Literature DB >> 22904849

Methyl 2-(4a,8-Dimethyl-7-oxodeca-hydro-naphthalen-2-yl)acrylate.

Mohamed Tebbaa, Ahmed Benharref, Jean-Claude Daran, Latifa Barkaoui, Moha Berraho.   

Abstract

The title compound, C(16)H(24)O(3), was isolated from the aerial part of Inula Viscosa- (L) Aiton [or Dittrichia Viscosa- (L) Greuter]. The mol-ecule contains two fused (trans) six-membered rings which both exibit a chair conformation. In the crystal, mol-ecules are linked into chains along [100] by weak C-H⋯O hydrogen bonds involving the methyl and carbonyl groups.

Entities:  

Year:  2012        PMID: 22904849      PMCID: PMC3414316          DOI: 10.1107/S1600536812029303

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Barrero et al. (2009 ▶). For the medicinal inter­est in Inula Viscosa­ (L) Aiton [or Dittrichia Viscosa­ (L) Greuter], see: Shtacher & Kasshman (1970 ▶); Bohlmann et al. (1977 ▶); Chiappini et al. (1982 ▶). For the pharmacological inter­est, see: Azoulay et al. (1986 ▶); Bohlmann et al. (1977 ▶); Ceccherelli et al. (1988 ▶). For background to phytochemical studies of plants, see: Geissman & Toribio (1967 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H24O3 M = 264.35 Tetragonal, a = 7.3359 (1) Å c = 54.7419 (13) Å V = 2945.96 (9) Å3 Z = 8 Cu Kα radiation μ = 0.64 mm−1 T = 180 K 0.48 × 0.24 × 0.18 mm

Data collection

Agilent Xcalibur Eos Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.737, T max = 1.000 11562 measured reflections 2319 independent reflections 2286 reflections with I > 2σ(I) R int = 0.027 θmax = 62.0°

