Literature DB >> 22904846

2,2'-(Piperazine-1,4-di-yl)diethanaminium bis-(2-hy-droxy-benzoate).

Ignacy Cukrowski1, Adedapo S Adeyinka, David C Liles.   

Abstract

The asymmetric unit of the title salt, C(8)H(22)N(4) (2+)·2C(7)H(5)O(3) (-), comprises half a 2,2'-(piperazine-1,4-di-yl)diethan-aminium dication plus a 2-hy-droxy-benzoate anion. In the crystal, the anions and cations are linked by N-H⋯O and O-H⋯O hydrogen bonds to form infinite two-dimensional networks parallel with the a unit-cell face. The conformation adopted by the cation in the crystal is very similar to that adopted by the same cation in the structures of the nitrate and tetra-hydrogen penta-borate salts.

Entities:  

Year:  2012        PMID: 22904846      PMCID: PMC3414313          DOI: 10.1107/S1600536812030103

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of the nitrate and tetra­hydrogen penta­borate salts of the 1,4-di(2-ammonio­eth­yl)piperazine cation, see: Junk & Smith (2005 ▶); Jiang et al. (2009 ▶); Yang et al. (2011 ▶).

Experimental

Crystal data

C8H22N4 2+·2C7H5O3 M = 448.52 Monoclinic, a = 11.5374 (4) Å b = 6.4759 (2) Å c = 15.5264 (6) Å β = 104.207 (2)° V = 1124.58 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 180 K 0.37 × 0.10 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.852, T max = 0.995 19655 measured reflections 3261 independent reflections 2013 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.147 S = 1.08 3261 reflections 157 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.28 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶), SCALEPACK and SORTAV (Blessing, 1995 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶), POV-RAY (Cason, 2004 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812030103/jj2133sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812030103/jj2133Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812030103/jj2133Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H22N42+·2C7H5O3F(000) = 480
Mr = 448.52Dx = 1.325 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 26933 reflections
a = 11.5374 (4) Åθ = 1.0–30.0°
b = 6.4759 (2) ŵ = 0.10 mm1
c = 15.5264 (6) ÅT = 180 K
β = 104.207 (2)°Block, yellow
V = 1124.58 (7) Å30.37 × 0.10 × 0.05 mm
Z = 2
Nonius KappaCCD diffractometer3261 independent reflections
Radiation source: fine-focus sealed tube2013 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.065
Thin slice ω and φ scansθmax = 30.0°, θmin = 3.6°
Absorption correction: multi-scan (SORTAV; Blessing, 1995)h = −16→16
Tmin = 0.852, Tmax = 0.995k = −8→9
19655 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: difference Fourier map
