01-24       Impact factor: 3.850

5.  Rationalization of physicochemical characters of oxazolyl thiosemicarbazone analogs towards multi-drug resistant tuberculosis: a QSAR approach.

Authors:  Revathi A Gupta; Arun K Gupta; Love K Soni; S G Kaskhedikar
Journal:  Eur J Med Chem       Date:  2007-01-27       Impact factor: 6.514

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  Design, Synthesis, DNA/HSA Binding, and Cytotoxic Activity of Half-Sandwich Ru(II)-Arene Complexes Containing Triarylamine-Thiosemicarbazone Hybrids.

Authors:  Mathiyan Muralisankar; Ramachandran Dheepika; Jebiti Haribabu; Chandrasekar Balachandran; Shin Aoki; Nattamai S P Bhuvanesh; Samuthira Nagarajan
Journal:  ACS Omega       Date:  2019-07-05
  1 in total

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