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.107 S = 1.22 2319 reflections 176 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶)and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812029303/fj2573sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812029303/fj2573Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812029303/fj2573Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H24O3Dx = 1.192 Mg m3
Mr = 264.35Cu Kα radiation, λ = 1.54184 Å
Tetragonal, P41212Cell parameters from 6272 reflections
Hall symbol: P 4abw 2nwθ = 3.2–61.9°
a = 7.3359 (1) ŵ = 0.64 mm1
c = 54.7419 (13) ÅT = 180 K
V = 2945.96 (9) Å3Box, colorless
Z = 80.48 × 0.24 × 0.18 mm
F(000) = 1152
Agilent Xcalibur Eos Gemini ultra diffractometer2319 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2286 reflections with I > 2σ(I)
Miror monochromatorRint = 0.027
Detector resolution: 16.1978 pixels mm-1θmax = 62.0°, θmin = 3.2°
ω scanh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −7→8
Tmin = 0.737, Tmax = 1.000l = −61→62
11562 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0378P)2 + 1.4663P] where P = (Fo2 + 2Fc2)/3
S = 1.22(Δ/σ)max < 0.001
2319 reflectionsΔρmax = 0.15 e Å3
176 parametersΔρmin = −0.13 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0079 (4)
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent Technologies, 2010)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0927 (3)0.8703 (3)0.07690 (4)0.0245 (5)
H1A1.20830.84720.08490.029*
H1B1.03110.96710.08570.029*
C21.1272 (3)0.9311 (3)0.05053 (4)0.0261 (5)
H21.19130.83130.04230.031*
C30.9461 (3)0.9583 (4)0.03717 (4)0.0342 (6)
H3A0.88081.05940.04450.041*
H3B0.96990.98870.02020.041*
C40.8288 (3)0.7880 (4)0.03835 (4)0.0368 (6)
H4A0.88970.69050.02960.044*
H4B0.71390.81180.03020.044*
C4A0.7903 (3)0.7247 (3)0.06465 (4)0.0293 (5)
C50.6931 (4)0.5403 (4)0.06370 (4)0.0413 (6)
H5A0.76210.45830.05330.050*
H5B0.57390.55670.05640.050*
C60.6696 (4)0.4520 (4)0.08907 (4)0.0406 (6)
H6A0.58580.52400.09880.049*
H6B0.61880.33070.08730.049*
C70.8502 (3)0.4407 (3)0.10176 (4)0.0300 (5)
C80.9541 (3)0.6181 (3)0.10379 (3)0.0265 (5)
H80.87890.70320.11320.032*
C8A0.9762 (3)0.6979 (3)0.07764 (4)0.0234 (5)
H8A1.04230.60590.06820.028*
C91.2453 (3)1.0976 (3)0.04836 (4)0.0247 (5)
C101.3641 (3)1.1046 (3)0.02623 (4)0.0286 (5)
C110.6688 (3)0.8646 (4)0.07742 (4)0.0395 (6)
H11A0.56020.88340.06800.059*
H11B0.73340.97780.07900.059*
H11C0.63640.82050.09330.059*
C121.1327 (3)0.5938 (3)0.11736 (4)0.0354 (6)
H12A1.11110.52910.13230.053*
H12B1.18390.71120.12100.053*
H12C1.21610.52570.10740.053*
C131.2460 (3)1.2350 (3)0.06410 (4)0.0344 (6)
H13A1.32051.33550.06130.041*
H13B1.17211.23080.07790.041*
C141.5954 (4)1.2590 (4)0.00496 (4)0.0429 (7)
H14A1.67421.15450.00510.064*
H14B1.66731.36800.00620.064*
H14C1.52711.2611−0.01000.064*
O10.9105 (2)0.2973 (2)0.10919 (3)0.0385 (4)
O21.3651 (3)0.9897 (3)0.01066 (3)0.0601 (6)
O31.4716 (2)1.2492 (2)0.02541 (3)0.0393 (5)
U11U22U33U12U13U23
C10.0237 (12)0.0234 (12)0.0265 (10)−0.0016 (9)−0.0015 (9)−0.0006 (9)
C20.0271 (13)0.0245 (12)0.0267 (10)−0.0025 (9)0.0026 (9)−0.0036 (9)
C30.0344 (14)0.0428 (15)0.0254 (10)−0.0081 (11)−0.0019 (10)0.0071 (10)
C40.0315 (14)0.0503 (16)0.0287 (11)−0.0116 (12)−0.0069 (10)0.0017 (11)
C4A0.0221 (12)0.0352 (13)0.0307 (11)−0.0037 (10)−0.0012 (9)0.0018 (10)
C50.0332 (15)0.0448 (16)0.0459 (14)−0.0175 (12)−0.0064 (11)0.0034 (12)
C60.0326 (15)0.0385 (15)0.0507 (14)−0.0120 (12)−0.0002 (11)0.0078 (12)
C70.0321 (13)0.0284 (13)0.0297 (10)−0.0008 (11)0.0103 (9)0.0010 (10)
C80.0272 (12)0.0267 (12)0.0256 (10)0.0021 (10)0.0031 (9)0.0001 (9)
C8A0.0225 (11)0.0218 (12)0.0257 (10)0.0006 (9)0.0022 (8)−0.0025 (8)
C90.0242 (12)0.0223 (12)0.0275 (10)0.0004 (10)0.0007 (8)0.0010 (9)