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0714P)2 + 0.0149P] where P = (Fo2 + 2Fc2)/3
3261 reflections(Δ/σ)max < 0.001
157 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The –OH and –NH3 hydrogen atoms were located and their positions were refined satisfactorily.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.39360 (12)0.1995 (2)0.71495 (9)0.0296 (3)
H1A0.4724 (16)0.215 (2)0.7117 (11)0.036*
H1B0.3890 (14)0.076 (3)0.7403 (10)0.036*
H1C0.3822 (14)0.299 (3)0.7516 (11)0.036*
C20.30579 (14)0.2076 (2)0.62703 (10)0.0355 (4)
H2A0.22420.18660.63520.043*
H2B0.32280.09450.58900.043*
C30.31138 (13)0.4123 (2)0.58149 (11)0.0328 (4)
H3A0.24670.41860.52620.039*
H3B0.29850.52570.62090.039*
N40.42749 (11)0.44057 (19)0.55982 (8)0.0321 (3)
C50.43393 (14)0.3166 (2)0.48157 (11)0.0350 (4)
H5A0.36910.35930.43020.042*
H5B0.42190.16910.49370.042*
C60.44661 (14)0.6567 (2)0.54111 (10)0.0332 (4)
H6A0.44460.74190.59370.040*
H6B0.38170.70440.49070.040*
C70.80219 (12)0.2749 (2)0.66915 (9)0.0261 (3)
C80.84808 (13)0.4670 (2)0.70044 (10)0.0307 (3)
H80.81290.53940.74080.037*
C90.94297 (13)0.5555 (2)0.67466 (11)0.0356 (4)
H90.97310.68630.69730.043*
C100.99343 (14)0.4510 (3)0.61536 (11)0.0390 (4)
H101.05840.51110.59680.047*
C110.95065 (15)0.2608 (3)0.58287 (11)0.0381 (4)
H110.98610.19080.54200.046*
C120.85550 (13)0.1702 (2)0.60957 (10)0.0306 (3)
C130.69936 (13)0.1830 (2)0.69894 (9)0.0273 (3)
O140.64524 (9)0.28943 (15)0.74448 (7)0.0321 (3)
O150.67079 (11)−0.00229 (16)0.67621 (7)0.0393 (3)
O160.81677 (11)−0.01682 (18)0.57563 (8)0.0418 (3)
H160.7652 (17)−0.055 (3)0.5996 (14)0.050*
U11U22U33U12U13U23
N10.0299 (7)0.0264 (7)0.0360 (7)−0.0006 (6)0.0145 (6)0.0013 (6)
C20.0369 (8)0.0391 (9)0.0326 (8)−0.0098 (7)0.0124 (7)−0.0004 (7)
C30.0312 (8)0.0365 (9)0.0327 (8)0.0006 (7)0.0115 (6)0.0030 (7)
N40.0301 (7)0.0310 (7)0.0359 (7)−0.0020 (5)0.0091 (5)0.0064 (6)
C50.0381 (8)0.0336 (8)0.0345 (9)−0.0029 (7)0.0111 (7)0.0020 (7)
C60.0362 (8)0.0299 (8)0.0339 (8)0.0013 (7)0.0094 (7)0.0017 (7)
C70.0249 (7)0.0260 (7)0.0270 (7)0.0011 (6)0.0057 (6)0.0028 (6)
C80.0265 (7)0.0302 (8)0.0359 (8)0.0007 (6)0.0084 (6)−0.0030 (7)
C90.0298 (8)0.0322 (8)0.0435 (9)−0.0052 (7)0.0068 (7)0.0011 (7)
C100.0289 (8)0.0464 (10)0.0434 (9)−0.0028 (7)0.0123 (7)0.0066 (8)
C110.0355 (8)0.0446 (10)0.0387 (9)0.0066 (7)0.0180 (7)0.0010 (7)
C120.0332 (8)0.0278 (7)0.0309 (8)0.0021 (6)0.0076 (6)0.0013 (6)
C130.0294 (7)0.0254 (7)0.0266 (7)−0.0011 (6)0.0061 (6)0.0025 (6)
O140.0321 (6)0.0299 (6)0.0379 (6)0.0002 (4)0.0154 (5)−0.0010 (5)
O150.0528 (7)0.0291 (6)0.0409 (6)−0.0125 (5)0.0210 (5)−0.0062 (5)