C100.0312 (13)0.0230 (12)0.0316 (11)−0.0036 (10)0.0012 (9)−0.0016 (9)
C110.0239 (13)0.0462 (16)0.0483 (14)0.0076 (12)0.0026 (11)0.0121 (12)
C120.0369 (14)0.0326 (14)0.0367 (12)−0.0039 (11)−0.0062 (10)0.0078 (10)
C130.0333 (13)0.0310 (13)0.0389 (12)−0.0066 (11)0.0098 (10)−0.0038 (11)
C140.0352 (14)0.0504 (17)0.0430 (14)−0.0076 (13)0.0161 (11)0.0028 (12)
O10.0422 (11)0.0254 (10)0.0479 (9)−0.0015 (8)0.0084 (8)0.0057 (7)
O20.0819 (16)0.0494 (12)0.0490 (10)−0.0310 (11)0.0323 (10)−0.0215 (10)
O30.0392 (10)0.0375 (10)0.0411 (9)−0.0152 (8)0.0162 (7)−0.0061 (7)
C1—C8A1.527 (3)C7—O11.211 (3)
C1—C21.532 (3)C7—C81.512 (3)
C1—H1A0.9700C8—C121.517 (3)
C1—H1B0.9700C8—C8A1.555 (3)
C2—C91.502 (3)C8—H80.9800
C2—C31.529 (3)C8A—H8A0.9800
C2—H20.9800C9—C131.326 (3)
C3—C41.519 (3)C9—C101.493 (3)
C3—H3A0.9700C10—O21.199 (3)
C3—H3B0.9700C10—O31.322 (3)
C4—C4A1.539 (3)C11—H11A0.9600
C4—H4A0.9700C11—H11B0.9600
C4—H4B0.9700C11—H11C0.9600
C4A—C111.529 (3)C12—H12A0.9600
C4A—C51.530 (3)C12—H12B0.9600
C4A—C8A1.551 (3)C12—H12C0.9600
C5—C61.542 (3)C13—H13A0.9300
C5—H5A0.9700C13—H13B0.9300
C5—H5B0.9700C14—O31.443 (3)
C6—C71.498 (3)C14—H14A0.9600
C6—H6A0.9700C14—H14B0.9600
C6—H6B0.9700C14—H14C0.9600
C8A—C1—C2111.03 (17)O1—C7—C8122.6 (2)
C8A—C1—H1A109.4C6—C7—C8115.6 (2)
C2—C1—H1A109.4C7—C8—C12111.72 (19)
C8A—C1—H1B109.4C7—C8—C8A107.99 (17)
C2—C1—H1B109.4C12—C8—C8A113.89 (18)
H1A—C1—H1B108.0C7—C8—H8107.7
C9—C2—C3110.93 (19)C12—C8—H8107.7
C9—C2—C1114.00 (17)C8A—C8—H8107.7
C3—C2—C1110.20 (18)C1—C8A—C4A112.01 (17)
C9—C2—H2107.1C1—C8A—C8113.25 (17)
C3—C2—H2107.1C4A—C8A—C8112.22 (17)
C1—C2—H2107.1C1—C8A—H8A106.2
C4—C3—C2111.4 (2)C4A—C8A—H8A106.2
C4—C3—H3A109.4C8—C8A—H8A106.2
C2—C3—H3A109.4C13—C9—C10119.9 (2)
C4—C3—H3B109.4C13—C9—C2124.7 (2)
C2—C3—H3B109.4C10—C9—C2115.42 (18)
H3A—C3—H3B108.0O2—C10—O3122.4 (2)
C3—C4—C4A113.09 (18)O2—C10—C9123.8 (2)
C3—C4—H4A109.0O3—C10—C9113.80 (18)
C4A—C4—H4A109.0C4A—C11—H11A109.5
C3—C4—H4B109.0C4A—C11—H11B109.5
C4A—C4—H4B109.0H11A—C11—H11B109.5
H4A—C4—H4B107.8C4A—C11—H11C109.5
C11—C4A—C5109.7 (2)H11A—C11—H11C109.5
C11—C4A—C4109.4 (2)H11B—C11—H11C109.5
C5—C4A—C4108.70 (19)C8—C12—H12A109.5
C11—C4A—C8A112.85 (18)C8—C12—H12B109.5
C5—C4A—C8A108.26 (19)H12A—C12—H12B109.5
C4—C4A—C8A107.80 (18)C8—C12—H12C109.5
C4A—C5—C6113.1 (2)H12A—C12—H12C109.5
C4A—C5—H5A109.0H12B—C12—H12C109.5
C6—C5—H5A109.0C9—C13—H13A120.0
C4A—C5—H5B109.0C9—C13—H13B120.0
C6—C5—H5B109.0H13A—C13—H13B120.0
H5A—C5—H5B107.8O3—C14—H14A109.5
C7—C6—C5110.0 (2)O3—C14—H14B109.5
C7—C6—H6A109.7H14A—C14—H14B109.5
C5—C6—H6A109.7O3—C14—H14C109.5
C7—C6—H6B109.7H14A—C14—H14C109.5
C5—C6—H6B109.7H14B—C14—H14C109.5
H6A—C6—H6B108.2C10—O3—C14116.22 (19)
O1—C7—C6121.8 (2)
D—H···AD—HH···AD···AD—H···A
C14—H14B···O2i0.962.543.113 (3)118
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C14—H14B⋯O2i 0.962.543.113 (3)118

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure of Cyperanic Acid, a New Sesquiterpene from Dittrichia viscosa.

Authors:  P Ceccherelli; M Curini; M C Marcotullio; A Menghini
Journal:  J Nat Prod       Date:  1988-09       Impact factor: 4.050

3.  [Helenine and santonine, the 12-carboxy-eudesma-3,11(13) diene].

Authors:  P Azoulay; J P Reynier; G Balansard; M Gasquet; P Timon-David
Journal:  Pharm Acta Helv       Date:  1986

4.  Flavonoids from Dittrichia viscosa.

Authors:  I Chiappini; G Fardella; A Menghini; C Rossi
Journal:  Planta Med       Date:  1982-03       Impact factor: 3.352

5.  12-carboxyeudesma-3,11(13)-diene. A novel sesquiterpenic acid with a narrow antifungal spectrum.

Authors:  G Shtacher; Y Kashman
Journal:  J Med Chem       Date:  1970-11       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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