O160.0532 (8)0.0314 (6)0.0466 (7)−0.0046 (5)0.0234 (6)−0.0111 (5)
N1—C21.488 (2)C6—H6B0.9900
N1—H1A0.929 (17)C7—C81.392 (2)
N1—H1B0.900 (18)C7—C121.404 (2)
N1—H1C0.892 (18)C7—C131.498 (2)
C2—C31.511 (2)C8—C91.379 (2)
C2—H2A0.9900C8—H80.9500
C2—H2B0.9900C9—C101.381 (2)
C3—N41.4706 (19)C9—H90.9500
C3—H3A0.9900C10—C111.376 (2)
C3—H3B0.9900C10—H100.9500
N4—C61.4572 (19)C11—C121.394 (2)
N4—C51.473 (2)C11—H110.9500
C5—C6i1.514 (2)C12—O161.3524 (18)
C5—H5A0.9900C13—O141.2575 (17)
C5—H5B0.9900C13—O151.2714 (17)
C6—C5i1.514 (2)O16—H160.81 (2)
C6—H6A0.9900
C2—N1—H1A113.7 (10)N4—C6—H6A109.6
C2—N1—H1B109.4 (10)C5i—C6—H6A109.6
H1A—N1—H1B106.6 (14)N4—C6—H6B109.6
C2—N1—H1C112.7 (10)C5i—C6—H6B109.6
H1A—N1—H1C104.7 (15)H6A—C6—H6B108.1
H1B—N1—H1C109.4 (15)C8—C7—C12118.06 (14)
N1—C2—C3111.24 (13)C8—C7—C13120.61 (13)
N1—C2—H2A109.4C12—C7—C13121.33 (13)
C3—C2—H2A109.4C9—C8—C7122.09 (14)
N1—C2—H2B109.4C9—C8—H8119.0
C3—C2—H2B109.4C7—C8—H8119.0
H2A—C2—H2B108.0C8—C9—C10118.95 (15)
N4—C3—C2111.24 (12)C8—C9—H9120.5
N4—C3—H3A109.4C10—C9—H9120.5
C2—C3—H3A109.4C11—C10—C9120.74 (15)
N4—C3—H3B109.4C11—C10—H10119.6
C2—C3—H3B109.4C9—C10—H10119.6
H3A—C3—H3B108.0C10—C11—C12120.36 (15)
C6—N4—C3110.87 (12)C10—C11—H11119.8
C6—N4—C5108.55 (12)C12—C11—H11119.8
C3—N4—C5110.73 (11)O16—C12—C11118.04 (14)
N4—C5—C6i111.26 (12)O16—C12—C7122.17 (13)
N4—C5—H5A109.4C11—C12—C7119.79 (14)
C6i—C5—H5A109.4O14—C13—O15122.86 (13)
N4—C5—H5B109.4O14—C13—C7119.76 (13)
C6i—C5—H5B109.4O15—C13—C7117.39 (13)
H5A—C5—H5B108.0C12—O16—H16107.4 (14)
N4—C6—C5i110.31 (13)
N1—C2—C3—N464.77 (17)C9—C10—C11—C12−0.1 (2)
C2—C3—N4—C6−162.96 (13)C10—C11—C12—O16179.96 (14)
C2—C3—N4—C576.48 (16)C10—C11—C12—C70.7 (2)
C6—N4—C5—C6i58.44 (17)C8—C7—C12—O16−179.88 (13)
C3—N4—C5—C6i−179.64 (12)C13—C7—C12—O160.5 (2)
C3—N4—C6—C5i−179.69 (12)C8—C7—C12—C11−0.7 (2)
C5—N4—C6—C5i−57.85 (17)C13—C7—C12—C11179.64 (13)
C12—C7—C8—C90.1 (2)C8—C7—C13—O148.1 (2)
C13—C7—C8—C9179.72 (13)C12—C7—C13—O14−172.27 (13)
C7—C8—C9—C100.5 (2)C8—C7—C13—O15−172.00 (13)
C8—C9—C10—C11−0.5 (2)C12—C7—C13—O157.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O140.929 (17)1.992 (18)2.8853 (17)160.9 (14)
N1—H1B···O14ii0.900 (18)1.923 (19)2.7909 (17)161.5 (14)
N1—H1C···O15iii0.892 (18)1.902 (19)2.7843 (17)169.9 (15)
O16—H16···O150.81 (2)1.83 (2)2.5641 (16)149.4 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O140.929 (17)1.992 (18)2.8853 (17)160.9 (14)
N1—H1B⋯O14i 0.900 (18)1.923 (19)2.7909 (17)161.5 (14)
N1—H1C⋯O15ii 0.892 (18)1.902 (19)2.7843 (17)169.9 (15)
O16—H16⋯O150.81 (2)1.83 (2)2.5641 (16)149.4 (19)

Symmetry codes: (i) ; (ii) .

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